Definition Synechococcus sp. PCC 7002 chromosome, complete genome.
Accession NC_010475
Length 3,008,047

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The map label for this gene is pyrD [H]

Identifier: 170078051

GI number: 170078051

Start: 1511550

End: 1512566

Strand: Reverse

Name: pyrD [H]

Synonym: SYNPCC7002_A1442

Alternate gene names: 170078051

Gene position: 1512566-1511550 (Counterclockwise)

Preceding gene: 170078052

Following gene: 170078049

Centisome position: 50.28

GC content: 45.23

Gene sequence:

>1017_bases
ATGGATTTAACCACACAATATTTAGGTCTGACCCTGCGATCGCCATTAATTGTTGGTGCAGCCGCTCCCTTAACTGAGGA
CATCGATAACATCAAACGGATGGAGGATGCCGGAGCCGGAGCCGTCGTTTTACATTCCCTCTTTGAAGAACAAATTCGTA
AAGAAAAACTCGAATTGCACCATCACTTCACCTATGGAACGGACTCCTTTGCCGAAGCCTTAAATTATTTCCCAGAGAAT
GCTTCCAATGTTTTTCATGTAGGTGTTGAAACCTATTTAGAACATATTCGGACTGCTAAATCCGCCGTCGATATGCCGAT
TATTGCCAGCCTCAACGGTTCTCACCAAGGGGAATGGGAACACACCGCCAAACTGATGGAACAAGCCGGAGCCGATGCCA
TTGAATTGAACATTTATTATGTCCCGACGGATATTAATAAAAACGGTTCAGAGGTGGAGTATGAATATATTCAAATCGTG
CGGACAGTGCGGGAAAATTTAAATATTCCCGTTGCCGTAAAGCTGAGTCCGTTCTTTAGCAACATGGCAAATATAGCGAA
ACGGTTAGTTGATAATGGGGCGAGTGGCTTAGTTTTATTTAACCGTTTTTATCAGCCGGATATTGATATCGAAAACCTGG
AAGTCACCCCGAATTTAATCCTGAGTAGCCCGTTGGATATGCGTCTGCCGATGCGCTGGATTGCGATGCTTTATGGGCGT
TTAGATGTGGACTTTGCGGCGACCAGCGGCATTCAACGGGGAACCGATGCGATCAAAATGTTAATGGCGGGGGCAAAAGT
GACGGCTTTAGTGGCGACTTTATTACGCCATGGTATTCATCACATTGAAACCATTGAAACAGAAATGATGCAATGGCTCG
AAGAACATGAATATCTATCCCTTGAACAATTGCGGGGCAGCATGAGCCAGATTAATTGTCCCGATGAAAGTGCCTTTGAA
CGGGCGCAATATATGCGGGCGATTCAATCCTACCAACCAGAGCGACATACACTTTGA

Upstream 100 bases:

>100_bases
CGAATACCTTGCCAACCGTCCCGAAGCCTAACGCCTCAAGTCCCCCTTACTTCAGGGGGATTTAGGGGATGTAAAACCAT
TAACCTACCGGAAAACCACC

Downstream 100 bases:

>100_bases
AGTTTGCTATTGTTGCAGGGCCTTGGCGATCGCCTTAAGGGCACGGGGGTCAGACAACATCCAAGGATGTAAAGGTACGG
GCAACTGCACGCCGGTGCCA

Product: dihydroorotate dehydrogenase 2

Products: NA

Alternate protein names: DHOdehase; DHOD; DHODase; Dihydroorotate oxidase [H]

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MDLTTQYLGLTLRSPLIVGAAAPLTEDIDNIKRMEDAGAGAVVLHSLFEEQIRKEKLELHHHFTYGTDSFAEALNYFPEN
ASNVFHVGVETYLEHIRTAKSAVDMPIIASLNGSHQGEWEHTAKLMEQAGADAIELNIYYVPTDINKNGSEVEYEYIQIV
RTVRENLNIPVAVKLSPFFSNMANIAKRLVDNGASGLVLFNRFYQPDIDIENLEVTPNLILSSPLDMRLPMRWIAMLYGR
LDVDFAATSGIQRGTDAIKMLMAGAKVTALVATLLRHGIHHIETIETEMMQWLEEHEYLSLEQLRGSMSQINCPDESAFE
RAQYMRAIQSYQPERHTL

Sequences:

>Translated_338_residues
MDLTTQYLGLTLRSPLIVGAAAPLTEDIDNIKRMEDAGAGAVVLHSLFEEQIRKEKLELHHHFTYGTDSFAEALNYFPEN
ASNVFHVGVETYLEHIRTAKSAVDMPIIASLNGSHQGEWEHTAKLMEQAGADAIELNIYYVPTDINKNGSEVEYEYIQIV
RTVRENLNIPVAVKLSPFFSNMANIAKRLVDNGASGLVLFNRFYQPDIDIENLEVTPNLILSSPLDMRLPMRWIAMLYGR
LDVDFAATSGIQRGTDAIKMLMAGAKVTALVATLLRHGIHHIETIETEMMQWLEEHEYLSLEQLRGSMSQINCPDESAFE
RAQYMRAIQSYQPERHTL
>Mature_338_residues
MDLTTQYLGLTLRSPLIVGAAAPLTEDIDNIKRMEDAGAGAVVLHSLFEEQIRKEKLELHHHFTYGTDSFAEALNYFPEN
ASNVFHVGVETYLEHIRTAKSAVDMPIIASLNGSHQGEWEHTAKLMEQAGADAIELNIYYVPTDINKNGSEVEYEYIQIV
RTVRENLNIPVAVKLSPFFSNMANIAKRLVDNGASGLVLFNRFYQPDIDIENLEVTPNLILSSPLDMRLPMRWIAMLYGR
LDVDFAATSGIQRGTDAIKMLMAGAKVTALVATLLRHGIHHIETIETEMMQWLEEHEYLSLEQLRGSMSQINCPDESAFE
RAQYMRAIQSYQPERHTL

Specific function: Unknown

COG id: COG0167

COG function: function code F; Dihydroorotate dehydrogenase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082059, Length=326, Percent_Identity=21.4723926380368, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR005720
- InterPro:   IPR012135
- InterPro:   IPR001295 [H]

Pfam domain/function: PF01180 DHO_dh [H]

EC number: =1.3.3.1 [H]

Molecular weight: Translated: 38152; Mature: 38152

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLTTQYLGLTLRSPLIVGAAAPLTEDIDNIKRMEDAGAGAVVLHSLFEEQIRKEKLELH
CCCCHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
HHFTYGTDSFAEALNYFPENASNVFHVGVETYLEHIRTAKSAVDMPIIASLNGSHQGEWE
HHCCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHH
HTAKLMEQAGADAIELNIYYVPTDINKNGSEVEYEYIQIVRTVRENLNIPVAVKLSPFFS
HHHHHHHHCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHH
NMANIAKRLVDNGASGLVLFNRFYQPDIDIENLEVTPNLILSSPLDMRLPMRWIAMLYGR
HHHHHHHHHHHCCCCCEEEEHHHCCCCCCCCCEEECCCHHCCCCCCCCCCHHHHHHHHHH
LDVDFAATSGIQRGTDAIKMLMAGAKVTALVATLLRHGIHHIETIETEMMQWLEEHEYLS
CCCCHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LEQLRGSMSQINCPDESAFERAQYMRAIQSYQPERHTL
HHHHHCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDLTTQYLGLTLRSPLIVGAAAPLTEDIDNIKRMEDAGAGAVVLHSLFEEQIRKEKLELH
CCCCHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
HHFTYGTDSFAEALNYFPENASNVFHVGVETYLEHIRTAKSAVDMPIIASLNGSHQGEWE
HHCCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHH
HTAKLMEQAGADAIELNIYYVPTDINKNGSEVEYEYIQIVRTVRENLNIPVAVKLSPFFS
HHHHHHHHCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHH
NMANIAKRLVDNGASGLVLFNRFYQPDIDIENLEVTPNLILSSPLDMRLPMRWIAMLYGR
HHHHHHHHHHHCCCCCEEEEHHHCCCCCCCCCEEECCCHHCCCCCCCCCCHHHHHHHHHH
LDVDFAATSGIQRGTDAIKMLMAGAKVTALVATLLRHGIHHIETIETEMMQWLEEHEYLS
CCCCHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LEQLRGSMSQINCPDESAFERAQYMRAIQSYQPERHTL
HHHHHCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]