| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is yycG [H]
Identifier: 170077998
GI number: 170077998
Start: 1448359
End: 1450362
Strand: Reverse
Name: yycG [H]
Synonym: SYNPCC7002_A1384
Alternate gene names: 170077998
Gene position: 1450362-1448359 (Counterclockwise)
Preceding gene: 170077999
Following gene: 170077994
Centisome position: 48.22
GC content: 51.8
Gene sequence:
>2004_bases ATGAGTATTCAAACCTCGGTTGTCAAACAATTATTTGAAGCCGTTCCCCATGGGCGATCGCAACTCTATTTCAAATCTTC CCTAACGGCACTCTCCCACGCGATGGAAGATCAAATCCTTGCAGGTCAAGATTCCCCCTTGGTGATCGCCAGCTTCCAGC AAGAAAGATACTACCGCCAGGAAGCAACCCGTTATCGTCGCATTGCCGATAAATCCCAACAGGTTTACGTCCTCGCGGCC CCAGAAACAGAATTTGAAAACGCTTCTGATGCCTACGAGCGCATTGCCTTTACGCCAGATGATGCCCTAAGCGAAGAGTG GCACCTCGTGGTGATTGGGGAAAATTTTGCCAGTTGTCTCCTCTGCCGAGAAAAACACAACAATTCTGAAAAAGGAGATC ATTTCGCCGATAATGCCCGTCGTTTTGAAGGCATTTGGACCGAAGACCGCAACATTACCGAAAAAGCAGCGGAAATCCTC CTCGATCGCATTGCCCAATATCGCCCGGAGCTCCAGGAAAAAGTTCAAGCGGCCAAGGAAACTTACCTCCAAAATGGTCA CCAAGATCTAACGGAACATCAGCCTAGTTCCACCGCCGATCCCTTTGTGCAGCGCTTGGTGAACTATCTCCAGGCGGGTC AATACAAAATCCTTAAAGCCAACCGCTCCCTGGCAAACAAAGAACAAAAGGAGCGTTTAATTAATACGGTCACAGCAGCC ATTCGGCGATCGCTCGACACCGAAGACATCTTGCAATTGGCCGTCGAAAAATTAGGAGAAGGTCTCGGAGTCTGTCGCTG CATTATTTACCGTTGCAAAGAGTCGGACGAACAAGCCCAGATCCAGCATGAATTTCTCCATGGGGATCAAATTTCTGTAA AAGGTCGCAATTGGCCCCTGAAGGATAATCCCCTCTTTCAAAAAGTTGTCTCCCTGGGGGAAGCCCTCGGCATTGATAAT ACCGAGCAAGATCCAGACTTTATCAAAGACCAGCTAGAAACCCTCACCCAAACCTGTTCCATTGTCTCCTGGCTACTGGT GCCGGTACTCTACCAAGGGCGACTGATCGGCATGATCGAGTTACATCACTGCCACCCAGAGGCAATCCACTGGCGACAGG AAGATATTGCCCTTGTCGGGGCGATCGCCATCCAAGTAGGTGTGGCCCTAATTCAGGCCGAAGCCTACAACAACCTCGAA GAACTCAACGAACAATTGGCGGCCCTTGACCGTACCCGTTCTAACCTTGTGGCGATCACAGGCCATGAACTCCGGACACC TTTATCGACGATTCAAGTCTGCCTAGAAAGCCTTGCCAATGAGCCGGATATGCCGGAGGAACTGCGCCAGGTGATGCTAG ATACCGCCCTCCAGGATGCAGAACGTCTGCGCACCCTCGTCCAGGATTTTCTGACCCTGTCCCAGCTCGAAAGTGGTCGG GTGGAGTGGAATATTGAACCCCTGATGCTCTATGAATGTGTGGAGCTGGCCATGAGCCACGTGCGGGCCAAACGTTATCA AAGTGGCGGTCAACCCCTGCCCCAACTGATCAATCAGGTTTCACCCGATTTGCCCCTCGTCCAAGCTGACGGAGAATGGC TCGTGGAGGTCATCGCCAAGTTGCTGGACAATGCCTGTAAATTTAGCGATGCCAAGCAGGGTCAAGTGGCGATCGCCATC ACCGCCGAAGATCCCCATAAACTCACCGTGAGCATTATCGATAATGGCCGGGGCATTGAACCTAAACGCCTCGAAACCGT CTTTGATCGCTTTTACCAAGAAGAAGGGGCATTGCGACGGAGCGCTGGCGGCACTGGCTTAGGATTAGCGATTTGTCGCC AGATTGTCACCGCCTGGGGGGGAGCGATCTGGGCAGAATCCGAAGGCAAAAATCAGGGGAGTCAATTTTCCTTTACGGTG CCGGTCTTTGAAGAACCCAGCCCACCGAAAACGAACCAGACCAGCAAAACAAAAACGAAAACGAAGCGTTCCCGGCGTCG CTAA
Upstream 100 bases:
>100_bases AAAATTGATCAATATTGGGTGATCAAGGATAATCTAGGGAATTCCTCTGGTCCATCGTTCGTAGAAGGCGACTATTCCTT TCGGGAAAAAGCATTTCTTA
Downstream 100 bases:
>100_bases CAAACGCTCACAAAACTGAGCAATTCACCTTAAGCTTTGTGAATATTCCCAACTAAATATCAGCATGGGCCTACAGAGGA CTAAGGGCGCAGGACAATAA
Product: sensory transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 667; Mature: 666
Protein sequence:
>667_residues MSIQTSVVKQLFEAVPHGRSQLYFKSSLTALSHAMEDQILAGQDSPLVIASFQQERYYRQEATRYRRIADKSQQVYVLAA PETEFENASDAYERIAFTPDDALSEEWHLVVIGENFASCLLCREKHNNSEKGDHFADNARRFEGIWTEDRNITEKAAEIL LDRIAQYRPELQEKVQAAKETYLQNGHQDLTEHQPSSTADPFVQRLVNYLQAGQYKILKANRSLANKEQKERLINTVTAA IRRSLDTEDILQLAVEKLGEGLGVCRCIIYRCKESDEQAQIQHEFLHGDQISVKGRNWPLKDNPLFQKVVSLGEALGIDN TEQDPDFIKDQLETLTQTCSIVSWLLVPVLYQGRLIGMIELHHCHPEAIHWRQEDIALVGAIAIQVGVALIQAEAYNNLE ELNEQLAALDRTRSNLVAITGHELRTPLSTIQVCLESLANEPDMPEELRQVMLDTALQDAERLRTLVQDFLTLSQLESGR VEWNIEPLMLYECVELAMSHVRAKRYQSGGQPLPQLINQVSPDLPLVQADGEWLVEVIAKLLDNACKFSDAKQGQVAIAI TAEDPHKLTVSIIDNGRGIEPKRLETVFDRFYQEEGALRRSAGGTGLGLAICRQIVTAWGGAIWAESEGKNQGSQFSFTV PVFEEPSPPKTNQTSKTKTKTKRSRRR
Sequences:
>Translated_667_residues MSIQTSVVKQLFEAVPHGRSQLYFKSSLTALSHAMEDQILAGQDSPLVIASFQQERYYRQEATRYRRIADKSQQVYVLAA PETEFENASDAYERIAFTPDDALSEEWHLVVIGENFASCLLCREKHNNSEKGDHFADNARRFEGIWTEDRNITEKAAEIL LDRIAQYRPELQEKVQAAKETYLQNGHQDLTEHQPSSTADPFVQRLVNYLQAGQYKILKANRSLANKEQKERLINTVTAA IRRSLDTEDILQLAVEKLGEGLGVCRCIIYRCKESDEQAQIQHEFLHGDQISVKGRNWPLKDNPLFQKVVSLGEALGIDN TEQDPDFIKDQLETLTQTCSIVSWLLVPVLYQGRLIGMIELHHCHPEAIHWRQEDIALVGAIAIQVGVALIQAEAYNNLE ELNEQLAALDRTRSNLVAITGHELRTPLSTIQVCLESLANEPDMPEELRQVMLDTALQDAERLRTLVQDFLTLSQLESGR VEWNIEPLMLYECVELAMSHVRAKRYQSGGQPLPQLINQVSPDLPLVQADGEWLVEVIAKLLDNACKFSDAKQGQVAIAI TAEDPHKLTVSIIDNGRGIEPKRLETVFDRFYQEEGALRRSAGGTGLGLAICRQIVTAWGGAIWAESEGKNQGSQFSFTV PVFEEPSPPKTNQTSKTKTKTKRSRRR >Mature_666_residues SIQTSVVKQLFEAVPHGRSQLYFKSSLTALSHAMEDQILAGQDSPLVIASFQQERYYRQEATRYRRIADKSQQVYVLAAP ETEFENASDAYERIAFTPDDALSEEWHLVVIGENFASCLLCREKHNNSEKGDHFADNARRFEGIWTEDRNITEKAAEILL DRIAQYRPELQEKVQAAKETYLQNGHQDLTEHQPSSTADPFVQRLVNYLQAGQYKILKANRSLANKEQKERLINTVTAAI RRSLDTEDILQLAVEKLGEGLGVCRCIIYRCKESDEQAQIQHEFLHGDQISVKGRNWPLKDNPLFQKVVSLGEALGIDNT EQDPDFIKDQLETLTQTCSIVSWLLVPVLYQGRLIGMIELHHCHPEAIHWRQEDIALVGAIAIQVGVALIQAEAYNNLEE LNEQLAALDRTRSNLVAITGHELRTPLSTIQVCLESLANEPDMPEELRQVMLDTALQDAERLRTLVQDFLTLSQLESGRV EWNIEPLMLYECVELAMSHVRAKRYQSGGQPLPQLINQVSPDLPLVQADGEWLVEVIAKLLDNACKFSDAKQGQVAIAIT AEDPHKLTVSIIDNGRGIEPKRLETVFDRFYQEEGALRRSAGGTGLGLAICRQIVTAWGGAIWAESEGKNQGSQFSFTVP VFEEPSPPKTNQTSKTKTKTKRSRRR
Specific function: Member of the two-component regulatory system YycG/YycF involved in the regulation of the ftsAZ operon, the yocH and ykvT, cwlO, lytE, ydjM, yjeA, yoeB genes and the tagAB and tagDEF operons. Probably phosphorylates YycF [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI145693157, Length=282, Percent_Identity=29.0780141843972, Blast_Score=103, Evalue=5e-23, Organism=Escherichia coli, GI1786600, Length=238, Percent_Identity=30.672268907563, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI1788393, Length=239, Percent_Identity=30.9623430962343, Blast_Score=91, Evalue=3e-19, Organism=Escherichia coli, GI1786912, Length=241, Percent_Identity=31.5352697095436, Blast_Score=89, Evalue=1e-18, Organism=Escherichia coli, GI87081816, Length=254, Percent_Identity=30.7086614173228, Blast_Score=89, Evalue=1e-18, Organism=Escherichia coli, GI48994928, Length=234, Percent_Identity=28.6324786324786, Blast_Score=87, Evalue=4e-18, Organism=Escherichia coli, GI1789149, Length=242, Percent_Identity=28.099173553719, Blast_Score=82, Evalue=2e-16, Organism=Escherichia coli, GI1788713, Length=234, Percent_Identity=26.4957264957265, Blast_Score=80, Evalue=3e-16, Organism=Escherichia coli, GI1786783, Length=354, Percent_Identity=24.2937853107345, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI1788549, Length=251, Percent_Identity=28.2868525896414, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1790436, Length=242, Percent_Identity=28.5123966942149, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1787894, Length=258, Percent_Identity=26.3565891472868, Blast_Score=70, Evalue=5e-13, Organism=Escherichia coli, GI1790346, Length=230, Percent_Identity=26.9565217391304, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1790861, Length=228, Percent_Identity=27.6315789473684, Blast_Score=63, Evalue=5e-11, Organism=Escherichia coli, GI1787374, Length=218, Percent_Identity=29.8165137614679, Blast_Score=62, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6322044, Length=82, Percent_Identity=43.9024390243902, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 75262; Mature: 75131
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: PS50109 HIS_KIN ; PS50046 PHYTOCHROME_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIQTSVVKQLFEAVPHGRSQLYFKSSLTALSHAMEDQILAGQDSPLVIASFQQERYYRQ CCCHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHH EATRYRRIADKSQQVYVLAAPETEFENASDAYERIAFTPDDALSEEWHLVVIGENFASCL HHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHH LCREKHNNSEKGDHFADNARRFEGIWTEDRNITEKAAEILLDRIAQYRPELQEKVQAAKE HHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHH TYLQNGHQDLTEHQPSSTADPFVQRLVNYLQAGQYKILKANRSLANKEQKERLINTVTAA HHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHH IRRSLDTEDILQLAVEKLGEGLGVCRCIIYRCKESDEQAQIQHEFLHGDQISVKGRNWPL HHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEECCCCCCC KDNPLFQKVVSLGEALGIDNTEQDPDFIKDQLETLTQTCSIVSWLLVPVLYQGRLIGMIE CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE LHHCHPEAIHWRQEDIALVGAIAIQVGVALIQAEAYNNLEELNEQLAALDRTRSNLVAIT EECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEE GHELRTPLSTIQVCLESLANEPDMPEELRQVMLDTALQDAERLRTLVQDFLTLSQLESGR CHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC VEWNIEPLMLYECVELAMSHVRAKRYQSGGQPLPQLINQVSPDLPLVQADGEWLVEVIAK EEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEECCCHHHHHHHHH LLDNACKFSDAKQGQVAIAITAEDPHKLTVSIIDNGRGIEPKRLETVFDRFYQEEGALRR HHHHHHCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHH SAGGTGLGLAICRQIVTAWGGAIWAESEGKNQGSQFSFTVPVFEEPSPPKTNQTSKTKTK CCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHH TKRSRRR HHHHCCC >Mature Secondary Structure SIQTSVVKQLFEAVPHGRSQLYFKSSLTALSHAMEDQILAGQDSPLVIASFQQERYYRQ CCHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHH EATRYRRIADKSQQVYVLAAPETEFENASDAYERIAFTPDDALSEEWHLVVIGENFASCL HHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHH LCREKHNNSEKGDHFADNARRFEGIWTEDRNITEKAAEILLDRIAQYRPELQEKVQAAKE HHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHH TYLQNGHQDLTEHQPSSTADPFVQRLVNYLQAGQYKILKANRSLANKEQKERLINTVTAA HHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHH IRRSLDTEDILQLAVEKLGEGLGVCRCIIYRCKESDEQAQIQHEFLHGDQISVKGRNWPL HHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEECCCCCCC KDNPLFQKVVSLGEALGIDNTEQDPDFIKDQLETLTQTCSIVSWLLVPVLYQGRLIGMIE CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE LHHCHPEAIHWRQEDIALVGAIAIQVGVALIQAEAYNNLEELNEQLAALDRTRSNLVAIT EECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEE GHELRTPLSTIQVCLESLANEPDMPEELRQVMLDTALQDAERLRTLVQDFLTLSQLESGR CHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC VEWNIEPLMLYECVELAMSHVRAKRYQSGGQPLPQLINQVSPDLPLVQADGEWLVEVIAK EEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEECCCHHHHHHHHH LLDNACKFSDAKQGQVAIAITAEDPHKLTVSIIDNGRGIEPKRLETVFDRFYQEEGALRR HHHHHHCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHH SAGGTGLGLAICRQIVTAWGGAIWAESEGKNQGSQFSFTVPVFEEPSPPKTNQTSKTKTK CCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHH TKRSRRR HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377; 9829949; 10878122; 11758928 [H]