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The map label for this gene is araP [H]

Identifier: 170025923

GI number: 170025923

Start: 4094532

End: 4095416

Strand: Reverse

Name: araP [H]

Synonym: YPK_3708

Alternate gene names: 170025923

Gene position: 4095416-4094532 (Counterclockwise)

Preceding gene: 170025924

Following gene: 170025922

Centisome position: 87.33

GC content: 52.77

Gene sequence:

>885_bases
ATGATAACGCTAACCCCCCGACTGAAACGTAACCTGGTTCCGTGGCTGTTCCTGGCCCCGGCACTGGTCATCTTCACCTG
GTTTAAATTCATCCCGATGTTGCAAGGGCTGGTGATGAGTTTCTACAAGGTTAACTTTAACCAGCCAAACGAGTGGGTCG
GGTTTGCCAACTTTTCCCGCGCCTTTGGTGATGAAGCGCTGCACTCGGCTGTTTTCAACACGTTGTTATATGTCCTGGTC
ACCATGGTGGTGGCCGCGTTTATCGCCTTCTTTCTGGCGATGTTATTGGAAGGGCCGGCACGGCATTTGCGTTTTATTCG
TACCGCCATCTTCCTGCCCGCAGTGACCAGTGCGGCGATTGTCGCCGAAATGTGGCGCATTCTGTTCAACCCGACCAGCA
ACGGGGTGGTGAACCACGTTTTATCGTGGTTCAGCATTGAAGCGCAGGGGTTTCTGGCGGATACCGATCAGGCGTTGTGG
ACAGTAATGCTGCTGCATATCTGGAAAGCAGTGCCTTACAACATGGTGATTTTTATCGCCGGGCTGGTAGGGATTAGCCG
TGATTTATACGACGCGTCAAACGTGGATGGGGCCAACTGGTGGAACCGCCTGCGTTATGTGACGTTACCGGGCATGATCC
CCGCGCTCTCTGTGGTCCTGATGCTGTCATTTATCCGTGGCTTCCGCGTGTTTGCCGAAGTTTACGCCACCACTGGCGGT
GGCCCGTCTAATGCGACGGAAATGATCATGACGCATATCTATAAATTGGGCTTTGAGCAGTTTGATTATGGTTATGCCTC
TGCGGTGTCCTTCCTGCTATTTGCGTTCACTGTGATGCTGACGATGGGTCATCTCACCTTGAAAAAGCGGATCGCCCGTT
ACTAA

Upstream 100 bases:

>100_bases
GCCAACTGTGACAGTGATATCGCCGCAGAATTAAAAGCGGTGAATCAGAAAGTTAATGATGAGTTGGCTAAACAGAACGT
CTTAGGGCAGTGAGTGAATA

Downstream 100 bases:

>100_bases
CCGAGCCGGAGACTGGTAATGAAAAGTAAAAGCTGGAACAGTATCGGCCGTTGGATAATTTATGGTCTGCTGCTGATTGT
GTTTGTTGGCCCGTACTGGG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MITLTPRLKRNLVPWLFLAPALVIFTWFKFIPMLQGLVMSFYKVNFNQPNEWVGFANFSRAFGDEALHSAVFNTLLYVLV
TMVVAAFIAFFLAMLLEGPARHLRFIRTAIFLPAVTSAAIVAEMWRILFNPTSNGVVNHVLSWFSIEAQGFLADTDQALW
TVMLLHIWKAVPYNMVIFIAGLVGISRDLYDASNVDGANWWNRLRYVTLPGMIPALSVVLMLSFIRGFRVFAEVYATTGG
GPSNATEMIMTHIYKLGFEQFDYGYASAVSFLLFAFTVMLTMGHLTLKKRIARY

Sequences:

>Translated_294_residues
MITLTPRLKRNLVPWLFLAPALVIFTWFKFIPMLQGLVMSFYKVNFNQPNEWVGFANFSRAFGDEALHSAVFNTLLYVLV
TMVVAAFIAFFLAMLLEGPARHLRFIRTAIFLPAVTSAAIVAEMWRILFNPTSNGVVNHVLSWFSIEAQGFLADTDQALW
TVMLLHIWKAVPYNMVIFIAGLVGISRDLYDASNVDGANWWNRLRYVTLPGMIPALSVVLMLSFIRGFRVFAEVYATTGG
GPSNATEMIMTHIYKLGFEQFDYGYASAVSFLLFAFTVMLTMGHLTLKKRIARY
>Mature_294_residues
MITLTPRLKRNLVPWLFLAPALVIFTWFKFIPMLQGLVMSFYKVNFNQPNEWVGFANFSRAFGDEALHSAVFNTLLYVLV
TMVVAAFIAFFLAMLLEGPARHLRFIRTAIFLPAVTSAAIVAEMWRILFNPTSNGVVNHVLSWFSIEAQGFLADTDQALW
TVMLLHIWKAVPYNMVIFIAGLVGISRDLYDASNVDGANWWNRLRYVTLPGMIPALSVVLMLSFIRGFRVFAEVYATTGG
GPSNATEMIMTHIYKLGFEQFDYGYASAVSFLLFAFTVMLTMGHLTLKKRIARY

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789861, Length=299, Percent_Identity=29.4314381270903, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1787570, Length=248, Percent_Identity=29.4354838709677, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1790465, Length=238, Percent_Identity=28.5714285714286, Blast_Score=85, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33285; Mature: 33285

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]