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The map label for this gene is yhcD [H]

Identifier: 170026083

GI number: 170026083

Start: 4269552

End: 4271930

Strand: Reverse

Name: yhcD [H]

Synonym: YPK_3870

Alternate gene names: 170026083

Gene position: 4271930-4269552 (Counterclockwise)

Preceding gene: 170026084

Following gene: 170026082

Centisome position: 91.1

GC content: 46.2

Gene sequence:

>2379_bases
GTGGTCGCCCGTTGTATTAATCTCCAGTGTATCGCATTCTTATTCTCTTTTTTTCCTACGCTGGCTTTCCCTGTCACAGA
AGAGGGTGAGGTGGTTTTTGACATAGAAACGCTGGAGAGATTAGGTTATTCAGCTGAATTGGCAAAATTCTTCAGCGGTC
AGGATAGATTTCTACCCGGCCAACATGATGTCACTATCATTATTAATGCCAGCAAGACCTACCGTATTGCAGCGACCTTC
GATAGCGAAGGGAAACTGTGTATGGATAAAGCATTACTGATGGCCTTGAAATTACGAAATACAGAGAGTGACGGCAGTTG
TGAGAATATGGAAGCCCGGTGGCCGGGTATGGTTGTTAAACTCTTTCCCGGCCAGTTCCGGGTGGAAATAACATTGCCGC
AAGAGGCGTTTGATCCCGAAATGGAAGGAAGTGAGTATCAGCAAGGAGGGCATGCACTATTGCTTAATTACAATATCTTT
GGCCAACGGGTCGAAAGTAACAATAGCCGCTTTAATCTTGTTCAGGGGCAATTTGAACCGGGGATTAATTTTAAAAATTG
GGTACTGAGAAACCGAGGTTCCTACAGTTATAATCAAGGAGTGAGCCAATACTATAATCAGGAAACCTCTGCTTTACGCG
CGGTTGAATCATTGAAATCCGTGGTTCAACTGGGTGAATTTGGTTTAGTGGGTAACACCTTTTCTGGTTTACCCGTAACC
GGCATTCAGTTGTATTCCGATAACGCACAACAGGATGATACACAATTGATCGTACCCATCGAGGGGATTGCCAATACCAA
TGCCACCATTGAAATCCGTCAGCGTGGGCGGGTTATTTATCGTACCATAGTGGCGCCAGGTCCTTTTTCGTTATCCAATA
TCAGTAACTTCTCAAGTGGTGTTAACACCGATGTCAGTATTATCGAAGAGGATGGCACTCAACAGAATTTTACGGTGACG
AGCGCCCTTGATATTAACGCTGAACAACAGGCATCCATCTACCAACTGGCCGTGGGCCGTTACCGGGACATGTTTACCGG
TGAGGACAGGCCGTCACCGCTGCTGCTTTCCGGAGAAATGTCATTCAATCCGGCGGCTACCTTTTATATGACGTCGGCTG
GGTTACTGTCCTCTGGCTATCAAAATATCCGTGTGCAAAATCTTTACAGTGGATGGGATCAGGCCTGGTTTTCAGCGGCA
GCAAGTTATGCTAATACCAAAGATGCAGGACAGGGATACCAATTTAGCGTTCAGAATCAGATGACGATTAACGGTAATTT
TGGTGTTTCATGGTCCTCGGTTTATGGCTCGGCCAATTACTGGTCACCGGATGATGCCCTAAGCAGTAGCAATAATCTGA
ATGACCTGATGTTTGGAAAATTAAAAAATGCAACGTCGGTAGCCGTGAGCTGGGTGCACCCACGTTGGGGGGCATTCTCC
TATGCTTTATCAAATAATATGTATTATCAGGCTTCTGGTCGTACTTACCATATTTTCTCAATTAGCGAACAATTTGGCCG
GGCGACTACCATCTTGAGTTCTCAATTAAGTTCGCAAGGGCAAAATTCGCTCTATGTTGGTATCAATATGCCATTGGGTA
ATGGGACGTTAAGTGGCCGGGTGCAACGTAACAATGGAAATGTGGCACTTGGTAGTACTTATCAAGGGCGATGGGGTGAC
AACAAAGATTATTCGGTAGGGATCAGCGGTGACAATAGGCAACGGCGTATCAATGGTTCGATGAATATAAGGACGGCCTA
TTCACAATTAACCGGTGGGGTTTCTCAAGCGACAAACAATAGCCGGTCTGCATATCTGTCATCGCGTGGTTCAGTGGCTT
ACGTGAATAACACCTTTGCCACATCGTCGTCATCGGTTGGCGATACTTTTGCGGTGGTGAACATACCCAACCAACCCGGT
TTGCGCGTTTCATCGCCGAGCAGCGGTATTGCGATTACGGATTATGCTGGGATAGCCTTGCTGCCATTAGTGAGGCCTTA
CACCGCTTCGAAAGTACAAATAAGCACGCAAACATTGCCGCTGAATATTCGGCTTAATAACACCAGTGCCGATTTGCTGA
TGACTCGAGGCTCGGTAGCAACCCATCATTTTGAGACAACAGAAACCCGCCAATTGCTGCTAACCATCCGTGGTAGTGAT
GGTGAAATGCTGCCGATTGGTGCCAATGTATTGGATGAAAAAGGTAACTTTCTGGGGACGATTATCGGTGACGGAAACTT
TATGCTGGAAAATAAGGCGATTGGCGTGACATTACGTGTTAAGGCAAATAACCGCGATGAATGTCGCGTTAACTACCGTG
AACCTGAAAAATTTGACCCCGATGTATTGTATGAAGTTGCCGATGCGGTCTGTCAGTAA

Upstream 100 bases:

>100_bases
ATATACCATTGTTTTATTTAACTCTAGGGTGATATTCGATTTTTCAATAATCAATTCACCTATTAGTTTTTATTAATAAT
TAATTTTTCAGGGAATTTTC

Downstream 100 bases:

>100_bases
GTTTTACATTATAAAAGCAGCAATGACAAAAACAGACCAAATGTGAAGACTTTTTGAATATAGGATCTCTTATGCAAAAT
TTCCCCACTCACCATCGTGA

Product: fimbrial biogenesis outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 792; Mature: 792

Protein sequence:

>792_residues
MVARCINLQCIAFLFSFFPTLAFPVTEEGEVVFDIETLERLGYSAELAKFFSGQDRFLPGQHDVTIIINASKTYRIAATF
DSEGKLCMDKALLMALKLRNTESDGSCENMEARWPGMVVKLFPGQFRVEITLPQEAFDPEMEGSEYQQGGHALLLNYNIF
GQRVESNNSRFNLVQGQFEPGINFKNWVLRNRGSYSYNQGVSQYYNQETSALRAVESLKSVVQLGEFGLVGNTFSGLPVT
GIQLYSDNAQQDDTQLIVPIEGIANTNATIEIRQRGRVIYRTIVAPGPFSLSNISNFSSGVNTDVSIIEEDGTQQNFTVT
SALDINAEQQASIYQLAVGRYRDMFTGEDRPSPLLLSGEMSFNPAATFYMTSAGLLSSGYQNIRVQNLYSGWDQAWFSAA
ASYANTKDAGQGYQFSVQNQMTINGNFGVSWSSVYGSANYWSPDDALSSSNNLNDLMFGKLKNATSVAVSWVHPRWGAFS
YALSNNMYYQASGRTYHIFSISEQFGRATTILSSQLSSQGQNSLYVGINMPLGNGTLSGRVQRNNGNVALGSTYQGRWGD
NKDYSVGISGDNRQRRINGSMNIRTAYSQLTGGVSQATNNSRSAYLSSRGSVAYVNNTFATSSSSVGDTFAVVNIPNQPG
LRVSSPSSGIAITDYAGIALLPLVRPYTASKVQISTQTLPLNIRLNNTSADLLMTRGSVATHHFETTETRQLLLTIRGSD
GEMLPIGANVLDEKGNFLGTIIGDGNFMLENKAIGVTLRVKANNRDECRVNYREPEKFDPDVLYEVADAVCQ

Sequences:

>Translated_792_residues
MVARCINLQCIAFLFSFFPTLAFPVTEEGEVVFDIETLERLGYSAELAKFFSGQDRFLPGQHDVTIIINASKTYRIAATF
DSEGKLCMDKALLMALKLRNTESDGSCENMEARWPGMVVKLFPGQFRVEITLPQEAFDPEMEGSEYQQGGHALLLNYNIF
GQRVESNNSRFNLVQGQFEPGINFKNWVLRNRGSYSYNQGVSQYYNQETSALRAVESLKSVVQLGEFGLVGNTFSGLPVT
GIQLYSDNAQQDDTQLIVPIEGIANTNATIEIRQRGRVIYRTIVAPGPFSLSNISNFSSGVNTDVSIIEEDGTQQNFTVT
SALDINAEQQASIYQLAVGRYRDMFTGEDRPSPLLLSGEMSFNPAATFYMTSAGLLSSGYQNIRVQNLYSGWDQAWFSAA
ASYANTKDAGQGYQFSVQNQMTINGNFGVSWSSVYGSANYWSPDDALSSSNNLNDLMFGKLKNATSVAVSWVHPRWGAFS
YALSNNMYYQASGRTYHIFSISEQFGRATTILSSQLSSQGQNSLYVGINMPLGNGTLSGRVQRNNGNVALGSTYQGRWGD
NKDYSVGISGDNRQRRINGSMNIRTAYSQLTGGVSQATNNSRSAYLSSRGSVAYVNNTFATSSSSVGDTFAVVNIPNQPG
LRVSSPSSGIAITDYAGIALLPLVRPYTASKVQISTQTLPLNIRLNNTSADLLMTRGSVATHHFETTETRQLLLTIRGSD
GEMLPIGANVLDEKGNFLGTIIGDGNFMLENKAIGVTLRVKANNRDECRVNYREPEKFDPDVLYEVADAVCQ
>Mature_792_residues
MVARCINLQCIAFLFSFFPTLAFPVTEEGEVVFDIETLERLGYSAELAKFFSGQDRFLPGQHDVTIIINASKTYRIAATF
DSEGKLCMDKALLMALKLRNTESDGSCENMEARWPGMVVKLFPGQFRVEITLPQEAFDPEMEGSEYQQGGHALLLNYNIF
GQRVESNNSRFNLVQGQFEPGINFKNWVLRNRGSYSYNQGVSQYYNQETSALRAVESLKSVVQLGEFGLVGNTFSGLPVT
GIQLYSDNAQQDDTQLIVPIEGIANTNATIEIRQRGRVIYRTIVAPGPFSLSNISNFSSGVNTDVSIIEEDGTQQNFTVT
SALDINAEQQASIYQLAVGRYRDMFTGEDRPSPLLLSGEMSFNPAATFYMTSAGLLSSGYQNIRVQNLYSGWDQAWFSAA
ASYANTKDAGQGYQFSVQNQMTINGNFGVSWSSVYGSANYWSPDDALSSSNNLNDLMFGKLKNATSVAVSWVHPRWGAFS
YALSNNMYYQASGRTYHIFSISEQFGRATTILSSQLSSQGQNSLYVGINMPLGNGTLSGRVQRNNGNVALGSTYQGRWGD
NKDYSVGISGDNRQRRINGSMNIRTAYSQLTGGVSQATNNSRSAYLSSRGSVAYVNNTFATSSSSVGDTFAVVNIPNQPG
LRVSSPSSGIAITDYAGIALLPLVRPYTASKVQISTQTLPLNIRLNNTSADLLMTRGSVATHHFETTETRQLLLTIRGSD
GEMLPIGANVLDEKGNFLGTIIGDGNFMLENKAIGVTLRVKANNRDECRVNYREPEKFDPDVLYEVADAVCQ

Specific function: Involved in the export and assembly of a fimbrial subunit across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1789610, Length=809, Percent_Identity=27.4412855377009, Blast_Score=289, Evalue=5e-79,
Organism=Escherichia coli, GI1786332, Length=798, Percent_Identity=25.5639097744361, Blast_Score=167, Evalue=3e-42,
Organism=Escherichia coli, GI1786744, Length=302, Percent_Identity=32.7814569536424, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI87081778, Length=800, Percent_Identity=23.5, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1788427, Length=757, Percent_Identity=23.6459709379128, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1790772, Length=326, Percent_Identity=29.4478527607362, Blast_Score=108, Evalue=2e-24,
Organism=Escherichia coli, GI1789533, Length=359, Percent_Identity=26.7409470752089, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI1787172, Length=322, Percent_Identity=27.9503105590062, Blast_Score=98, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 86919; Mature: 86919

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: PS00061 ADH_SHORT ; PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVARCINLQCIAFLFSFFPTLAFPVTEEGEVVFDIETLERLGYSAELAKFFSGQDRFLPG
CCEEEECHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHCCCHHHHHHHHCCCCCCCCC
QHDVTIIINASKTYRIAATFDSEGKLCMDKALLMALKLRNTESDGSCENMEARWPGMVVK
CCCEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEE
LFPGQFRVEITLPQEAFDPEMEGSEYQQGGHALLLNYNIFGQRVESNNSRFNLVQGQFEP
ECCCEEEEEEECCHHHCCCCCCCCHHCCCCCEEEEEEEEEEEEECCCCCEEEEEECCCCC
GINFKNWVLRNRGSYSYNQGVSQYYNQETSALRAVESLKSVVQLGEFGLVGNTFSGLPVT
CCCHHHEEEECCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCEE
GIQLYSDNAQQDDTQLIVPIEGIANTNATIEIRQRGRVIYRTIVAPGPFSLSNISNFSSG
EEEEECCCCCCCCCEEEEEECCCCCCCCEEEEECCCCEEEEEEECCCCCCHHCCCCCCCC
VNTDVSIIEEDGTQQNFTVTSALDINAEQQASIYQLAVGRYRDMFTGEDRPSPLLLSGEM
CCCCEEEEECCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC
SFNPAATFYMTSAGLLSSGYQNIRVQNLYSGWDQAWFSAAASYANTKDAGQGYQFSVQNQ
CCCCCEEEEEECCHHHHCCCCCEEEEEHHCCHHHHHHHHHHHCCCCCCCCCCEEEEECCE
MTINGNFGVSWSSVYGSANYWSPDDALSSSNNLNDLMFGKLKNATSVAVSWVHPRWGAFS
EEECCCCCEEEHHHCCCCCCCCCHHHCCCCCCCCHHHHHCCCCCCEEEEEEECCCCCEEE
YALSNNMYYQASGRTYHIFSISEQFGRATTILSSQLSSQGQNSLYVGINMPLGNGTLSGR
EEECCCEEEEECCCEEEEEEECHHHCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEE
VQRNNGNVALGSTYQGRWGDNKDYSVGISGDNRQRRINGSMNIRTAYSQLTGGVSQATNN
EEECCCCEEECCCCCCCCCCCCCEEEEECCCCCEEEECCCEEEEEHHHHHCCCHHHCCCC
SRSAYLSSRGSVAYVNNTFATSSSSVGDTFAVVNIPNQPGLRVSSPSSGIAITDYAGIAL
CCEEEEECCCCEEEEECEECCCCCCCCCEEEEEECCCCCCCEEECCCCCEEEEECCCEEE
LPLVRPYTASKVQISTQTLPLNIRLNNTSADLLMTRGSVATHHFETTETRQLLLTIRGSD
EHHCCCCCCCEEEEEEEEEEEEEEECCCCCEEEEECCCCEEEEECCCCCEEEEEEEECCC
GEMLPIGANVLDEKGNFLGTIIGDGNFMLENKAIGVTLRVKANNRDECRVNYREPEKFDP
CCEEEECCHHCCCCCCEEEEEEECCCEEEECCEEEEEEEEECCCCCCEEEECCCCCCCCH
DVLYEVADAVCQ
HHHHHHHHHHCC
>Mature Secondary Structure
MVARCINLQCIAFLFSFFPTLAFPVTEEGEVVFDIETLERLGYSAELAKFFSGQDRFLPG
CCEEEECHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHCCCHHHHHHHHCCCCCCCCC
QHDVTIIINASKTYRIAATFDSEGKLCMDKALLMALKLRNTESDGSCENMEARWPGMVVK
CCCEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEE
LFPGQFRVEITLPQEAFDPEMEGSEYQQGGHALLLNYNIFGQRVESNNSRFNLVQGQFEP
ECCCEEEEEEECCHHHCCCCCCCCHHCCCCCEEEEEEEEEEEEECCCCCEEEEEECCCCC
GINFKNWVLRNRGSYSYNQGVSQYYNQETSALRAVESLKSVVQLGEFGLVGNTFSGLPVT
CCCHHHEEEECCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCEE
GIQLYSDNAQQDDTQLIVPIEGIANTNATIEIRQRGRVIYRTIVAPGPFSLSNISNFSSG
EEEEECCCCCCCCCEEEEEECCCCCCCCEEEEECCCCEEEEEEECCCCCCHHCCCCCCCC
VNTDVSIIEEDGTQQNFTVTSALDINAEQQASIYQLAVGRYRDMFTGEDRPSPLLLSGEM
CCCCEEEEECCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC
SFNPAATFYMTSAGLLSSGYQNIRVQNLYSGWDQAWFSAAASYANTKDAGQGYQFSVQNQ
CCCCCEEEEEECCHHHHCCCCCEEEEEHHCCHHHHHHHHHHHCCCCCCCCCCEEEEECCE
MTINGNFGVSWSSVYGSANYWSPDDALSSSNNLNDLMFGKLKNATSVAVSWVHPRWGAFS
EEECCCCCEEEHHHCCCCCCCCCHHHCCCCCCCCHHHHHCCCCCCEEEEEEECCCCCEEE
YALSNNMYYQASGRTYHIFSISEQFGRATTILSSQLSSQGQNSLYVGINMPLGNGTLSGR
EEECCCEEEEECCCEEEEEEECHHHCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEE
VQRNNGNVALGSTYQGRWGDNKDYSVGISGDNRQRRINGSMNIRTAYSQLTGGVSQATNN
EEECCCCEEECCCCCCCCCCCCCEEEEECCCCCEEEECCCEEEEEHHHHHCCCHHHCCCC
SRSAYLSSRGSVAYVNNTFATSSSSVGDTFAVVNIPNQPGLRVSSPSSGIAITDYAGIAL
CCEEEEECCCCEEEEECEECCCCCCCCCEEEEEECCCCCCCEEECCCCCEEEEECCCEEE
LPLVRPYTASKVQISTQTLPLNIRLNNTSADLLMTRGSVATHHFETTETRQLLLTIRGSD
EHHCCCCCCCEEEEEEEEEEEEEEECCCCCEEEEECCCCEEEEECCCCCEEEEEEEECCC
GEMLPIGANVLDEKGNFLGTIIGDGNFMLENKAIGVTLRVKANNRDECRVNYREPEKFDP
CCEEEECCHHCCCCCCEEEEEEECCCEEEECCEEEEEEEEECCCCCCEEEECCCCCCCCH
DVLYEVADAVCQ
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]