| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170077758
Identifier: 170077758
GI number: 170077758
Start: 1172807
End: 1174120
Strand: Reverse
Name: 170077758
Synonym: SYNPCC7002_A1140
Alternate gene names: NA
Gene position: 1174120-1172807 (Counterclockwise)
Preceding gene: 170077759
Following gene: 170077757
Centisome position: 39.03
GC content: 36.68
Gene sequence:
>1314_bases GTGTCCAACTCATCTCTTTCATTCAGTGAAGTTTCTAAAGTAGATAAACTTGTCCTTTTTATTCAGAATCAGCTCAAAGG TTTTCAAGAAGTTAAAAGTGGGAAGAGAGATGATTGGGGGGAAGACTCAATTAAAATAGTTTTTCACAGAAAAAATTTTT CTGAGTTTCTATTGGGAAACGTAAACAAGATCATTCCAATAACTTTTGAAATGTGGCCTAGCCTATCATGCGATGCTAGA TGTCCGAAGTGTACATACAGAATTAATAAGGCAAGATACGAAGATGATAAAAATGCTTCGTTAACAACATTTGCCAATAC CTCGGATTACCTTCGATTGATTTCAATGCTTTCAGATGGGGGAGTAAGGTCTGTTACATTAACTGGAGGAGGAGAACCAC TTTTGAATCCCGACTTTGGAAAAATAATAAAGCATGTTAAAAAGTGCGGCATGAGTTGGGGAATGTTTACACATGGCTTG CATTTAAAAGGCGAAGTAGTTAATGAGATATTAGACAATCCACCACGATTTATTAGGGTCAGCCTGAATTCAAGCTCTCC TATTACTCATCATGCAGAGTATAGAATAGGTGAAGATGCGTATTTTCAAGTAATTAATAATGTCGTTAAGTTCGCTACCA AATCTAAGGAGATTCCATCATCTGTAGGTGTAGGATACGCTATCGATCCGGTGATCTCCGATAGTGAGTTATTGGAAATT GGGCAAGCTTTAGACGTTTTGTATAGTAGAACTAATGGCGGCTTAAAATATGCCAGTTTCCGGCCAAAAGTTGTTTATTA CAATAACGATACAACTCCAAAATACAACCAGTTTAGATATGAGCAGTTTGCCCTTTTACCTCAACGTGTAAAAGATATTG TAGTACCTTTCCTTACAAAAGGAAACGGAATTCGCATTGATCTAAAACATCACTTATTTCATAACATTTCTGAACGGAAA ATTTTCAATAGAGCTTTAGGTTTAAGCTGGGCTTCTCAAGTAGATCACCGAGGAGTAGGGTATTTGCTTAATGAGTTGAA CGGAAGTCCTTGGTCCCTAGCTTCGTATGGTAATTTTCTCAGTAAAAAAAGCTTCGAGAGTACTTGGTACTCTGAATCAA GGCTTATGTTAACTGAACAATATCAAAATGGCGACTTGTCATTACCTCTAAATATAAAAACGTCTCACGTTGAACATTTA CTCAACCAAATACTCGATCAGTTTGGACTGTTTTCCACAGCAGAAGTTGAGGAGTTTTGGAAAAAAATCAATTTGGATAG TTATTACAAGCCAAGCAATTGGGATTTTCTTTGA
Upstream 100 bases:
>100_bases TCTTCAAGTAATTGAATTTGATTGCTTGATGGTCAAAGCTGACACTAAGATTTCATGAATCGTAATTGTACAATTGGTAC AATTGGGAGGAATATTTATC
Downstream 100 bases:
>100_bases CTCATTTTTTTGTGTTCTTATTGTCTGTTATGCAAGATCAGTTTCCTATGAAAAAAATAGCTTTTGTAGTTGCACCATAT GGTTTTGGCCCTACAGCTAA
Product: radical SAM domain-containing protein
Products: NA
Alternate protein names: Radical SAM Domain Protein; Radical SAM Domain-Containing Protein; Radical SAM Family Protein
Number of amino acids: Translated: 437; Mature: 436
Protein sequence:
>437_residues MSNSSLSFSEVSKVDKLVLFIQNQLKGFQEVKSGKRDDWGEDSIKIVFHRKNFSEFLLGNVNKIIPITFEMWPSLSCDAR CPKCTYRINKARYEDDKNASLTTFANTSDYLRLISMLSDGGVRSVTLTGGGEPLLNPDFGKIIKHVKKCGMSWGMFTHGL HLKGEVVNEILDNPPRFIRVSLNSSSPITHHAEYRIGEDAYFQVINNVVKFATKSKEIPSSVGVGYAIDPVISDSELLEI GQALDVLYSRTNGGLKYASFRPKVVYYNNDTTPKYNQFRYEQFALLPQRVKDIVVPFLTKGNGIRIDLKHHLFHNISERK IFNRALGLSWASQVDHRGVGYLLNELNGSPWSLASYGNFLSKKSFESTWYSESRLMLTEQYQNGDLSLPLNIKTSHVEHL LNQILDQFGLFSTAEVEEFWKKINLDSYYKPSNWDFL
Sequences:
>Translated_437_residues MSNSSLSFSEVSKVDKLVLFIQNQLKGFQEVKSGKRDDWGEDSIKIVFHRKNFSEFLLGNVNKIIPITFEMWPSLSCDAR CPKCTYRINKARYEDDKNASLTTFANTSDYLRLISMLSDGGVRSVTLTGGGEPLLNPDFGKIIKHVKKCGMSWGMFTHGL HLKGEVVNEILDNPPRFIRVSLNSSSPITHHAEYRIGEDAYFQVINNVVKFATKSKEIPSSVGVGYAIDPVISDSELLEI GQALDVLYSRTNGGLKYASFRPKVVYYNNDTTPKYNQFRYEQFALLPQRVKDIVVPFLTKGNGIRIDLKHHLFHNISERK IFNRALGLSWASQVDHRGVGYLLNELNGSPWSLASYGNFLSKKSFESTWYSESRLMLTEQYQNGDLSLPLNIKTSHVEHL LNQILDQFGLFSTAEVEEFWKKINLDSYYKPSNWDFL >Mature_436_residues SNSSLSFSEVSKVDKLVLFIQNQLKGFQEVKSGKRDDWGEDSIKIVFHRKNFSEFLLGNVNKIIPITFEMWPSLSCDARC PKCTYRINKARYEDDKNASLTTFANTSDYLRLISMLSDGGVRSVTLTGGGEPLLNPDFGKIIKHVKKCGMSWGMFTHGLH LKGEVVNEILDNPPRFIRVSLNSSSPITHHAEYRIGEDAYFQVINNVVKFATKSKEIPSSVGVGYAIDPVISDSELLEIG QALDVLYSRTNGGLKYASFRPKVVYYNNDTTPKYNQFRYEQFALLPQRVKDIVVPFLTKGNGIRIDLKHHLFHNISERKI FNRALGLSWASQVDHRGVGYLLNELNGSPWSLASYGNFLSKKSFESTWYSESRLMLTEQYQNGDLSLPLNIKTSHVEHLL NQILDQFGLFSTAEVEEFWKKINLDSYYKPSNWDFL
Specific function: Unknown
COG id: COG0535
COG function: function code R; Predicted Fe-S oxidoreductases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49819; Mature: 49688
Theoretical pI: Translated: 8.72; Mature: 8.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNSSLSFSEVSKVDKLVLFIQNQLKGFQEVKSGKRDDWGEDSIKIVFHRKNFSEFLLGN CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHCC VNKIIPITFEMWPSLSCDARCPKCTYRINKARYEDDKNASLTTFANTSDYLRLISMLSDG CCCEEEEEEECCCCCCCCCCCCHHHEEECHHHCCCCCCCEEEEECCCHHHHHHHHHHCCC GVRSVTLTGGGEPLLNPDFGKIIKHVKKCGMSWGMFTHGLHLKGEVVNEILDNPPRFIRV CEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHHCCCCEEEEE SLNSSSPITHHAEYRIGEDAYFQVINNVVKFATKSKEIPSSVGVGYAIDPVISDSELLEI EECCCCCCCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCHHCCCCEEECCCCCCHHHHHH GQALDVLYSRTNGGLKYASFRPKVVYYNNDTTPKYNQFRYEQFALLPQRVKDIVVPFLTK HHHHHHHHHCCCCCEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEC GNGIRIDLKHHLFHNISERKIFNRALGLSWASQVDHRGVGYLLNELNGSPWSLASYGNFL CCCEEEEEHHHHHHCHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHCCCCCEEHHHHHHHH SKKSFESTWYSESRLMLTEQYQNGDLSLPLNIKTSHVEHLLNQILDQFGLFSTAEVEEFW HHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHH KKINLDSYYKPSNWDFL HHCCCCCCCCCCCCCCC >Mature Secondary Structure SNSSLSFSEVSKVDKLVLFIQNQLKGFQEVKSGKRDDWGEDSIKIVFHRKNFSEFLLGN CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHCC VNKIIPITFEMWPSLSCDARCPKCTYRINKARYEDDKNASLTTFANTSDYLRLISMLSDG CCCEEEEEEECCCCCCCCCCCCHHHEEECHHHCCCCCCCEEEEECCCHHHHHHHHHHCCC GVRSVTLTGGGEPLLNPDFGKIIKHVKKCGMSWGMFTHGLHLKGEVVNEILDNPPRFIRV CEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHHCCCCEEEEE SLNSSSPITHHAEYRIGEDAYFQVINNVVKFATKSKEIPSSVGVGYAIDPVISDSELLEI EECCCCCCCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCHHCCCCEEECCCCCCHHHHHH GQALDVLYSRTNGGLKYASFRPKVVYYNNDTTPKYNQFRYEQFALLPQRVKDIVVPFLTK HHHHHHHHHCCCCCEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEC GNGIRIDLKHHLFHNISERKIFNRALGLSWASQVDHRGVGYLLNELNGSPWSLASYGNFL CCCEEEEEHHHHHHCHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHCCCCCEEHHHHHHHH SKKSFESTWYSESRLMLTEQYQNGDLSLPLNIKTSHVEHLLNQILDQFGLFSTAEVEEFW HHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHH KKINLDSYYKPSNWDFL HHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA