| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078098
Identifier: 170078098
GI number: 170078098
Start: 1568588
End: 1571512
Strand: Direct
Name: 170078098
Synonym: SYNPCC7002_A1489
Alternate gene names: NA
Gene position: 1568588-1571512 (Clockwise)
Preceding gene: 170078097
Following gene: 170078103
Centisome position: 52.15
GC content: 38.77
Gene sequence:
>2925_bases GTGGTCTGCTCTAGATCAAAAATGACAATTAAACAGTCAGTTGTGCCACTTTTAGTCACTTTTTACTTGGGATATTTAGG AACAAATCAAACCTTAAGTATCGCCGCAAATTTCCCCTTAGAGACAGACAGGCTATCTTATGAGAATGGACAGAGTGACC AAGACAACCTTCAAAAAAAACTATCTAGTTATGAAGCAATAAAAGTTATTGCACAATCCCCTTTAAACTCGGAATTATTT AATGATAGTCAAATCAGTCCAGAACAAATAGATCTCGAAGAGGGGATTCTACCAGAGTTTCCGATTCGCCAAGACTTAGA AGATCAAAATACAGAAGAATTAGAACAAGATTTTAAAGAAGCAGCAAGTGAATCTGAAAATCTTGATAGGAGAAAAGAAT TAATCAGACGGTTTATGTTACGTTCTCTCGCGATTAGCTCACAGAGATATCCATTTCTCATCGATCCAACTGATAATATA ACTTTTGAACCTCTGCAATTTAATCCTTTTGAGCTAGAAAGTTATGGTCAATTTGATCTTCAAATTGACAACAGTGATTT TGTAATTGATAAAATCACTTATGGTCTCTTTCCTAAGGAAAATCAGTTCTATTGGGTTCTCCCCAATAATAGAATTGTAT TTGAAACCCAAGGTTGGGTTGGTGGTCTTCAGTATCAGGGACAAACCACAGATATCCGAGAAATACGTGACGCTCGTCAG GAAGTTTCATTTTGGGGATTACAGGCTGTTTGGAATATTCCGAGAATACGAGCTGATGGATCTAGCACGACGGATATTCT ATCTATTGAAGAACTACGTCAGGCAGATATCATAACATTTGCTGGACAAGTCACTTCCAATGATGGTTTTCCCGGTCAAG TGATTATTAATAGCGGTATTGATCTTAATGATCCAAGCATTACTGATATTAGTGAGCTTTTAAATTCTCCACCAGGCTTA GGAGAAACATCAACCAATTCTACCCAGGGAGGTAAAAATCTTTTCGAAGGATTAGAAGATGACCGGACACCAGTTATTTT GCAGGCATTTCCCACTAGCGACTTAAGTAAGTTATTGGATAACAATGTTGATCTCCGTGAGGGAGAGTTTATTCCTAGGG AAAATTTAACGAATACGGGAATTGTTTTTGGAGATCTGACCAAAGGCGACAGAATTGAAATTGATCTTGATTTTACTTCA GTGCCAGGTGTTAAGTTTGCTCGTCCCTTTGATGACTTCAAAAACCTTGATCTTTTAAATGTTTTAGTCAACCCAGAGCT AACCGGAAAAGAATATGAACGACGTTATCTAAATTCACTACTCTGGAACGGGATTCGTCGTAGTCCCAGAATTGATAATG CTAGAGTCACTACAGAAACAACCAGTTGGTATCAAGGATATCTAAGCCGTCCTCACAAGCGCGCAGCCATTACGTACCAT GCTGAGGAGCCTTCTGCTACTTTTACAGAAATTTTTGCTAACCCTGGCCTTGGTTTCACAGTAGGCAGTTGGGGAGATAA ATTTGATGGGATTCAGTTTCTTAATATTACAACTGGTTTGCTTTTAGGCGGAATTTTTGAAGCAGTTGATGAGGATGGTG TTCAAGATTCATTAAATACAGCAAAAGAACTCTTCGAACAGGGTAAGCTCACTTCTGGTTTAAATACGAAAGCAACATCT CAAGAATTAAGAGAGCTTGGTTTACGTCTGGATAAAAGTCTTTTATATGCTGATTTTAATACTAATATCGCACAAACATC GGGAAGATTAACTTCTGATAGTTATATCACACCTAAAACATCAGAGTTATGGCAGCTTCGTACCGGATTGTTCCCGCGTC