Click here to switch to the map view.

The map label for this gene is psbW

Identifier: 170077874

GI number: 170077874

Start: 1299649

End: 1299984

Strand: Direct

Name: psbW

Synonym: SYNPCC7002_A1258

Alternate gene names: 170077874

Gene position: 1299649-1299984 (Clockwise)

Preceding gene: 170077873

Following gene: 170077875

Centisome position: 43.21

GC content: 50.0

Gene sequence:

>336_bases
ATGGCCGTTATTCAGTTTTCCCAAGGCGTTAATGAACCCGAAGTTCCCGGTATCCGCTTAACCCGTTCCCCCGATGGTAG
TACCGGCACCGCTGTATTTTCCTTTGAAGATCCCGCCGCCCTCGCCCAAGAAAGTACCGATGAAATTACGGGTATGTACC
TCATCGACGAAGAAGGCGAAATTGTCACCCGCGAAGTCAAAGCAAAATTTTATGATGGGAAACCACGCATTATTGAAGCG
CGCTTGGTGATGCGCTCGACCGCTGAATGGGATCGTTTTATGCGGTTTATGGAACGTTATGCGGCGGAAAACGGCCTCGA
ATTTACTAAAGCCTAG

Upstream 100 bases:

>100_bases
TTGTTAAAAAAGTCCCGCTTTTCCCGACCCAGGCCATCAACAAACCGATGGGAGTATGAGAAGATAGGGGCACAAATATA
TGAAGAAAAATTAAATTATT

Downstream 100 bases:

>100_bases
GCCCGGCCAAACGTCTCTCCGTCCTTGGTATTCGGTTGCCTGCTCCAGGAATATTGCCTGTCACGGTTGCGCAAATTATG
ATGCGTCAGATTATGGCTTG

Product: photosystem II reaction center protein Psb28

Products: NA

Alternate protein names: Photosystem II 13 kDa protein; Photosystem II reaction center W protein

Number of amino acids: Translated: 111; Mature: 110

Protein sequence:

>111_residues
MAVIQFSQGVNEPEVPGIRLTRSPDGSTGTAVFSFEDPAALAQESTDEITGMYLIDEEGEIVTREVKAKFYDGKPRIIEA
RLVMRSTAEWDRFMRFMERYAAENGLEFTKA

Sequences:

>Translated_111_residues
MAVIQFSQGVNEPEVPGIRLTRSPDGSTGTAVFSFEDPAALAQESTDEITGMYLIDEEGEIVTREVKAKFYDGKPRIIEA
RLVMRSTAEWDRFMRFMERYAAENGLEFTKA
>Mature_110_residues
AVIQFSQGVNEPEVPGIRLTRSPDGSTGTAVFSFEDPAALAQESTDEITGMYLIDEEGEIVTREVKAKFYDGKPRIIEAR
LVMRSTAEWDRFMRFMERYAAENGLEFTKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psb28 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSB28_SYNP2 (B1XL01)

Other databases:

- EMBL:   CP000951
- RefSeq:   YP_001734512.1
- GeneID:   6055642
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A1258
- HOGENOM:   HBG493836
- OMA:   RFANSYA
- ProtClustDB:   PRK13612
- GO:   GO:0015979
- HAMAP:   MF_01370
- InterPro:   IPR005610
- ProDom:   PD012692
- TIGRFAMs:   TIGR03047

Pfam domain/function: PF03912 Psb28

EC number: NA

Molecular weight: Translated: 12516; Mature: 12385

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVIQFSQGVNEPEVPGIRLTRSPDGSTGTAVFSFEDPAALAQESTDEITGMYLIDEEGE
CEEEECCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCHHHHHCCCCCCEEEEEECCCCC
IVTREVKAKFYDGKPRIIEARLVMRSTAEWDRFMRFMERYAAENGLEFTKA
EEEEEEEEEEECCCCEEEEHHHHHHCHHHHHHHHHHHHHHHHCCCCEECCC
>Mature Secondary Structure 
AVIQFSQGVNEPEVPGIRLTRSPDGSTGTAVFSFEDPAALAQESTDEITGMYLIDEEGE
EEEECCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCHHHHHCCCCCCEEEEEECCCCC
IVTREVKAKFYDGKPRIIEARLVMRSTAEWDRFMRFMERYAAENGLEFTKA
EEEEEEEEEEECCCCEEEEHHHHHHCHHHHHHHHHHHHHHHHCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA