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The map label for this gene is nusA [H]

Identifier: 170077376

GI number: 170077376

Start: 781519

End: 782781

Strand: Direct

Name: nusA [H]

Synonym: SYNPCC7002_A0753

Alternate gene names: 170077376

Gene position: 781519-782781 (Clockwise)

Preceding gene: 170077375

Following gene: 170077377

Centisome position: 25.98

GC content: 52.81

Gene sequence:

>1263_bases
ATGTCCCTTGTTAGTCTCACTGGTTTAAGCGCCCTCGTTGAAGAAATCAGCGATCGCCACAATTTACCCCAAAGTGCTGT
CCATGAAGCCCTCCGGGAAGCCCTGCTCAAAGGTTATGAGCGCTATCGCCGTTCCCTAACGCTCAACCAAGCTACCCCCT
TCGCTGAAGACTACTTCGATAACTTTGAAGTCGAACTAGACCTCGAAGACGAAGGCTTTCGGGTATTGGCCACCAAGGTG
ATTGTCGAAGAAGTGGAAAACTCCGATCATCAAATTGCCCTACAAGAAGTCCAAGAAGTCGCCAATGAAGCCCAACTCGG
TGATTCCGTAATCCTAGACGTCACCCCCGAACAGAGTGATTTTGGGCGGATGGCCGCGATTCAAACCAAGCAAGTGCTGC
TTCAGAAATTACGGGATCAGCAACGCAAACTCGTCCAAGAAGAATTCCAAGAACTAGAAGGGGAAGTCCTCCAGGCCCGT
GTCCTCCGTTTTGAGCGGAACTTTGTGGTGATGGCGGTTACCAGCGCCTTTGGACAACCAGAAACCGAAGCCGAATTACC
CAGACGGGAGCAGCTCCCCAACGACAATTACCGAGCTAATACCACCTACAAAGTCTATTTAAAACACGTTAAAGAAGGCT
CCCACCGTGGCCCCCAGTTAGTCGTTTCCCGCGCCGCCGCAGATTTAGTCGTTTACCTGTTTGCCAACGAAGTCCCAGAA
ATCGAAGAAGAAATCGTGCGGATTGTGGCCGTTGCCCGAGAAGCGAATCCCCCCGGCCGTTATGTTGGCCCCCGCACAAA
AATTGCCGTGGATACCCTAGAGCGGGATGTGGATCCTGTCGGTGCTTGTATTGGGGCGCGGGGATCACGGATCCAAGCCG
TAGTTAATGAATTGCGGGGCGAAAAAATTGATGTGATCCGTTGGTCGCCAGATCCAGCGACCTACATTGCCAATGCCCTG
AGCCCAGCACGGGTCGATGGGGTAATCTTGGTTGATGCGGAAGAGCGACAGGCCACGGTATTAGTCCCCGAAAACCAACT
GAGCCTTGCCATTGGTAAAGAAGGGCAAAATGTACGTTTGGCCGCACGCTTGACGGGCTGGAAAATTGATATTAAAGATA
GTGCCAAGTACGAGGCAGAACAAGCCGCCCTCGCCGAACAAGAGACAGCCCCACCCAGTGAAGTGGAGTCGGAAACTGCT
GTGCTGCCGGATCAAGCTGAAACGGAACCTTTAGAAGAAGAGGCCACGCCAACGGACGCTTAG

Upstream 100 bases:

>100_bases
GGGAACTGGTCGCCAAAGTACAACTAGATGACCAACCCTAGTTGCCCCAAACTGCCCCAAGCTTTGTTCATTTATCGATT
TTTTCTATCCGTAAATTTCT

Downstream 100 bases:

>100_bases
ATTCCGGGGGGAATTTTGATGTAAAAGGCGATCGCCATTTCAACCATTGCCATGGAGCCAAATCTACGCCGCTGTGTTGC
CTGCCGCAAACTTGCCCCAA

Product: transcription elongation factor NusA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 419

Protein sequence:

>420_residues
MSLVSLTGLSALVEEISDRHNLPQSAVHEALREALLKGYERYRRSLTLNQATPFAEDYFDNFEVELDLEDEGFRVLATKV
IVEEVENSDHQIALQEVQEVANEAQLGDSVILDVTPEQSDFGRMAAIQTKQVLLQKLRDQQRKLVQEEFQELEGEVLQAR
VLRFERNFVVMAVTSAFGQPETEAELPRREQLPNDNYRANTTYKVYLKHVKEGSHRGPQLVVSRAAADLVVYLFANEVPE
IEEEIVRIVAVAREANPPGRYVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWSPDPATYIANAL
SPARVDGVILVDAEERQATVLVPENQLSLAIGKEGQNVRLAARLTGWKIDIKDSAKYEAEQAALAEQETAPPSEVESETA
VLPDQAETEPLEEEATPTDA

Sequences:

>Translated_420_residues
MSLVSLTGLSALVEEISDRHNLPQSAVHEALREALLKGYERYRRSLTLNQATPFAEDYFDNFEVELDLEDEGFRVLATKV
IVEEVENSDHQIALQEVQEVANEAQLGDSVILDVTPEQSDFGRMAAIQTKQVLLQKLRDQQRKLVQEEFQELEGEVLQAR
VLRFERNFVVMAVTSAFGQPETEAELPRREQLPNDNYRANTTYKVYLKHVKEGSHRGPQLVVSRAAADLVVYLFANEVPE
IEEEIVRIVAVAREANPPGRYVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWSPDPATYIANAL
SPARVDGVILVDAEERQATVLVPENQLSLAIGKEGQNVRLAARLTGWKIDIKDSAKYEAEQAALAEQETAPPSEVESETA
VLPDQAETEPLEEEATPTDA
>Mature_419_residues
SLVSLTGLSALVEEISDRHNLPQSAVHEALREALLKGYERYRRSLTLNQATPFAEDYFDNFEVELDLEDEGFRVLATKVI
VEEVENSDHQIALQEVQEVANEAQLGDSVILDVTPEQSDFGRMAAIQTKQVLLQKLRDQQRKLVQEEFQELEGEVLQARV
LRFERNFVVMAVTSAFGQPETEAELPRREQLPNDNYRANTTYKVYLKHVKEGSHRGPQLVVSRAAADLVVYLFANEVPEI
EEEIVRIVAVAREANPPGRYVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWSPDPATYIANALS
PARVDGVILVDAEERQATVLVPENQLSLAIGKEGQNVRLAARLTGWKIDIKDSAKYEAEQAALAEQETAPPSEVESETAV
LPDQAETEPLEEEATPTDA

Specific function: Participates in both the termination and antitermination of transcription. Interacts with RNA polymerase and binds RNA [H]

COG id: COG0195

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI1789560, Length=378, Percent_Identity=33.5978835978836, Blast_Score=197, Evalue=1e-51,

Paralogues:

None

Copy number: 340 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1612 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 1,800 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004087
- InterPro:   IPR015946
- InterPro:   IPR009019
- InterPro:   IPR004088
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR022967
- InterPro:   IPR013735
- InterPro:   IPR010213 [H]

Pfam domain/function: PF08529 NusA_N; PF00575 S1 [H]

EC number: NA

Molecular weight: Translated: 46741; Mature: 46610

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLVSLTGLSALVEEISDRHNLPQSAVHEALREALLKGYERYRRSLTLNQATPFAEDYFD
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHCC
NFEVELDLEDEGFRVLATKVIVEEVENSDHQIALQEVQEVANEAQLGDSVILDVTPEQSD
CCEEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
FGRMAAIQTKQVLLQKLRDQQRKLVQEEFQELEGEVLQARVLRFERNFVVMAVTSAFGQP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHCCCC
ETEAELPRREQLPNDNYRANTTYKVYLKHVKEGSHRGPQLVVSRAAADLVVYLFANEVPE
CCHHCCCHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCH
IEEEIVRIVAVAREANPPGRYVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRG
HHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHCCCHHHHHHCCCCHHHHHHHHHHCC
EKIDVIRWSPDPATYIANALSPARVDGVILVDAEERQATVLVPENQLSLAIGKEGQNVRL
CEEEEEEECCCHHHHHHHCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEECCCCCCEEE
AARLTGWKIDIKDSAKYEAEQAALAEQETAPPSEVESETAVLPDQAETEPLEEEATPTDA
EEEEECEEEEECCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SLVSLTGLSALVEEISDRHNLPQSAVHEALREALLKGYERYRRSLTLNQATPFAEDYFD
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHCC
NFEVELDLEDEGFRVLATKVIVEEVENSDHQIALQEVQEVANEAQLGDSVILDVTPEQSD
CCEEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
FGRMAAIQTKQVLLQKLRDQQRKLVQEEFQELEGEVLQARVLRFERNFVVMAVTSAFGQP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHCCCC
ETEAELPRREQLPNDNYRANTTYKVYLKHVKEGSHRGPQLVVSRAAADLVVYLFANEVPE
CCHHCCCHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCH
IEEEIVRIVAVAREANPPGRYVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRG
HHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHCCCHHHHHHCCCCHHHHHHHHHHCC
EKIDVIRWSPDPATYIANALSPARVDGVILVDAEERQATVLVPENQLSLAIGKEGQNVRL
CEEEEEEECCCHHHHHHHCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEECCCCCCEEE
AARLTGWKIDIKDSAKYEAEQAALAEQETAPPSEVESETAVLPDQAETEPLEEEATPTDA
EEEEECEEEEECCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]