| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is hsdR [H]
Identifier: 170025881
GI number: 170025881
Start: 4046986
End: 4049631
Strand: Direct
Name: hsdR [H]
Synonym: YPK_3666
Alternate gene names: 170025881
Gene position: 4046986-4049631 (Clockwise)
Preceding gene: 170025880
Following gene: 170025886
Centisome position: 86.3
GC content: 44.63
Gene sequence:
>2646_bases ATGGAGCCAAACGAGGCCAAATACTTTGCCAACCCCGGGCTAGACGGCAAGTTTAATCCCGACTATCAATTTAACTGGGC CGATTTTAATAACGAACCCATGAACCACTGGAAAGACATCGCCTCTACCTTGCTTTCTATCCCTATGGCACACCAGTTGA TTGGCTTTTATACCGTCGCCGACGATACCGACGGCGTGCTTAAAGTGATGCGCAGTTATCAGTATTACGCTGCCAATGCA ATATCTGACAAAGTGGCCAAAACCAACTGGCAGCAACTGGGTAGTGCGGCCAATAACCCTGACCGCCTCGGTGGTTATGT GTGGCATACCACCGGTTCGGGTAAAACCATGACCAGCTTTAAATCGGCGCAGTTGATTGCGCAATCGAAAGATGCCGATA AAGTGATTTTTTTAATGGACAGGATTGAGCTGGGCACCCAGTCGCTGGCGGAATACCGCAATTTTGCTGGCGATGGCGAA GACGTTCAAGCCACTGAAAATACTCATGTACTCATTACCAAATTAAAAAGCACCGCCCGCGCCGATACGTTAATTGTTAG CTCTATTCAAAAAATGAGTAATATTTTTGAAGCGGTAGACGATGAAGGCACCGCCACAAACTCTGCGGATATTGAAAAAA TTCGCGCTAAGCGTTTGGTGTTTATTATCGATGAGGCGCACCGCTCTACCTTTGGCGATATGCTGATTATTATTAAACGT ACCTTTCCGCGCGCCTTGTTTTTTGGCTTTACCGGCACACCGATTCAAGAAGAAAACGAAAAAAACGGCAATACCACCAG TACCGTATTTGGCAACGAGCTACACCGCTACAGCATTGCCGACGGTATTCGCGACGGCAATGTGCTGGGCTTTGACCCTT ACAAAGTCTGTACCTTTAAAGATAAAGATCTACGCCAGGCCGTCGCCCTTGAACAGGCTAAGGCCGATTCGGTTGCAGAT GCAATGTCTACGGCAGCCAAAAAGAAAAAATTTAATTATTTTATGAATGATGTGCCAATGGCTGGTCATAAAGATGCAAC AGGTAAGTATGTCAAAGGCATAGAAGATTATGTGCCAAAAGAGCAATATCTCACTGAAGCCCATCAAGAAAAAGTAGTAG AAGATATTCTGGCAGAGTGGGATGTGCTCAGCCAGGCCAATAAGTTTCACGCTATTTTGGCCACTAGCAGCATTGCCGAA GCCATTGACTATTACCGCCGTTTAAAAGCCGCCAAACCTGAACTTAAAGTATCGGCCCTATTTGACCCAAATATTGATAA CGACGGCAGCAGCGACCGTGGCCCCACCTTTAAAGGCGATGGCCTGGACGAAATTATGGCCGACTATAACGCACGTTATG GCCAGGATTTTGATTTTGCCCGCCATGCAGCCTTTAAAAAAGATTTAGCGGCACGCCTTGCCCATAAAAAGCCTTACGAG CGCATCCATACCGAGCCTTCAAAGCAATTAGATTTACTGATTGTAGTGGATCAAATGCTCACTGGCTTTGACTCTAAATG GCTCAATACCTTGTATTTAGACAAGGTGATTAAATACCAAAATATTATTCAAGCGTTCTCGCGCACCAATCGCTTGTTTG GCCCCGACAAACCCCACGGCATCATCCGTTATTATCGTTATCCACACACCATGGAGCAGTACATTAACGATGCGGTAAAA CTCTATTCCGGCGACAGACCTATCGGCTTATTTGTTGATAGGTTAGAAAGTAACCTTAAAGCCATAAATGAATTAGTGGC GGACATTACCGAGCTATTCGTCAGTGCGGGTGTTGAGAACTTTGAAAAACTGCCAGACGATATAGAAACCTGTGCCCAAT TCGCCAAATTATTTAACACCTTTAGCCAACACCTGGCAGCGGCTAAAGTACAAGGTTTTCATTGGGAACAGTCGATCTAT TCCTTTACTGAAAATGATGTAGAACATGAGGTAACGCTGGCCATAGACGAACAAACTTACCTGAGCCTGGTTCTGCGCTA