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The map label for this gene is intB [H]

Identifier: 170025883

GI number: 170025883

Start: 4049912

End: 4050721

Strand: Reverse

Name: intB [H]

Synonym: YPK_3668

Alternate gene names: 170025883

Gene position: 4050721-4049912 (Counterclockwise)

Preceding gene: 170025884

Following gene: 170025882

Centisome position: 86.38

GC content: 49.26

Gene sequence:

>810_bases
GTGCTGATCGCCGAGGGTTACGCAACCGGCGTTACCGTTTCGTTACTGGGTAATGGGGTAGTACTGGCCGCACTGGACGA
AGGCAACCTAATTCACGTCGCGAAGGTCTGCCGGGCAAAGTGGCCACTGGCAAAAATCATCATTGCCGCAGATAACGACT
GGCACGAACCGGGCGAATGTGACGAAAAAGGCAAACCCAAGCAGAATATTGGCGTTATCTCCGCTGAAAAAGCCGCCATT
TCCGTTTCTGGCTGGGTAGCGGTAGAATTGACTTTATTGGTCTTTATCCGTTCCAGTGAATTACGCTTTGCCCGTTGGTC
AGAAGTTGATTTTGAAACCGCCATGTGGACCATCCCTGGAGAACGTGAGCCATTGGAAGGTGTGAAGCATTCACATCGAG
GTTCAAAAATGCGCACTCCCCATCTTGTCCCCTTATCCCGCCAGGCTCTCGCCATTCTGGAAAAGATCAAAAGCATGAGT
GGAAACCGTGAACTGATCTTTATCGGTGATCATGACCCACGTAAGCCAATGAGTGAGAACACGGTGAATAAAGCACTTCG
AGTGATGGGCTACGATACGAAAGTTGAAGTTTGTGGTCATGGTTTTAGAACAATGGCTTGTAGTTCGTTGATTGAATCGG
GATTATGGTCGAGAGATGCGGTTGAGCGGCAGATGAGTCACCAGGAACGTAACTCTGTGCGTGCGGCTTATATTCATAAG
GCCGAGCACTTAGATGAACGCAGATTGATGATTCAGTGGTGGGCGGATTTTTTTGGAGGCAAACAGGCAGCAAGCTATTT
CACCTTTTGA

Upstream 100 bases:

>100_bases
CCCTGACGGCTCGAAACGGTTATTAGCGGGTACCACGAAAAAAGGTTCGTTTATTCCGGTAAGGCTCCAGTCACCAACAG
AGGACGAACAGCCTGTAACG

Downstream 100 bases:

>100_bases
TTATGCAAAAGTAAATAATCCATTCAAATAACCATAACTAGCCTTTTATCGTAATACATCTCATTCAATAATTTTTTATA
TCACTGCAAACCTCTGTCAA

Product: integrase family protein

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MLIAEGYATGVTVSLLGNGVVLAALDEGNLIHVAKVCRAKWPLAKIIIAADNDWHEPGECDEKGKPKQNIGVISAEKAAI
SVSGWVAVELTLLVFIRSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLVPLSRQALAILEKIKSMS
GNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRDAVERQMSHQERNSVRAAYIHK
AEHLDERRLMIQWWADFFGGKQAASYFTF

Sequences:

>Translated_269_residues
MLIAEGYATGVTVSLLGNGVVLAALDEGNLIHVAKVCRAKWPLAKIIIAADNDWHEPGECDEKGKPKQNIGVISAEKAAI
SVSGWVAVELTLLVFIRSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLVPLSRQALAILEKIKSMS
GNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRDAVERQMSHQERNSVRAAYIHK
AEHLDERRLMIQWWADFFGGKQAASYFTF
>Mature_269_residues
MLIAEGYATGVTVSLLGNGVVLAALDEGNLIHVAKVCRAKWPLAKIIIAADNDWHEPGECDEKGKPKQNIGVISAEKAAI
SVSGWVAVELTLLVFIRSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLVPLSRQALAILEKIKSMS
GNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRDAVERQMSHQERNSVRAAYIHK
AEHLDERRLMIQWWADFFGGKQAASYFTF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788974, Length=188, Percent_Identity=38.2978723404255, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1788690, Length=210, Percent_Identity=33.8095238095238, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI145693166, Length=176, Percent_Identity=36.9318181818182, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 30112; Mature: 30112

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIAEGYATGVTVSLLGNGVVLAALDEGNLIHVAKVCRAKWPLAKIIIAADNDWHEPGEC
CEEECCCCCCEEEEEECCCEEEEEECCCCEEHHHHHHHCCCCEEEEEEECCCCCCCCCCC
DEKGKPKQNIGVISAEKAAISVSGWVAVELTLLVFIRSSELRFARWSEVDFETAMWTIPG
CCCCCCCCCCCEEEECCEEEEECCHHHHEEEEHEEEECCCCCEEECCCCCCCCEEEECCC
EREPLEGVKHSHRGSKMRTPHLVPLSRQALAILEKIKSMSGNRELIFIGDHDPRKPMSEN
CCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHH
TVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRDAVERQMSHQERNSVRAAYIHK
HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHH
AEHLDERRLMIQWWADFFGGKQAASYFTF
HHHHHHHHHHHHHHHHHHCCCHHHHCCCC
>Mature Secondary Structure
MLIAEGYATGVTVSLLGNGVVLAALDEGNLIHVAKVCRAKWPLAKIIIAADNDWHEPGEC
CEEECCCCCCEEEEEECCCEEEEEECCCCEEHHHHHHHCCCCEEEEEEECCCCCCCCCCC
DEKGKPKQNIGVISAEKAAISVSGWVAVELTLLVFIRSSELRFARWSEVDFETAMWTIPG
CCCCCCCCCCCEEEECCEEEEECCHHHHEEEEHEEEECCCCCEEECCCCCCCCEEEECCC
EREPLEGVKHSHRGSKMRTPHLVPLSRQALAILEKIKSMSGNRELIFIGDHDPRKPMSEN
CCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHH
TVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRDAVERQMSHQERNSVRAAYIHK
HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHH
AEHLDERRLMIQWWADFFGGKQAASYFTF
HHHHHHHHHHHHHHHHHHCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]