GTGTTCAAATAATCGAAGAACAACAACTAAGCTCAACTGCAGGACAACCTTTCTTTTCCACAGTTGATATTTCACAATTT GGGCAACTGACTTTTGTCAGTATTCCTTCTTCAGAAGATCGTCTATTTGAAACACCCGAAGAAACAGAAAATGTCGTTTT TTCACCTAACTTTTCTCCGGGATCGCCACGTACAACATTTGGCACAGAAGTTCTTTTGACAACACCTAGTGGACAACGTT TTGTACAGCGCTTTTCAACGGATTCCACTCAATTTAGTAGTTTGCCTAATTCGATTAAAAGCTCTGACATTGCGTTTGAT CGGATTAATATTGCCCAAATTGATCAAGTTCAATCTCTTACTTCAATTTATGAAGGTATCGCTTATGTTCCAGCTATTGA GTTAGCGTACGCAGGTTCTTCTGATCTTTGGTATTACAATCTTAATGCAGGCATCTGGGCTACGTTTAATAGTCAAGTGG CTCCTGGTGTCACAGAAAAAGTTATTGATAATAACGAGCCAGCAATTGGTGCTTATTTAAAGGGTTTTGCAAACGCGATT CAAGAAATTCCTATTTTGAATGAAAATTCAATGGCCATGGGAGTTAGAACCTATGGCCCGACATTTCGTTTCAATACAGA TACCCAAAGCCGGTTTAATTTGACCTTGGGTTACGAATATGGTGAACGCCGTCCTGGAATGGGTTGGACTCTGCGACCAA CCTTATTTTATTCTCAAGGTACTAGTACTAATGAAGATGAAAACCTACGTAACTGGGTCGGACTGCTTGATGGACAAATT GGCCTACAGTCAGGTTTGAGTATTATTAACCGCTTAGAGTTTGGGGAACAGTTATTCACAAGTTTAACGGCACGCCAGCG GCTTAATCCCAATATTTCAGTTGGTATTTATACACAAAACTTTGATAATGAGATTTCTGGTTTAGGTCAGCGGACAGAAG GCAGTTCAATAGGATTAATCTTGCGCTATGACTCGATAAAAAGCCGCACATCTTTTTATGAAGGGCGAATTGGGACGAGT GATACTGGCTTTGATTTTGAATTTCGTAGCCGCTTTAGTTTTTAA
Upstream 100 bases:
>100_bases TTTGCAACAATTGGTAATATATGTGGTCTAAACGATAAAGAAGTGGTAAAAAGCGTAAGGAAATCCATAATTATGTATCC ACAGCTCTTTATGGTTGCTG
Downstream 100 bases:
>100_bases CCAAAGAAGAAAAGAGGAGAGATGATTTAGTCGTTATCTCTCCTTTGCAAATCAGGAATTAAGAATGAATAAAATTCTTT GAAAAGCTCGAATGACAGTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 974; Mature: 974
Protein sequence:
>974_residues MVCSRSKMTIKQSVVPLLVTFYLGYLGTNQTLSIAANFPLETDRLSYENGQSDQDNLQKKLSSYEAIKVIAQSPLNSELF NDSQISPEQIDLEEGILPEFPIRQDLEDQNTEELEQDFKEAASESENLDRRKELIRRFMLRSLAISSQRYPFLIDPTDNI TFEPLQFNPFELESYGQFDLQIDNSDFVIDKITYGLFPKENQFYWVLPNNRIVFETQGWVGGLQYQGQTTDIREIRDARQ EVSFWGLQAVWNIPRIRADGSSTTDILSIEELRQADIITFAGQVTSNDGFPGQVIINSGIDLNDPSITDISELLNSPPGL GETSTNSTQGGKNLFEGLEDDRTPVILQAFPTSDLSKLLDNNVDLREGEFIPRENLTNTGIVFGDLTKGDRIEIDLDFTS VPGVKFARPFDDFKNLDLLNVLVNPELTGKEYERRYLNSLLWNGIRRSPRIDNARVTTETTSWYQGYLSRPHKRAAITYH AEEPSATFTEIFANPGLGFTVGSWGDKFDGIQFLNITTGLLLGGIFEAVDEDGVQDSLNTAKELFEQGKLTSGLNTKATS QELRELGLRLDKSLLYADFNTNIAQTSGRLTSDSYITPKTSELWQLRTGLFPRRVQIIEEQQLSSTAGQPFFSTVDISQF GQLTFVSIPSSEDRLFETPEETENVVFSPNFSPGSPRTTFGTEVLLTTPSGQRFVQRFSTDSTQFSSLPNSIKSSDIAFD RINIAQIDQVQSLTSIYEGIAYVPAIELAYAGSSDLWYYNLNAGIWATFNSQVAPGVTEKVIDNNEPAIGAYLKGFANAI QEIPILNENSMAMGVRTYGPTFRFNTDTQSRFNLTLGYEYGERRPGMGWTLRPTLFYSQGTSTNEDENLRNWVGLLDGQI GLQSGLSIINRLEFGEQLFTSLTARQRLNPNISVGIYTQNFDNEISGLGQRTEGSSIGLILRYDSIKSRTSFYEGRIGTS DTGFDFEFRSRFSF
Sequences:
>Translated_974_residues MVCSRSKMTIKQSVVPLLVTFYLGYLGTNQTLSIAANFPLETDRLSYENGQSDQDNLQKKLSSYEAIKVIAQSPLNSELF NDSQISPEQIDLEEGILPEFPIRQDLEDQNTEELEQDFKEAASESENLDRRKELIRRFMLRSLAISSQRYPFLIDPTDNI TFEPLQFNPFELESYGQFDLQIDNSDFVIDKITYGLFPKENQFYWVLPNNRIVFETQGWVGGLQYQGQTTDIREIRDARQ EVSFWGLQAVWNIPRIRADGSSTTDILSIEELRQADIITFAGQVTSNDGFPGQVIINSGIDLNDPSITDISELLNSPPGL GETSTNSTQGGKNLFEGLEDDRTPVILQAFPTSDLSKLLDNNVDLREGEFIPRENLTNTGIVFGDLTKGDRIEIDLDFTS VPGVKFARPFDDFKNLDLLNVLVNPELTGKEYERRYLNSLLWNGIRRSPRIDNARVTTETTSWYQGYLSRPHKRAAITYH AEEPSATFTEIFANPGLGFTVGSWGDKFDGIQFLNITTGLLLGGIFEAVDEDGVQDSLNTAKELFEQGKLTSGLNTKATS QELRELGLRLDKSLLYADFNTNIAQTSGRLTSDSYITPKTSELWQLRTGLFPRRVQIIEEQQLSSTAGQPFFSTVDISQF GQLTFVSIPSSEDRLFETPEETENVVFSPNFSPGSPRTTFGTEVLLTTPSGQRFVQRFSTDSTQFSSLPNSIKSSDIAFD RINIAQIDQVQSLTSIYEGIAYVPAIELAYAGSSDLWYYNLNAGIWATFNSQVAPGVTEKVIDNNEPAIGAYLKGFANAI QEIPILNENSMAMGVRTYGPTFRFNTDTQSRFNLTLGYEYGERRPGMGWTLRPTLFYSQGTSTNEDENLRNWVGLLDGQI GLQSGLSIINRLEFGEQLFTSLTARQRLNPNISVGIYTQNFDNEISGLGQRTEGSSIGLILRYDSIKSRTSFYEGRIGTS DTGFDFEFRSRFSF >Mature_974_residues MVCSRSKMTIKQSVVPLLVTFYLGYLGTNQTLSIAANFPLETDRLSYENGQSDQDNLQKKLSSYEAIKVIAQSPLNSELF NDSQISPEQIDLEEGILPEFPIRQDLEDQNTEELEQDFKEAASESENLDRRKELIRRFMLRSLAISSQRYPFLIDPTDNI TFEPLQFNPFELESYGQFDLQIDNSDFVIDKITYGLFPKENQFYWVLPNNRIVFETQGWVGGLQYQGQTTDIREIRDARQ EVSFWGLQAVWNIPRIRADGSSTTDILSIEELRQADIITFAGQVTSNDGFPGQVIINSGIDLNDPSITDISELLNSPPGL GETSTNSTQGGKNLFEGLEDDRTPVILQAFPTSDLSKLLDNNVDLREGEFIPRENLTNTGIVFGDLTKGDRIEIDLDFTS VPGVKFARPFDDFKNLDLLNVLVNPELTGKEYERRYLNSLLWNGIRRSPRIDNARVTTETTSWYQGYLSRPHKRAAITYH AEEPSATFTEIFANPGLGFTVGSWGDKFDGIQFLNITTGLLLGGIFEAVDEDGVQDSLNTAKELFEQGKLTSGLNTKATS QELRELGLRLDKSLLYADFNTNIAQTSGRLTSDSYITPKTSELWQLRTGLFPRRVQIIEEQQLSSTAGQPFFSTVDISQF GQLTFVSIPSSEDRLFETPEETENVVFSPNFSPGSPRTTFGTEVLLTTPSGQRFVQRFSTDSTQFSSLPNSIKSSDIAFD RINIAQIDQVQSLTSIYEGIAYVPAIELAYAGSSDLWYYNLNAGIWATFNSQVAPGVTEKVIDNNEPAIGAYLKGFANAI QEIPILNENSMAMGVRTYGPTFRFNTDTQSRFNLTLGYEYGERRPGMGWTLRPTLFYSQGTSTNEDENLRNWVGLLDGQI GLQSGLSIINRLEFGEQLFTSLTARQRLNPNISVGIYTQNFDNEISGLGQRTEGSSIGLILRYDSIKSRTSFYEGRIGTS DTGFDFEFRSRFSF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 109406; Mature: 109406
Theoretical pI: Translated: 4.27; Mature: 4.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVCSRSKMTIKQSVVPLLVTFYLGYLGTNQTLSIAANFPLETDRLSYENGQSDQDNLQKK CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHH LSSYEAIKVIAQSPLNSELFNDSQISPEQIDLEEGILPEFPIRQDLEDQNTEELEQDFKE HHHHHHHHHHHCCCCCHHHCCCCCCCHHHCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHH AASESENLDRRKELIRRFMLRSLAISSQRYPFLIDPTDNITFEPLQFNPFELESYGQFDL HHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEECCCCCCCEECCCCCEEEE QIDNSDFVIDKITYGLFPKENQFYWVLPNNRIVFETQGWVGGLQYQGQTTDIREIRDARQ EECCCCEEEEEHEECCCCCCCCEEEEECCCEEEEEECCCCCCEEECCCCCHHHHHHHHHH EVSFWGLQAVWNIPRIRADGSSTTDILSIEELRQADIITFAGQVTSNDGFPGQVIINSGI HHHHHHHHHHHCCCEEECCCCCCCCEEEHHHHHHCCEEEEECEEECCCCCCCEEEEECCC DLNDPSITDISELLNSPPGLGETSTNSTQGGKNLFEGLEDDRTPVILQAFPTSDLSKLLD CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEECCCHHHHHHHC NNVDLREGEFIPRENLTNTGIVFGDLTKGDRIEIDLDFTSVPGVKFARPFDDFKNLDLLN CCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCHHHCCCEEEE VLVNPELTGKEYERRYLNSLLWNGIRRSPRIDNARVTTETTSWYQGYLSRPHKRAAITYH EEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHCCCCCCEEEEEE AEEPSATFTEIFANPGLGFTVGSWGDKFDGIQFLNITTGLLLGGIFEAVDEDGVQDSLNT CCCCCCHHHHHHCCCCCCEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCHHHHHH AKELFEQGKLTSGLNTKATSQELRELGLRLDKSLLYADFNTNIAQTSGRLTSDSYITPKT HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCHHHCCCCCCCCCCCCCCC SELWQLRTGLFPRRVQIIEEQQLSSTAGQPFFSTVDISQFGQLTFVSIPSSEDRLFETPE HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCEEEEECCCCCCCCCCCCC ETENVVFSPNFSPGSPRTTFGTEVLLTTPSGQRFVQRFSTDSTQFSSLPNSIKSSDIAFD CCCCEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCHHHHHCCCHHHCCCCEEE RINIAQIDQVQSLTSIYEGIAYVPAIELAYAGSSDLWYYNLNAGIWATFNSQVAPGVTEK ECCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCHHH VIDNNEPAIGAYLKGFANAIQEIPILNENSMAMGVRTYGPTFRFNTDTQSRFNLTLGYEY HHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEECCCCCCEEEEEEEECC GERRPGMGWTLRPTLFYSQGTSTNEDENLRNWVGLLDGQIGLQSGLSIINRLEFGEQLFT CCCCCCCCEEECCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH SLTARQRLNPNISVGIYTQNFDNEISGLGQRTEGSSIGLILRYDSIKSRTSFYEGRIGTS HHHHHHHCCCCEEEEEEECCCCCHHHCCCCCCCCCCEEEEEEECCCCCHHHHHCCCCCCC DTGFDFEFRSRFSF CCCCCCHHHCCCCC >Mature Secondary Structure MVCSRSKMTIKQSVVPLLVTFYLGYLGTNQTLSIAANFPLETDRLSYENGQSDQDNLQKK CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHH LSSYEAIKVIAQSPLNSELFNDSQISPEQIDLEEGILPEFPIRQDLEDQNTEELEQDFKE HHHHHHHHHHHCCCCCHHHCCCCCCCHHHCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHH AASESENLDRRKELIRRFMLRSLAISSQRYPFLIDPTDNITFEPLQFNPFELESYGQFDL HHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEECCCCCCCEECCCCCEEEE QIDNSDFVIDKITYGLFPKENQFYWVLPNNRIVFETQGWVGGLQYQGQTTDIREIRDARQ EECCCCEEEEEHEECCCCCCCCEEEEECCCEEEEEECCCCCCEEECCCCCHHHHHHHHHH EVSFWGLQAVWNIPRIRADGSSTTDILSIEELRQADIITFAGQVTSNDGFPGQVIINSGI HHHHHHHHHHHCCCEEECCCCCCCCEEEHHHHHHCCEEEEECEEECCCCCCCEEEEECCC DLNDPSITDISELLNSPPGLGETSTNSTQGGKNLFEGLEDDRTPVILQAFPTSDLSKLLD CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEECCCHHHHHHHC NNVDLREGEFIPRENLTNTGIVFGDLTKGDRIEIDLDFTSVPGVKFARPFDDFKNLDLLN CCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCHHHCCCEEEE VLVNPELTGKEYERRYLNSLLWNGIRRSPRIDNARVTTETTSWYQGYLSRPHKRAAITYH EEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHCCCCCCEEEEEE AEEPSATFTEIFANPGLGFTVGSWGDKFDGIQFLNITTGLLLGGIFEAVDEDGVQDSLNT CCCCCCHHHHHHCCCCCCEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCHHHHHH AKELFEQGKLTSGLNTKATSQELRELGLRLDKSLLYADFNTNIAQTSGRLTSDSYITPKT HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCHHHCCCCCCCCCCCCCCC SELWQLRTGLFPRRVQIIEEQQLSSTAGQPFFSTVDISQFGQLTFVSIPSSEDRLFETPE HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCEEEEECCCCCCCCCCCCC ETENVVFSPNFSPGSPRTTFGTEVLLTTPSGQRFVQRFSTDSTQFSSLPNSIKSSDIAFD CCCCEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCHHHHHCCCHHHCCCCEEE RINIAQIDQVQSLTSIYEGIAYVPAIELAYAGSSDLWYYNLNAGIWATFNSQVAPGVTEK ECCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCHHH VIDNNEPAIGAYLKGFANAIQEIPILNENSMAMGVRTYGPTFRFNTDTQSRFNLTLGYEY HHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEECCCCCCEEEEEEEECC GERRPGMGWTLRPTLFYSQGTSTNEDENLRNWVGLLDGQIGLQSGLSIINRLEFGEQLFT CCCCCCCCEEECCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH SLTARQRLNPNISVGIYTQNFDNEISGLGQRTEGSSIGLILRYDSIKSRTSFYEGRIGTS HHHHHHHCCCCEEEEEEECCCCCHHHCCCCCCCCCCEEEEEEECCCCCHHHHHCCCCCCC DTGFDFEFRSRFSF CCCCCCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA