Click here to switch to the map view.

The map label for this gene is ygdH [C]

Identifier: 170077772

GI number: 170077772

Start: 1187249

End: 1187890

Strand: Direct

Name: ygdH [C]

Synonym: SYNPCC7002_A1154

Alternate gene names: 170077772

Gene position: 1187249-1187890 (Clockwise)

Preceding gene: 170077771

Following gene: 170077775

Centisome position: 39.47

GC content: 54.21

Gene sequence:

>642_bases
GTGCAAGAAGCCGTGTTATCCCTCTGGCAAGTGGTCAATGGCCTGAGTAGTATTCAGCCGCCCCGCCGCGATCGCTATCG
CGTGACAATTTTTGGTTCGGCCCGGATTACCCGTGACTCGCCCCTCTACCAAGACGTGCGCCGCTTAGCCAGTGAGTTGA
CGACCCTCGGCTGTGACATTGTGACGGGGGGTGGCCCTGGTTTGATGGAAGCAGCGAACGAAGGCAGTGTTTTAGCAGAT
CCCCATGACCGGACAAAATCCATTGGTATTCGCGTGGATTTGGGGTTTGAACAGGAGGTTAATCCCTTTGTCGAAGAGGT
GTTTCAGCACCAGACTTTTTTCTCACGCCTGCACCATTTCGTTTTGGTTTCCGATGCGTTTGTGGTGATGCCGGGGGGAA
TTGGGACAACCCTCGAAGCGTTGATGATTTGGCAATTGCTCCAGGTGCGTTCGATCCATAATATGCCGTTTATTTTGGTG
GGCGACATGTGGACAGAATTAGTCCAGTGGGCCGAACAAACCATGGTGCCCCAGATGGCCGATGCAGTGGATTTTGAAAT
TCCTGTGTGTGTTGGGTCGGTGGATGAGGCGATCGCCCGTTTGAAACTCTCCCATCAGGCCTGGGCGCAATGCTCCCCCT
AG

Upstream 100 bases:

>100_bases
CCATTACCGGGCAAAAATCACCATGAAAAACGAAGCGAACGGCCAACCTTCCCCTTGCTTTCCTGTTAGCCTCAGCGAAC
AGACCATGAGCTATGACATT

Downstream 100 bases:

>100_bases
CTTTTTTCTGCCCGGTAGGTGTAGAACTGCTGGAAGATGCCCACCGTCTCAAAGGAGTACCGTGGAAAGGGCTCCGGCAA
AACGATATCCGTTTGGTAGA

Product: putative lysine decarboxylase

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MQEAVLSLWQVVNGLSSIQPPRRDRYRVTIFGSARITRDSPLYQDVRRLASELTTLGCDIVTGGGPGLMEAANEGSVLAD
PHDRTKSIGIRVDLGFEQEVNPFVEEVFQHQTFFSRLHHFVLVSDAFVVMPGGIGTTLEALMIWQLLQVRSIHNMPFILV
GDMWTELVQWAEQTMVPQMADAVDFEIPVCVGSVDEAIARLKLSHQAWAQCSP

Sequences:

>Translated_213_residues
MQEAVLSLWQVVNGLSSIQPPRRDRYRVTIFGSARITRDSPLYQDVRRLASELTTLGCDIVTGGGPGLMEAANEGSVLAD
PHDRTKSIGIRVDLGFEQEVNPFVEEVFQHQTFFSRLHHFVLVSDAFVVMPGGIGTTLEALMIWQLLQVRSIHNMPFILV
GDMWTELVQWAEQTMVPQMADAVDFEIPVCVGSVDEAIARLKLSHQAWAQCSP
>Mature_213_residues
MQEAVLSLWQVVNGLSSIQPPRRDRYRVTIFGSARITRDSPLYQDVRRLASELTTLGCDIVTGGGPGLMEAANEGSVLAD
PHDRTKSIGIRVDLGFEQEVNPFVEEVFQHQTFFSRLHHFVLVSDAFVVMPGGIGTTLEALMIWQLLQVRSIHNMPFILV
GDMWTELVQWAEQTMVPQMADAVDFEIPVCVGSVDEAIARLKLSHQAWAQCSP

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23749; Mature: 23749

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEAVLSLWQVVNGLSSIQPPRRDRYRVTIFGSARITRDSPLYQDVRRLASELTTLGCDI
CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCHHHHHHHHHHHHHHHHCCEE
VTGGGPGLMEAANEGSVLADPHDRTKSIGIRVDLGFEQEVNPFVEEVFQHQTFFSRLHHF
EECCCCCHHHCCCCCCEEECCCCHHHEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
VLVSDAFVVMPGGIGTTLEALMIWQLLQVRSIHNMPFILVGDMWTELVQWAEQTMVPQMA
HHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHH
DAVDFEIPVCVGSVDEAIARLKLSHQAWAQCSP
HHCCCCCCEEECCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQEAVLSLWQVVNGLSSIQPPRRDRYRVTIFGSARITRDSPLYQDVRRLASELTTLGCDI
CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCHHHHHHHHHHHHHHHHCCEE
VTGGGPGLMEAANEGSVLADPHDRTKSIGIRVDLGFEQEVNPFVEEVFQHQTFFSRLHHF
EECCCCCHHHCCCCCCEEECCCCHHHEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
VLVSDAFVVMPGGIGTTLEALMIWQLLQVRSIHNMPFILVGDMWTELVQWAEQTMVPQMA
HHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHH
DAVDFEIPVCVGSVDEAIARLKLSHQAWAQCSP
HHCCCCCCEEECCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA