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The map label for this gene is sodB [H]

Identifier: 170076871

GI number: 170076871

Start: 252228

End: 252827

Strand: Direct

Name: sodB [H]

Synonym: SYNPCC7002_A0242

Alternate gene names: 170076871

Gene position: 252228-252827 (Clockwise)

Preceding gene: 170076870

Following gene: 170076874

Centisome position: 8.39

GC content: 53.17

Gene sequence:

>600_bases
ATGGGATACGAACTACCTTCATTACCCTACGATTACACTGCCCTCGAACCCCACATCTCGAAGAGCACCTTAGAATTTCA
CCACGATAAGCACCATGCGAGCTACGTCTCCAAGTACAACGATGCCGTAGCTGGCACCGACATGGATAGCAAAAGTATCG
AAGACGTAATCAAAGCCGTAGCTGCAGATCCCGCCAAAGCAGGTTTGTTTAATAACGCTGCCCAAGCGTGGAACCACAGC
TTCTACTGGAACTGCATGAAGCCCGGTGGCGGTGGTCAACCCACTGGTGCCCTCGCCGACAAAATCAACGCCGACTTCGG
TAGTTTTGATAAATTCGTTGAGGCTTTCAAAACCGCTGGTGGCACCCAGTTTGGTAGTGGTTGGGCTTGGCTCGTCCTCG
ACAATGGCACCCTCAAGGTCACTAAAACCGGCAATGCTGGCAACCCCATGACCGAAGGCCAAACTCCCCTCCTCACCATG
GACGTTTGGGAACACGCCTACTACCTCGACTACCAAAACCGTCGCCCCGACTACATCAACACCTTCCTCACCAGTCTTGT
GAATTGGGATTTCGTGGCGGCTAACCTCGCAGCGGCCTAA

Upstream 100 bases:

>100_bases
TCTCGATCAGTACGTTCTACGAACAACTCTCACTTCAGAATCTTCCTGAGATAGGAAATCTCTGAAGCATCCTGCAAACT
CCAACGAGGAAAACACCACC

Downstream 100 bases:

>100_bases
CGTCTTGTTTGAATCCTAAGATTCATTTGGTTTTTCAAAATATCTAACTTAACTGACAAGGGACTTACCATGGGTAGGTC
TCTTTTTTTTTGGTGATGGG

Product: Mn-superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MGYELPSLPYDYTALEPHISKSTLEFHHDKHHASYVSKYNDAVAGTDMDSKSIEDVIKAVAADPAKAGLFNNAAQAWNHS
FYWNCMKPGGGGQPTGALADKINADFGSFDKFVEAFKTAGGTQFGSGWAWLVLDNGTLKVTKTGNAGNPMTEGQTPLLTM
DVWEHAYYLDYQNRRPDYINTFLTSLVNWDFVAANLAAA

Sequences:

>Translated_199_residues
MGYELPSLPYDYTALEPHISKSTLEFHHDKHHASYVSKYNDAVAGTDMDSKSIEDVIKAVAADPAKAGLFNNAAQAWNHS
FYWNCMKPGGGGQPTGALADKINADFGSFDKFVEAFKTAGGTQFGSGWAWLVLDNGTLKVTKTGNAGNPMTEGQTPLLTM
DVWEHAYYLDYQNRRPDYINTFLTSLVNWDFVAANLAAA
>Mature_198_residues
GYELPSLPYDYTALEPHISKSTLEFHHDKHHASYVSKYNDAVAGTDMDSKSIEDVIKAVAADPAKAGLFNNAAQAWNHSF
YWNCMKPGGGGQPTGALADKINADFGSFDKFVEAFKTAGGTQFGSGWAWLVLDNGTLKVTKTGNAGNPMTEGQTPLLTMD
VWEHAYYLDYQNRRPDYINTFLTSLVNWDFVAANLAAA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=208, Percent_Identity=41.8269230769231, Blast_Score=154, Evalue=4e-38,
Organism=Homo sapiens, GI67782305, Length=208, Percent_Identity=41.8269230769231, Blast_Score=154, Evalue=4e-38,
Organism=Homo sapiens, GI67782309, Length=201, Percent_Identity=35.8208955223881, Blast_Score=114, Evalue=6e-26,
Organism=Escherichia coli, GI1787946, Length=199, Percent_Identity=53.2663316582915, Blast_Score=226, Evalue=1e-60,
Organism=Escherichia coli, GI1790342, Length=207, Percent_Identity=46.8599033816425, Blast_Score=170, Evalue=6e-44,
Organism=Caenorhabditis elegans, GI17506561, Length=201, Percent_Identity=39.3034825870647, Blast_Score=132, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI17569479, Length=199, Percent_Identity=37.6884422110553, Blast_Score=129, Evalue=9e-31,
Organism=Saccharomyces cerevisiae, GI6321796, Length=201, Percent_Identity=37.3134328358209, Blast_Score=117, Evalue=1e-27,
Organism=Drosophila melanogaster, GI17136812, Length=201, Percent_Identity=35.8208955223881, Blast_Score=124, Evalue=4e-29,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21811; Mature: 21680

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGYELPSLPYDYTALEPHISKSTLEFHHDKHHASYVSKYNDAVAGTDMDSKSIEDVIKAV
CCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
AADPAKAGLFNNAAQAWNHSFYWNCMKPGGGGQPTGALADKINADFGSFDKFVEAFKTAG
HCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCC
GTQFGSGWAWLVLDNGTLKVTKTGNAGNPMTEGQTPLLTMDVWEHAYYLDYQNRRPDYIN
CCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCEEEHHHHHCEEEEECCCCCCHHHH
TFLTSLVNWDFVAANLAAA
HHHHHHHCHHHHHHHHCCC
>Mature Secondary Structure 
GYELPSLPYDYTALEPHISKSTLEFHHDKHHASYVSKYNDAVAGTDMDSKSIEDVIKAV
CCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
AADPAKAGLFNNAAQAWNHSFYWNCMKPGGGGQPTGALADKINADFGSFDKFVEAFKTAG
HCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCC
GTQFGSGWAWLVLDNGTLKVTKTGNAGNPMTEGQTPLLTMDVWEHAYYLDYQNRRPDYIN
CCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCEEEHHHHHCEEEEECCCCCCHHHH
TFLTSLVNWDFVAANLAAA
HHHHHHHCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231; 9298645 [H]