| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170077796
Identifier: 170077796
GI number: 170077796
Start: 1220967
End: 1221605
Strand: Reverse
Name: 170077796
Synonym: SYNPCC7002_A1179
Alternate gene names: NA
Gene position: 1221605-1220967 (Counterclockwise)
Preceding gene: 170077797
Following gene: 170077793
Centisome position: 40.61
GC content: 47.57
Gene sequence:
>639_bases ATGAAATCTAAATTTTTACTTTTTTTGAGTGTCGCAACGCTTCAGGCTGCTCTATTCGGCTGCGGACTCGTTGGCAATAA TACGTCCGGTGAGCAAAATACTTCAGGTACAGAAGAAACAACCAGTGAATCAACCGCGACGAATGAGTCAACCAACGTCA CGGCAGATTGGGTTGATTTTCAAACGGAAAATGGCAAACTCGCAGTTAAATTTCCAGGTACGCCTCAAACGGAAAGTCAA ACGACCCCCTCTGATCTGGGTGAACTACAGTTCACAATGACTTCCTACGCGGACGACGCCAATACGCAATTTTTTATGGT GAGTAGTGTTACGTATCCGGTTTCTCCTGATCAATATGATGCGGCCCAGGGACTTGAAGCGGCCAAGGAAGGGGCGGCCA GCAACTCAGGTTCGACAATTGTTTCTGATGAGCCAAGTGATAAGTTTGGGATTCCGGGGAAAAAATTGGTGATGAACGCC GCCCAGGATAATGGCGAAGTTTATACCACCCGCGCTGAAATCTACATCGATCCCAACGGCCCCACCCTCCACCAAATTTT GATGGTGACGGAAGGCGATCGCGTGGATAGTCCAGAAGCCAACGCATTTTTTGATTCCGTCAATATTACGCCTATCTAA
Upstream 100 bases:
>100_bases AATGTTTAGGATTGCAGAAAGCAGCCCATCGTTTTGTGCCTCGTTATTTTTGGCATGGAGGAGGTCACGGGCTCAATTTA AAATGTTGGTCTAAAATTTT
Downstream 100 bases:
>100_bases ACTTTTCGGTTGGTAAAAAAAGCCTGATATAGCAATAGCCCCGATGAATCAACACCAGGGCTATTTTTTTATGGTCTTTT TATGGCCAAAATTTAAAGGG
Product: putative lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 212; Mature: 212
Protein sequence:
>212_residues MKSKFLLFLSVATLQAALFGCGLVGNNTSGEQNTSGTEETTSESTATNESTNVTADWVDFQTENGKLAVKFPGTPQTESQ TTPSDLGELQFTMTSYADDANTQFFMVSSVTYPVSPDQYDAAQGLEAAKEGAASNSGSTIVSDEPSDKFGIPGKKLVMNA AQDNGEVYTTRAEIYIDPNGPTLHQILMVTEGDRVDSPEANAFFDSVNITPI
Sequences:
>Translated_212_residues MKSKFLLFLSVATLQAALFGCGLVGNNTSGEQNTSGTEETTSESTATNESTNVTADWVDFQTENGKLAVKFPGTPQTESQ TTPSDLGELQFTMTSYADDANTQFFMVSSVTYPVSPDQYDAAQGLEAAKEGAASNSGSTIVSDEPSDKFGIPGKKLVMNA AQDNGEVYTTRAEIYIDPNGPTLHQILMVTEGDRVDSPEANAFFDSVNITPI >Mature_212_residues MKSKFLLFLSVATLQAALFGCGLVGNNTSGEQNTSGTEETTSESTATNESTNVTADWVDFQTENGKLAVKFPGTPQTESQ TTPSDLGELQFTMTSYADDANTQFFMVSSVTYPVSPDQYDAAQGLEAAKEGAASNSGSTIVSDEPSDKFGIPGKKLVMNA AQDNGEVYTTRAEIYIDPNGPTLHQILMVTEGDRVDSPEANAFFDSVNITPI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22566; Mature: 22566
Theoretical pI: Translated: 3.81; Mature: 3.81
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSKFLLFLSVATLQAALFGCGLVGNNTSGEQNTSGTEETTSESTATNESTNVTADWVDF CCCEEEEEEEHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE QTENGKLAVKFPGTPQTESQTTPSDLGELQFTMTSYADDANTQFFMVSSVTYPVSPDQYD EECCCEEEEECCCCCCCCCCCCCCHHCEEEEEEEECCCCCCCEEEEEEEEECCCCCCCCC AAQGLEAAKEGAASNSGSTIVSDEPSDKFGIPGKKLVMNAAQDNGEVYTTRAEIYIDPNG HHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHEEEECCCCCCEEEEEEEEEEECCCC PTLHQILMVTEGDRVDSPEANAFFDSVNITPI CCEEEEEEEECCCCCCCCCCCEEEECEEECCC >Mature Secondary Structure MKSKFLLFLSVATLQAALFGCGLVGNNTSGEQNTSGTEETTSESTATNESTNVTADWVDF CCCEEEEEEEHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE QTENGKLAVKFPGTPQTESQTTPSDLGELQFTMTSYADDANTQFFMVSSVTYPVSPDQYD EECCCEEEEECCCCCCCCCCCCCCHHCEEEEEEEECCCCCCCEEEEEEEEECCCCCCCCC AAQGLEAAKEGAASNSGSTIVSDEPSDKFGIPGKKLVMNAAQDNGEVYTTRAEIYIDPNG HHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHEEEECCCCCCEEEEEEEEEEECCCC PTLHQILMVTEGDRVDSPEANAFFDSVNITPI CCEEEEEEEECCCCCCCCCCCEEEECEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA