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The map label for this gene is ygcF [H]

Identifier: 170076908

GI number: 170076908

Start: 294872

End: 295528

Strand: Direct

Name: ygcF [H]

Synonym: SYNPCC7002_A0280

Alternate gene names: 170076908

Gene position: 294872-295528 (Clockwise)

Preceding gene: 170076903

Following gene: 170076909

Centisome position: 9.8

GC content: 50.38

Gene sequence:

>657_bases
ATGGCCCTTCGTACCGTACCGCGACCCTTGCTTGACTCCGCTGATTTTTTAGATATTGCCTCCTTCACCTACCCCATTGT
AGAAACGTTCCATTCCATCCAGGGGGAAGGCTTTTGGTGCGGCACCGCAGCTTTTTTTATTCGCCTCGCCGGTTGTGATG
TGGGTTGCCCCTGGTGCGACACCAAAATTTCCTGGAATCCGAAACGTCATCCCCAAGTTTCCGTTGGTCAATTAAAAGAG
CAAGTACAAACTGCCCAGCCGAAGATCATTGTCATTACGGGGGGGGAACCTTTGATGCACGACCTCTATCCTTTGACGAC
GGGTTTAAAAGAAACGGGGATTCCCCTCCACCTAGAAACCTCCGGTGCCCATCCCCTCAACGGTCACTTTGATTGGCTGA
CCCTTTCGCCAAAACCCTTTAAAGCGCCATTGCCGGAAATTTACGATCATGTCAGTGAATTAAAAGTCGTGATCGATCAA
GCCACCGATTTCCAGTGGGCGGAATCCCAAGTCCAAAAAATTGCCGCAAATATTCCCAAATATCTCCAACCCCAATGGGA
AAATCCCGCCAGCCAGAGTCTCATTTTCGACTATATCCTGGCCCATCCTGAATGGCGTCTCGGTCTGCAAACCCATAAGT
TTTTGGGGGTGCGCTAG

Upstream 100 bases:

>100_bases
ATCGCATCTCCTAGGGGATCTCTGGATTTTGCCCCGGAGACAGGCGATCGCCTTTTAGAATACAGTAGTAACCCTGTGTT
ATTTTTTGTTGCCCAAGGCC

Downstream 100 bases:

>100_bases
ATGAAACGGGCTGTTGTTTTACTCTCCGGTGGCTTGGATTCGGCTACCAGTGCCGCCCAGGCGATCGCCGATGGCTATGA
AGTGTTTGCCCTTTCCTTTC

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MALRTVPRPLLDSADFLDIASFTYPIVETFHSIQGEGFWCGTAAFFIRLAGCDVGCPWCDTKISWNPKRHPQVSVGQLKE
QVQTAQPKIIVITGGEPLMHDLYPLTTGLKETGIPLHLETSGAHPLNGHFDWLTLSPKPFKAPLPEIYDHVSELKVVIDQ
ATDFQWAESQVQKIAANIPKYLQPQWENPASQSLIFDYILAHPEWRLGLQTHKFLGVR

Sequences:

>Translated_218_residues
MALRTVPRPLLDSADFLDIASFTYPIVETFHSIQGEGFWCGTAAFFIRLAGCDVGCPWCDTKISWNPKRHPQVSVGQLKE
QVQTAQPKIIVITGGEPLMHDLYPLTTGLKETGIPLHLETSGAHPLNGHFDWLTLSPKPFKAPLPEIYDHVSELKVVIDQ
ATDFQWAESQVQKIAANIPKYLQPQWENPASQSLIFDYILAHPEWRLGLQTHKFLGVR
>Mature_217_residues
ALRTVPRPLLDSADFLDIASFTYPIVETFHSIQGEGFWCGTAAFFIRLAGCDVGCPWCDTKISWNPKRHPQVSVGQLKEQ
VQTAQPKIIVITGGEPLMHDLYPLTTGLKETGIPLHLETSGAHPLNGHFDWLTLSPKPFKAPLPEIYDHVSELKVVIDQA
TDFQWAESQVQKIAANIPKYLQPQWENPASQSLIFDYILAHPEWRLGLQTHKFLGVR

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=221, Percent_Identity=33.4841628959276, Blast_Score=119, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 24522; Mature: 24391

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALRTVPRPLLDSADFLDIASFTYPIVETFHSIQGEGFWCGTAAFFIRLAGCDVGCPWCD
CCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCC
TKISWNPKRHPQVSVGQLKEQVQTAQPKIIVITGGEPLMHDLYPLTTGLKETGIPLHLET
CCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCHHHCCCEEEEEC
SGAHPLNGHFDWLTLSPKPFKAPLPEIYDHVSELKVVIDQATDFQWAESQVQKIAANIPK
CCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHH
YLQPQWENPASQSLIFDYILAHPEWRLGLQTHKFLGVR
HCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHCCCC
>Mature Secondary Structure 
ALRTVPRPLLDSADFLDIASFTYPIVETFHSIQGEGFWCGTAAFFIRLAGCDVGCPWCD
CCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCC
TKISWNPKRHPQVSVGQLKEQVQTAQPKIIVITGGEPLMHDLYPLTTGLKETGIPLHLET
CCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCHHHCCCEEEEEC
SGAHPLNGHFDWLTLSPKPFKAPLPEIYDHVSELKVVIDQATDFQWAESQVQKIAANIPK
CCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHH
YLQPQWENPASQSLIFDYILAHPEWRLGLQTHKFLGVR
HCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]