| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is glmS [H]
Identifier: 170077768
GI number: 170077768
Start: 1183450
End: 1185321
Strand: Reverse
Name: glmS [H]
Synonym: SYNPCC7002_A1150
Alternate gene names: 170077768
Gene position: 1185321-1183450 (Counterclockwise)
Preceding gene: 170077769
Following gene: 170077766
Centisome position: 39.41
GC content: 53.58
Gene sequence:
>1872_bases ATGTGTGGCATTGTGGGATATTTAGGCACGCAAGCGGCAACAGATATTCTGGTCTCAGGCTTAGAACGGCTAGAGTACCG GGGTTATGATTCGGCGGGCATTGCGACGATCTGGCAAGAAAAACTCCACTCGGTACGGGCCAAGGGCAAACTATATCGTC TCCGGGAGAAATTGGAAGGGAACAGTACCCCCGCCACCATTGGCATTGGTCACACCCGCTGGGCAACCCATGGGAAACCA GAGGAACATAATGCTCACCCCCATTTGGACATGGCGCAACGGGTGGCCGTGGTTCAAAATGGCATTGTGGAAAATTACCG GGAGTTGCGGGAAGAACTCCAGGGCAAAGGCTATACTTTCCTGTCGGAAACAGACACGGAAGTCATCCCCCATCTGATTG CGGATCTGCTCCAAACGACGAAATCTGAACCGGAACCCCTCCTCGCTGCGGTACAAAAGGCTGTGCAACGGTTGGAAGGA GCCTTTGCGATCGCCATTATTTGTGTGGACTATCCCGATGAATTGATCGTTGCCCGGCAGCAAGCGCCCTTGACCCTGGG GTTTGGCCAGGGGGAATTTTTCTGTGCCTCGGATATTACGGCATTAATTCCCCACACCCGGGCAGTTCTAACCCTCGAAA ACGGTGAAATGGCCCGGATGACGCCCCTGGGCATGGAAATTTATAATTTTGCGGGCGATCGCCTCAAAAAAGCCCCCCGC ACCCTCGACTGGAACCCCGGTCAAGTGGAAAAACAAGGCTTCCGGCACTACATGCTCAAGGAAATCTATGAGCAGCCGGC GGTGGTGCGCACCAACCTCGAAGTCTATCTCAATCCAGAAGCAGCCCAGCCGATCAACCTCGGTATTAATGACCCCACAT TTCTCGACAACATCGACCATATCCAAATCGTGGCCTGCGGTACCAGTTGGCACGCTAGCCTCGTGGGGAAATATTTACTC GAACAACTCGCTGGCATTCCCACCTTTGTGCACTATGCCTCGGAGTTTCGCTATTCTCCTTCACCGATCATGCCCAATAC CCTGACCATTGGCGTGACCCAGTCCGGTGAAACCGCCGATACGATCGCCGCCCTAGAAATGGAAAAAGAGCGTCGCCTCC ACCACAACGACCACCTCAAGGCCCGCCTTCTAGGTATTACCAATCGTTCGGAAAGCACGATCACCCACATCGTTGACCAA GTGCTCTATACCCATGCCGGCATTGAAATCGGCGTTGCGGCCACCAAAACCTTTACGGCGCAACTGATGAGCTTTTATTT CCTGGCTCTGGAGTTGGCGGCCCGACGTCAAACCCTCGCCCCTGAAAAACTCCAGCACATTGTCACCGGATTACAGCAGA TTCCAACCCAAATTGAGTCGATCCTGGCGGATCAAGAAAAGAGCATCGAAGAATTGGCCCACAATTTCACTGATACCCAG GACTTTATCTTTATTGGTCGGGGGATTAATTTTCCCATTGCCCTAGAAGGCGCCCTCAAACTCAAGGAAATCAGCTACAT CCACGCCGAGGGTTATCCTGCCGGGGAGATGAAACATGGCCCCATTGCCCTCCTGGATGCGAAGGTGCCCGTGGTGGCGA TCGCCATGCCAGGGGACATTTACGAAAAAGTGATTTCCAATGCCCAGGAAGCGAAGGCACGGGATGCCCTTTTAATTGGT GTGACGGCCCTGGATGATACGGAAGCGACCCAAACCTTTGATGAAGTGTTACCAGTAGCGGCGGTGGACGAAATTTTGTC ACCCCTATTGGCGGTGATTCCTCTCCAGCTCCTTTCCTATCACATCGCCGCACGACGGGGCTTAGATGTGGATCAACCGC GCAACCTCGCCAAATCTGTCACGGTGGAATAA
Upstream 100 bases:
>100_bases TCCCAGAATCTGACCGCTTCTAGGGAACAAAAACAAAAATTCAAGGTTAAAGACTATAGGATAGTAACGGCTCATTTTTC GTGTAGGGAGACCTGATTTT
Downstream 100 bases:
>100_bases AGGAAAAAATAAAGGCGATCGCCCCATATCTTCAGTCCGGGGAGAGCAATCATGTTCTCCCCAATTTTTTGGGAACCAAT GCCTATTTATTAAACGGATC
Product: glucosamine--fructose-6-phosphate aminotransferase, isomerizing
Products: NA
Alternate protein names: D-fructose-6-phosphate amidotransferase; GFAT; Glucosamine-6-phosphate synthase; Hexosephosphate aminotransferase; L-glutamine-D-fructose-6-phosphate amidotransferase [H]
Number of amino acids: Translated: 623; Mature: 623
Protein sequence:
>623_residues MCGIVGYLGTQAATDILVSGLERLEYRGYDSAGIATIWQEKLHSVRAKGKLYRLREKLEGNSTPATIGIGHTRWATHGKP EEHNAHPHLDMAQRVAVVQNGIVENYRELREELQGKGYTFLSETDTEVIPHLIADLLQTTKSEPEPLLAAVQKAVQRLEG AFAIAIICVDYPDELIVARQQAPLTLGFGQGEFFCASDITALIPHTRAVLTLENGEMARMTPLGMEIYNFAGDRLKKAPR TLDWNPGQVEKQGFRHYMLKEIYEQPAVVRTNLEVYLNPEAAQPINLGINDPTFLDNIDHIQIVACGTSWHASLVGKYLL EQLAGIPTFVHYASEFRYSPSPIMPNTLTIGVTQSGETADTIAALEMEKERRLHHNDHLKARLLGITNRSESTITHIVDQ VLYTHAGIEIGVAATKTFTAQLMSFYFLALELAARRQTLAPEKLQHIVTGLQQIPTQIESILADQEKSIEELAHNFTDTQ DFIFIGRGINFPIALEGALKLKEISYIHAEGYPAGEMKHGPIALLDAKVPVVAIAMPGDIYEKVISNAQEAKARDALLIG VTALDDTEATQTFDEVLPVAAVDEILSPLLAVIPLQLLSYHIAARRGLDVDQPRNLAKSVTVE
Sequences:
>Translated_623_residues MCGIVGYLGTQAATDILVSGLERLEYRGYDSAGIATIWQEKLHSVRAKGKLYRLREKLEGNSTPATIGIGHTRWATHGKP EEHNAHPHLDMAQRVAVVQNGIVENYRELREELQGKGYTFLSETDTEVIPHLIADLLQTTKSEPEPLLAAVQKAVQRLEG AFAIAIICVDYPDELIVARQQAPLTLGFGQGEFFCASDITALIPHTRAVLTLENGEMARMTPLGMEIYNFAGDRLKKAPR TLDWNPGQVEKQGFRHYMLKEIYEQPAVVRTNLEVYLNPEAAQPINLGINDPTFLDNIDHIQIVACGTSWHASLVGKYLL EQLAGIPTFVHYASEFRYSPSPIMPNTLTIGVTQSGETADTIAALEMEKERRLHHNDHLKARLLGITNRSESTITHIVDQ VLYTHAGIEIGVAATKTFTAQLMSFYFLALELAARRQTLAPEKLQHIVTGLQQIPTQIESILADQEKSIEELAHNFTDTQ DFIFIGRGINFPIALEGALKLKEISYIHAEGYPAGEMKHGPIALLDAKVPVVAIAMPGDIYEKVISNAQEAKARDALLIG VTALDDTEATQTFDEVLPVAAVDEILSPLLAVIPLQLLSYHIAARRGLDVDQPRNLAKSVTVE >Mature_623_residues MCGIVGYLGTQAATDILVSGLERLEYRGYDSAGIATIWQEKLHSVRAKGKLYRLREKLEGNSTPATIGIGHTRWATHGKP EEHNAHPHLDMAQRVAVVQNGIVENYRELREELQGKGYTFLSETDTEVIPHLIADLLQTTKSEPEPLLAAVQKAVQRLEG AFAIAIICVDYPDELIVARQQAPLTLGFGQGEFFCASDITALIPHTRAVLTLENGEMARMTPLGMEIYNFAGDRLKKAPR TLDWNPGQVEKQGFRHYMLKEIYEQPAVVRTNLEVYLNPEAAQPINLGINDPTFLDNIDHIQIVACGTSWHASLVGKYLL EQLAGIPTFVHYASEFRYSPSPIMPNTLTIGVTQSGETADTIAALEMEKERRLHHNDHLKARLLGITNRSESTITHIVDQ VLYTHAGIEIGVAATKTFTAQLMSFYFLALELAARRQTLAPEKLQHIVTGLQQIPTQIESILADQEKSIEELAHNFTDTQ DFIFIGRGINFPIALEGALKLKEISYIHAEGYPAGEMKHGPIALLDAKVPVVAIAMPGDIYEKVISNAQEAKARDALLIG VTALDDTEATQTFDEVLPVAAVDEILSPLLAVIPLQLLSYHIAARRGLDVDQPRNLAKSVTVE
Specific function: Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source [H]
COG id: COG0449
COG function: function code M; Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 SIS domains [H]
Homologues:
Organism=Homo sapiens, GI4826742, Length=694, Percent_Identity=35.3025936599424, Blast_Score=401, Evalue=1e-112, Organism=Homo sapiens, GI205277386, Length=696, Percent_Identity=34.9137931034483, Blast_Score=389, Evalue=1e-108, Organism=Escherichia coli, GI1790167, Length=626, Percent_Identity=45.2076677316294, Blast_Score=507, Evalue=1e-145, Organism=Escherichia coli, GI87082251, Length=321, Percent_Identity=22.7414330218069, Blast_Score=73, Evalue=4e-14, Organism=Escherichia coli, GI1788651, Length=221, Percent_Identity=27.1493212669683, Blast_Score=70, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17532897, Length=440, Percent_Identity=35.4545454545455, Blast_Score=254, Evalue=1e-67, Organism=Caenorhabditis elegans, GI17532899, Length=440, Percent_Identity=35.4545454545455, Blast_Score=254, Evalue=1e-67, Organism=Caenorhabditis elegans, GI17539970, Length=441, Percent_Identity=34.2403628117914, Blast_Score=246, Evalue=4e-65, Organism=Saccharomyces cerevisiae, GI6322745, Length=440, Percent_Identity=35.2272727272727, Blast_Score=261, Evalue=2e-70, Organism=Saccharomyces cerevisiae, GI6323731, Length=444, Percent_Identity=28.3783783783784, Blast_Score=164, Evalue=5e-41, Organism=Saccharomyces cerevisiae, GI6323730, Length=204, Percent_Identity=35.2941176470588, Blast_Score=117, Evalue=4e-27, Organism=Drosophila melanogaster, GI21357745, Length=701, Percent_Identity=35.3780313837375, Blast_Score=379, Evalue=1e-105,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000583 - InterPro: IPR017932 - InterPro: IPR005855 - InterPro: IPR001347 [H]
Pfam domain/function: PF00310 GATase_2; PF01380 SIS [H]
EC number: =2.6.1.16 [H]
Molecular weight: Translated: 68785; Mature: 68785
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: PS00443 GATASE_TYPE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCGIVGYLGTQAATDILVSGLERLEYRGYDSAGIATIWQEKLHSVRAKGKLYRLREKLEG CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC NSTPATIGIGHTRWATHGKPEEHNAHPHLDMAQRVAVVQNGIVENYRELREELQGKGYTF CCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE LSETDTEVIPHLIADLLQTTKSEPEPLLAAVQKAVQRLEGAFAIAIICVDYPDELIVARQ ECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHEECC QAPLTLGFGQGEFFCASDITALIPHTRAVLTLENGEMARMTPLGMEIYNFAGDRLKKAPR CCCEEEECCCCCEEECCCHHHHCCCCEEEEEECCCCEEEECCCCHHHHHHHHHHHHHCCC TLDWNPGQVEKQGFRHYMLKEIYEQPAVVRTNLEVYLNPEAAQPINLGINDPTFLDNIDH CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECEEEEECCCCCCCEECCCCCCHHHCCCCE IQIVACGTSWHASLVGKYLLEQLAGIPTFVHYASEFRYSPSPIMPNTLTIGVTQSGETAD EEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHH TIAALEMEKERRLHHNDHLKARLLGITNRSESTITHIVDQVLYTHAGIEIGVAATKTFTA HHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHH QLMSFYFLALELAARRQTLAPEKLQHIVTGLQQIPTQIESILADQEKSIEELAHNFTDTQ HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC DFIFIGRGINFPIALEGALKLKEISYIHAEGYPAGEMKHGPIALLDAKVPVVAIAMPGDI CEEEEECCCCCCEEECCCEEEEHEEEEECCCCCCCCCCCCCEEEEECCCCEEEEECCHHH YEKVISNAQEAKARDALLIGVTALDDTEATQTFDEVLPVAAVDEILSPLLAVIPLQLLSY HHHHHCCHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HIAARRGLDVDQPRNLAKSVTVE HHHHHCCCCCCCCHHHHHHCCCC >Mature Secondary Structure MCGIVGYLGTQAATDILVSGLERLEYRGYDSAGIATIWQEKLHSVRAKGKLYRLREKLEG CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC NSTPATIGIGHTRWATHGKPEEHNAHPHLDMAQRVAVVQNGIVENYRELREELQGKGYTF CCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE LSETDTEVIPHLIADLLQTTKSEPEPLLAAVQKAVQRLEGAFAIAIICVDYPDELIVARQ ECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHEECC QAPLTLGFGQGEFFCASDITALIPHTRAVLTLENGEMARMTPLGMEIYNFAGDRLKKAPR CCCEEEECCCCCEEECCCHHHHCCCCEEEEEECCCCEEEECCCCHHHHHHHHHHHHHCCC TLDWNPGQVEKQGFRHYMLKEIYEQPAVVRTNLEVYLNPEAAQPINLGINDPTFLDNIDH CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECEEEEECCCCCCCEECCCCCCHHHCCCCE IQIVACGTSWHASLVGKYLLEQLAGIPTFVHYASEFRYSPSPIMPNTLTIGVTQSGETAD EEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHH TIAALEMEKERRLHHNDHLKARLLGITNRSESTITHIVDQVLYTHAGIEIGVAATKTFTA HHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHH QLMSFYFLALELAARRQTLAPEKLQHIVTGLQQIPTQIESILADQEKSIEELAHNFTDTQ HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC DFIFIGRGINFPIALEGALKLKEISYIHAEGYPAGEMKHGPIALLDAKVPVVAIAMPGDI CEEEEECCCCCCEEECCCEEEEHEEEEECCCCCCCCCCCCCEEEEECCCCEEEEECCHHH YEKVISNAQEAKARDALLIGVTALDDTEATQTFDEVLPVAAVDEILSPLLAVIPLQLLSY HHHHHCCHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HIAARRGLDVDQPRNLAKSVTVE HHHHHCCCCCCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]