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The map label for this gene is ispF [H]

Identifier: 170077783

GI number: 170077783

Start: 1197446

End: 1197925

Strand: Reverse

Name: ispF [H]

Synonym: SYNPCC7002_A1166

Alternate gene names: 170077783

Gene position: 1197925-1197446 (Counterclockwise)

Preceding gene: 170077788

Following gene: 170077782

Centisome position: 39.82

GC content: 50.42

Gene sequence:

>480_bases
ATGAAAATCCGCATTGGTAACGGTTACGATGTCCACCGTCTCGTGCCTGGTCGTCCCCTCATTTTGGGAGGCATTCAGCT
AGAACACCACCTCGGCTTAGATGGCCATAGCGACGCAGATGTTTTGACCCATGCGATTATGGATGCGATGTTGGGTGCCC
TCAGTTTGGGGGATATTGGCCATTATTTTCCGCCTACGGATCCCCAGTGGAAAGGGGCTGACAGCATTGAATTGCTCAAG
CAGGTACATCAACTCATCCAAGAACGGGGCTGGCAAATTGGCAATATTGACTCGGTGATTGTCGCTGAACGCCCGAAACT
GAAATCGCACATCCAAGCCATGACTCAATGTCTTGCTGAAGCCCTGGGAGTTGATCCAGATCAGGTGGGTGTTAAGGCCA
CAACCAATGAAAAACTAGATGCCATGGGTGAGGAAAAGGGAATTTGTGTCCATGCTGTCGCCCTGTTAGTGCAAGTATGA

Upstream 100 bases:

>100_bases
AGAAATTAGCTTAGCCTCAGAAATTTATCGCCGTCACACCCAGAAAATAAAAAGAGATATGCTACCCTAACCAGTGACTT
TATGCCCGCCCCTAACTCCT

Downstream 100 bases:

>100_bases
GTCATGGATAATGAAAGTTAAAGAAATTATCAAACTTATAGAACAAGATGGTTGGAGCCTCACTAGAACTCGCGGAAGTC
ACCGTCAGTACAAGCATCCA

Product: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Products: NA

Alternate protein names: MECDP-synthase; MECPS [H]

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MKIRIGNGYDVHRLVPGRPLILGGIQLEHHLGLDGHSDADVLTHAIMDAMLGALSLGDIGHYFPPTDPQWKGADSIELLK
QVHQLIQERGWQIGNIDSVIVAERPKLKSHIQAMTQCLAEALGVDPDQVGVKATTNEKLDAMGEEKGICVHAVALLVQV

Sequences:

>Translated_159_residues
MKIRIGNGYDVHRLVPGRPLILGGIQLEHHLGLDGHSDADVLTHAIMDAMLGALSLGDIGHYFPPTDPQWKGADSIELLK
QVHQLIQERGWQIGNIDSVIVAERPKLKSHIQAMTQCLAEALGVDPDQVGVKATTNEKLDAMGEEKGICVHAVALLVQV
>Mature_159_residues
MKIRIGNGYDVHRLVPGRPLILGGIQLEHHLGLDGHSDADVLTHAIMDAMLGALSLGDIGHYFPPTDPQWKGADSIELLK
QVHQLIQERGWQIGNIDSVIVAERPKLKSHIQAMTQCLAEALGVDPDQVGVKATTNEKLDAMGEEKGICVHAVALLVQV

Specific function: Converts 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MECDP) and CMP [H]

COG id: COG0245

COG function: function code I; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ispF family [H]

Homologues:

Organism=Escherichia coli, GI1789103, Length=156, Percent_Identity=50, Blast_Score=142, Evalue=8e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003526
- InterPro:   IPR020555 [H]

Pfam domain/function: PF02542 YgbB [H]

EC number: =4.6.1.12 [H]

Molecular weight: Translated: 17229; Mature: 17229

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS01350 ISPF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIRIGNGYDVHRLVPGRPLILGGIQLEHHLGLDGHSDADVLTHAIMDAMLGALSLGDIG
CEEECCCCCCEEEECCCCCEEEECEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
HYFPPTDPQWKGADSIELLKQVHQLIQERGWQIGNIDSVIVAERPKLKSHIQAMTQCLAE
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
ALGVDPDQVGVKATTNEKLDAMGEEKGICVHAVALLVQV
HHCCCHHHCCCEECCCCHHHHCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKIRIGNGYDVHRLVPGRPLILGGIQLEHHLGLDGHSDADVLTHAIMDAMLGALSLGDIG
CEEECCCCCCEEEECCCCCEEEECEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
HYFPPTDPQWKGADSIELLKQVHQLIQERGWQIGNIDSVIVAERPKLKSHIQAMTQCLAE
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
ALGVDPDQVGVKATTNEKLDAMGEEKGICVHAVALLVQV
HHCCCHHHCCCEECCCCHHHHCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA