| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170077755
Identifier: 170077755
GI number: 170077755
Start: 1169466
End: 1170611
Strand: Reverse
Name: 170077755
Synonym: SYNPCC7002_A1137
Alternate gene names: NA
Gene position: 1170611-1169466 (Counterclockwise)
Preceding gene: 170077756
Following gene: 170077754
Centisome position: 38.92
GC content: 32.46
Gene sequence:
>1146_bases ATGAAAATATTTTTCCTGGATTTAATCAAAGTTGTAGATAAGAGCTTTCACTCTTTCTTTAAGAATGCTCTATCTATGAT TTATGCTCCGACTAAAATTTTAGACTACAAAAACTGTAGTGATTATATTCAAACATTCTCTGTGAACCTTGATAAAAATG AATATTTAGTTGTAAGTATTAATGGTGGTCGAGTGTTTACAGATCGTCTTACAAATATTACTTTTATTTCACGAAAATAC TTGTGTCCCTGTGTATCATGGCAATATTTGGGTACTTATTTGTCAAGTAACGGTTTAGAGAGAAAAATTTTATCAGATCA TGAGAACTTCGTTCTCAACAGAAAGATTTTAATTGATTGCTTCCCAACAAAAATAAATAGTACTGTTATTAGTCTACTTA CAGGTGGAGCTGCCAACAATAATTATTTTCATTGGCTTTTTGACACTCTACCTAGAATATACATGGTAAAAGTAGCTATT GATAAACTAGATGATCATGTGAAATATTTGATCCCAGAAGACACTCAGCCTTTTCAGCGAGAATCACTCGAAGCAATTGG TATACCTTCGAGTTTACGAATTACAAGTAAGGTACATAGGCATGTTTGTGCAATTAAGATTATTGCTACAACTCATCCTC ATCCTAATATTGATGAGGTTCAGTCTTGGGTTGTGAAGTTTCTTAGGAAGTCTTTTCTCAAATTGTCAGCAAATAGTCAG AAAGTAGATTTGATATATATCAGTCGAACTGATAGTCTTCATGTGCGAAAACTTCTAAATGAAGATTATTTCTTTAAACT TCTTAAGCCTATTGGTTTCCAAATTTATAGATTATCTAAGTTAACATTTTCCGAACAAGTTTCTTTGTTTTCTAACGCTA AAATGATAGTTGGAGTTCATGGGGCGGGTCTAGCAAATTTAGTGTTTTCACCAAGTCAGACAGTGGTTTATGAGCTTTTT TCAACGTGTTATCAACCATCAATGTATGAGAGGTTATCTGAACTTGTAGGACTCGACTACCGAAAGATTGTCTGCCAAGC AAATGAAAACTATGGGAGTGAACAAAAAACTAGTTTTTACATAGCAGAAAATGATATATATGCTATTGTTAAATCTGCCC AAAAAATTATAGGAAAGCAAAAATAA
Upstream 100 bases:
>100_bases CATAGAGAAAAAAAGGTATGGTGGCAAGGTTCACCATCTCTCCATGAATGGGCAGAACGCTATACGTCAATAAAACTACC CAATATATAGGCAATCATAG
Downstream 100 bases:
>100_bases TCAAAATGTTTACGTTAATGCCTCGTTATATTGAGATAGAGACATCTCGCTACTGTAATCGTTCATGTTTATGGTGTCCT AATTCCGTAATACGTGATCG
Product: hypothetical protein
Products: NA
Alternate protein names: Capsular Polysaccharide Biosynthesis Protein- Like Protein; TPR Repeat-Containing Protein; Capsular Polysaccharide Biosynthesis Protein-Like; Capsular Polysaccharide Biosynthesis Protein
Number of amino acids: Translated: 381; Mature: 381
Protein sequence:
>381_residues MKIFFLDLIKVVDKSFHSFFKNALSMIYAPTKILDYKNCSDYIQTFSVNLDKNEYLVVSINGGRVFTDRLTNITFISRKY LCPCVSWQYLGTYLSSNGLERKILSDHENFVLNRKILIDCFPTKINSTVISLLTGGAANNNYFHWLFDTLPRIYMVKVAI DKLDDHVKYLIPEDTQPFQRESLEAIGIPSSLRITSKVHRHVCAIKIIATTHPHPNIDEVQSWVVKFLRKSFLKLSANSQ KVDLIYISRTDSLHVRKLLNEDYFFKLLKPIGFQIYRLSKLTFSEQVSLFSNAKMIVGVHGAGLANLVFSPSQTVVYELF STCYQPSMYERLSELVGLDYRKIVCQANENYGSEQKTSFYIAENDIYAIVKSAQKIIGKQK
Sequences:
>Translated_381_residues MKIFFLDLIKVVDKSFHSFFKNALSMIYAPTKILDYKNCSDYIQTFSVNLDKNEYLVVSINGGRVFTDRLTNITFISRKY LCPCVSWQYLGTYLSSNGLERKILSDHENFVLNRKILIDCFPTKINSTVISLLTGGAANNNYFHWLFDTLPRIYMVKVAI DKLDDHVKYLIPEDTQPFQRESLEAIGIPSSLRITSKVHRHVCAIKIIATTHPHPNIDEVQSWVVKFLRKSFLKLSANSQ KVDLIYISRTDSLHVRKLLNEDYFFKLLKPIGFQIYRLSKLTFSEQVSLFSNAKMIVGVHGAGLANLVFSPSQTVVYELF STCYQPSMYERLSELVGLDYRKIVCQANENYGSEQKTSFYIAENDIYAIVKSAQKIIGKQK >Mature_381_residues MKIFFLDLIKVVDKSFHSFFKNALSMIYAPTKILDYKNCSDYIQTFSVNLDKNEYLVVSINGGRVFTDRLTNITFISRKY LCPCVSWQYLGTYLSSNGLERKILSDHENFVLNRKILIDCFPTKINSTVISLLTGGAANNNYFHWLFDTLPRIYMVKVAI DKLDDHVKYLIPEDTQPFQRESLEAIGIPSSLRITSKVHRHVCAIKIIATTHPHPNIDEVQSWVVKFLRKSFLKLSANSQ KVDLIYISRTDSLHVRKLLNEDYFFKLLKPIGFQIYRLSKLTFSEQVSLFSNAKMIVGVHGAGLANLVFSPSQTVVYELF STCYQPSMYERLSELVGLDYRKIVCQANENYGSEQKTSFYIAENDIYAIVKSAQKIIGKQK
Specific function: Unknown
COG id: COG4421
COG function: function code G; Capsular polysaccharide biosynthesis protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Drosophila melanogaster, GI19920574, Length=108, Percent_Identity=35.1851851851852, Blast_Score=68, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43824; Mature: 43824
Theoretical pI: Translated: 9.44; Mature: 9.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIFFLDLIKVVDKSFHSFFKNALSMIYAPTKILDYKNCSDYIQTFSVNLDKNEYLVVSI CEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHEEEEEECCCCEEEEEE NGGRVFTDRLTNITFISRKYLCPCVSWQYLGTYLSSNGLERKILSDHENFVLNRKILIDC CCCEEEEHHHCCEEEEHHHHCCCCCCHHHHHHHHHCCCCCHHHHCCCCCEEEEEEEEEEE FPTKINSTVISLLTGGAANNNYFHWLFDTLPRIYMVKVAIDKLDDHVKYLIPEDTQPFQR CCCHHHHHHHHHHCCCCCCCCEEEEHHHHCCHHEEHHHHHHHHCCCCEEECCCCCCCHHH ESLEAIGIPSSLRITSKVHRHVCAIKIIATTHPHPNIDEVQSWVVKFLRKSFLKLSANSQ HCHHHCCCCCCHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCC KVDLIYISRTDSLHVRKLLNEDYFFKLLKPIGFQIYRLSKLTFSEQVSLFSNAKMIVGVH EEEEEEEECCCCHHHHHHHCCHHHHHHHHHHCCEEEEEEHHHHHHHHHHHCCCEEEEEEC GAGLANLVFSPSQTVVYELFSTCYQPSMYERLSELVGLDYRKIVCQANENYGSEQKTSFY CCCHHHEEECCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEE IAENDIYAIVKSAQKIIGKQK EECCHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKIFFLDLIKVVDKSFHSFFKNALSMIYAPTKILDYKNCSDYIQTFSVNLDKNEYLVVSI CEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHEEEEEECCCCEEEEEE NGGRVFTDRLTNITFISRKYLCPCVSWQYLGTYLSSNGLERKILSDHENFVLNRKILIDC CCCEEEEHHHCCEEEEHHHHCCCCCCHHHHHHHHHCCCCCHHHHCCCCCEEEEEEEEEEE FPTKINSTVISLLTGGAANNNYFHWLFDTLPRIYMVKVAIDKLDDHVKYLIPEDTQPFQR CCCHHHHHHHHHHCCCCCCCCEEEEHHHHCCHHEEHHHHHHHHCCCCEEECCCCCCCHHH ESLEAIGIPSSLRITSKVHRHVCAIKIIATTHPHPNIDEVQSWVVKFLRKSFLKLSANSQ HCHHHCCCCCCHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCC KVDLIYISRTDSLHVRKLLNEDYFFKLLKPIGFQIYRLSKLTFSEQVSLFSNAKMIVGVH EEEEEEEECCCCHHHHHHHCCHHHHHHHHHHCCEEEEEEHHHHHHHHHHHCCCEEEEEEC GAGLANLVFSPSQTVVYELFSTCYQPSMYERLSELVGLDYRKIVCQANENYGSEQKTSFY CCCHHHEEECCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEE IAENDIYAIVKSAQKIIGKQK EECCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA