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The map label for this gene is rpaA [H]

Identifier: 170077923

GI number: 170077923

Start: 1362073

End: 1362822

Strand: Reverse

Name: rpaA [H]

Synonym: SYNPCC7002_A1308

Alternate gene names: 170077923

Gene position: 1362822-1362073 (Counterclockwise)

Preceding gene: 170077924

Following gene: 170077914

Centisome position: 45.31

GC content: 52.67

Gene sequence:

>750_bases
ATGCCTCGAATTTTAATTATTGATGATGATCCGGCGATCGCCGAATTGGTTGCGATAAACCTTGAAATGGCGGGTTATGA
CGTCAGTCGTGCCGAAGACGGTATTAAAGGTCAGGCATTGGCGGTGCAGCTACAACCCGATTTGGTCATGCTGGATCTGA
TGTTGCCGAAAGTGGACGGGTTTACCGTTTGTCAACGGATCCGGCGGGAAGAACGCACAGCAGATATCCCCATTTTGATG
TTAACCGCCCTGGGGCAGACCCAAGATAAGGTAGATGGCTTTAACGCGGGGGCCGATGATTACCTCACGAAGCCCTTTGA
AGTCGAAGAAATGTTGGTGCGGGTGCGGGCTTTATTGCGACGGAGCGATCGCATTCCCCAGGCCGCCAAACACACAGAAA
TTTTAAACTACGGCCCGTTAACGTTAATCCCAGAGCGATTCGAGGCGATTTGGTTTGATCAGACCATCAAATTGACTCAC
CTTGAATTTGAATTGCTCCACTGTCTCCTGCAACGTCACGGCCAGACCATTTCTCCCAGCGAAATCCTCAAGGAAGTGTG
GGGTTATGATCCTTCCGATGATATCGAGACCATCCGGGTGCACGTTCGCCACCTGCGCACGAAGTTAGAGCCGGAGCCCC
GTCGTCCCCAGTACATCAAAACGGTTTATGGGGCGGGTTACTGCCTGGAGTTGCCGTCGCGGGTGAACCACGGGGAGACA
ACTCAGGTCTCGGAGCCAATGAACTCCTAG

Upstream 100 bases:

>100_bases
CATAAATTTTGATTGTCATGACCGGGGAATTTTGTGAAAATTCCTTAATCCTTTTGAATTTTCCTTTTAAGATAGAAGCA
GTTGCTTTAGCTTGGTTGTG

Downstream 100 bases:

>100_bases
GCCCAAGTTTGCTTTGGCGTTAATTGATCAGCGCTCAAAGGTAATGGAGCCAGCGGAGTCCCCAGTTTCTCAGGCGATCG
CACTGGGCAAAGCGGCCATA

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MPRILIIDDDPAIAELVAINLEMAGYDVSRAEDGIKGQALAVQLQPDLVMLDLMLPKVDGFTVCQRIRREERTADIPILM
LTALGQTQDKVDGFNAGADDYLTKPFEVEEMLVRVRALLRRSDRIPQAAKHTEILNYGPLTLIPERFEAIWFDQTIKLTH
LEFELLHCLLQRHGQTISPSEILKEVWGYDPSDDIETIRVHVRHLRTKLEPEPRRPQYIKTVYGAGYCLELPSRVNHGET
TQVSEPMNS

Sequences:

>Translated_249_residues
MPRILIIDDDPAIAELVAINLEMAGYDVSRAEDGIKGQALAVQLQPDLVMLDLMLPKVDGFTVCQRIRREERTADIPILM
LTALGQTQDKVDGFNAGADDYLTKPFEVEEMLVRVRALLRRSDRIPQAAKHTEILNYGPLTLIPERFEAIWFDQTIKLTH
LEFELLHCLLQRHGQTISPSEILKEVWGYDPSDDIETIRVHVRHLRTKLEPEPRRPQYIKTVYGAGYCLELPSRVNHGET
TQVSEPMNS
>Mature_248_residues
PRILIIDDDPAIAELVAINLEMAGYDVSRAEDGIKGQALAVQLQPDLVMLDLMLPKVDGFTVCQRIRREERTADIPILML
TALGQTQDKVDGFNAGADDYLTKPFEVEEMLVRVRALLRRSDRIPQAAKHTEILNYGPLTLIPERFEAIWFDQTIKLTHL
EFELLHCLLQRHGQTISPSEILKEVWGYDPSDDIETIRVHVRHLRTKLEPEPRRPQYIKTVYGAGYCLELPSRVNHGETT
QVSEPMNS

Specific function: Member of the two-component regulatory system YycG/YycF involved in the regulation of the ftsAZ operon, the yocH, ykvT, cwlO, lytE, ydjM, yjeA, yoeB genes and the tagAB and tagDEF operons. Probably phosphorylates YycF. Binds to the ftsAZ P1 promoter seque

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786599, Length=225, Percent_Identity=35.5555555555556, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI1788394, Length=230, Percent_Identity=37.3913043478261, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI1786784, Length=230, Percent_Identity=35.6521739130435, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI87082012, Length=227, Percent_Identity=35.2422907488987, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1789809, Length=229, Percent_Identity=33.1877729257642, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1786911, Length=241, Percent_Identity=32.7800829875519, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI2367329, Length=232, Percent_Identity=36.2068965517241, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1787375, Length=230, Percent_Identity=32.1739130434783, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1789402, Length=227, Percent_Identity=33.920704845815, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1790860, Length=227, Percent_Identity=31.7180616740088, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1790552, Length=231, Percent_Identity=33.3333333333333, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1790863, Length=230, Percent_Identity=29.1304347826087, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI1787229, Length=233, Percent_Identity=30.4721030042918, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI145693140, Length=236, Percent_Identity=29.2372881355932, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788550, Length=118, Percent_Identity=31.3559322033898, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788713, Length=124, Percent_Identity=30.6451612903226, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 28393; Mature: 28262

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRILIIDDDPAIAELVAINLEMAGYDVSRAEDGIKGQALAVQLQPDLVMLDLMLPKVDG
CCEEEEECCCCHHHHHHHEEHHCCCCCHHHHCCCCCCCEEEEEECCCEEEEEHHHCCCCH
FTVCQRIRREERTADIPILMLTALGQTQDKVDGFNAGADDYLTKPFEVEEMLVRVRALLR
HHHHHHHHHHHHCCCCCEEEEECCCCCHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHH
RSDRIPQAAKHTEILNYGPLTLIPERFEAIWFDQTIKLTHLEFELLHCLLQRHGQTISPS
HHCCCCCHHHHHHHCCCCCCEECHHHHHHEECCCEEEEEHHHHHHHHHHHHHCCCCCCHH
EILKEVWGYDPSDDIETIRVHVRHLRTKLEPEPRRPQYIKTVYGAGYCLELPSRVNHGET
HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCEEEECCCCCCCCCC
TQVSEPMNS
CCCCCCCCC
>Mature Secondary Structure 
PRILIIDDDPAIAELVAINLEMAGYDVSRAEDGIKGQALAVQLQPDLVMLDLMLPKVDG
CEEEEECCCCHHHHHHHEEHHCCCCCHHHHCCCCCCCEEEEEECCCEEEEEHHHCCCCH
FTVCQRIRREERTADIPILMLTALGQTQDKVDGFNAGADDYLTKPFEVEEMLVRVRALLR
HHHHHHHHHHHHCCCCCEEEEECCCCCHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHH
RSDRIPQAAKHTEILNYGPLTLIPERFEAIWFDQTIKLTHLEFELLHCLLQRHGQTISPS
HHCCCCCHHHHHHHCCCCCCEECHHHHHHEECCCEEEEEHHHHHHHHHHHHHCCCCCCHH
EILKEVWGYDPSDDIETIRVHVRHLRTKLEPEPRRPQYIKTVYGAGYCLELPSRVNHGET
HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCEEEECCCCCCCCCC
TQVSEPMNS
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 9829949; 10878122 [H]