TAAAGAGCTGGTAGGCAAAGGTGATGGTGGTGGCGCAGGTGAGGGCGATGTGCCCTTTGATATCAGTGGTTATTTAACTG AAATAGATACCGGCAAAATCGATGCCGACTACATGAACAGCCGCTTTGATAAATATTTAAAAGAGCTGAACCAACACCAA GACTCTGCGAATATTGAAACCACATTAAATGAGCTACACAAGTCGTTTGCATCGCTCACCCAAAGCGAGCAAAAGTACGC CAAGCTCTTCTTGCACGACTTGCAGCGCGGCGATGCGCAGTTAATTGAAGGCCATACTTTTAGAGACTACATCAACACCT ACAAAGATAACGCTGAAAATGCGCAATTAAACGCCGTTGTTAATGCTCTTGGTTTAGATAAAGAACGGCTCATAGCATTA ATGGCTGATAGTGTTAATGACAAGAATCTCAACGACTTTGGTCGCTTCGACGCATTAAAAGATTCGGTAAATAAAGCGAA AGCCAAGATCTATTTTGAAAAACAAGACGGCGTAATCATACCTCCATTTAAATTGAATATACGTATTGATCAGTTTTTAA AGCAGTTTATTTTGGCACAAACGGATGATTTCTTAAGTGACAGAGATGTTGTTGGTGATGTGATGGACATCCCTCCCTCA GCGTAA
Upstream 100 bases:
>100_bases CAGCGGCATTCCGGTTAGCCAGGCCGTAAACCAAATTGAAAAGTACAGCAAAGAGGGTGTGTTTAACGGCCTGTTTTCGC TTATCCAAGTGTTTGTGGCC
Downstream 100 bases:
>100_bases GTCCTGCCACACTTATGCTGAGTGTTCTTTTTTCAGAGGTACTGCATCATGAACTCGATAAAAGTCATTGGTATCGATCT GGCTAAATCTGTCTTTCAGA
Product: Type I site-specific deoxyribonuclease
Products: NA
Alternate protein names: Type I restriction enzyme R protein [H]
Number of amino acids: Translated: 881; Mature: 881
Protein sequence:
>881_residues MEPNEAKYFANPGLDGKFNPDYQFNWADFNNEPMNHWKDIASTLLSIPMAHQLIGFYTVADDTDGVLKVMRSYQYYAANA ISDKVAKTNWQQLGSAANNPDRLGGYVWHTTGSGKTMTSFKSAQLIAQSKDADKVIFLMDRIELGTQSLAEYRNFAGDGE DVQATENTHVLITKLKSTARADTLIVSSIQKMSNIFEAVDDEGTATNSADIEKIRAKRLVFIIDEAHRSTFGDMLIIIKR TFPRALFFGFTGTPIQEENEKNGNTTSTVFGNELHRYSIADGIRDGNVLGFDPYKVCTFKDKDLRQAVALEQAKADSVAD AMSTAAKKKKFNYFMNDVPMAGHKDATGKYVKGIEDYVPKEQYLTEAHQEKVVEDILAEWDVLSQANKFHAILATSSIAE AIDYYRRLKAAKPELKVSALFDPNIDNDGSSDRGPTFKGDGLDEIMADYNARYGQDFDFARHAAFKKDLAARLAHKKPYE RIHTEPSKQLDLLIVVDQMLTGFDSKWLNTLYLDKVIKYQNIIQAFSRTNRLFGPDKPHGIIRYYRYPHTMEQYINDAVK LYSGDRPIGLFVDRLESNLKAINELVADITELFVSAGVENFEKLPDDIETCAQFAKLFNTFSQHLAAAKVQGFHWEQSIY SFTENDVEHEVTLAIDEQTYLSLVLRYKELVGKGDGGGAGEGDVPFDISGYLTEIDTGKIDADYMNSRFDKYLKELNQHQ DSANIETTLNELHKSFASLTQSEQKYAKLFLHDLQRGDAQLIEGHTFRDYINTYKDNAENAQLNAVVNALGLDKERLIAL MADSVNDKNLNDFGRFDALKDSVNKAKAKIYFEKQDGVIIPPFKLNIRIDQFLKQFILAQTDDFLSDRDVVGDVMDIPPS A
Sequences:
>Translated_881_residues MEPNEAKYFANPGLDGKFNPDYQFNWADFNNEPMNHWKDIASTLLSIPMAHQLIGFYTVADDTDGVLKVMRSYQYYAANA ISDKVAKTNWQQLGSAANNPDRLGGYVWHTTGSGKTMTSFKSAQLIAQSKDADKVIFLMDRIELGTQSLAEYRNFAGDGE DVQATENTHVLITKLKSTARADTLIVSSIQKMSNIFEAVDDEGTATNSADIEKIRAKRLVFIIDEAHRSTFGDMLIIIKR TFPRALFFGFTGTPIQEENEKNGNTTSTVFGNELHRYSIADGIRDGNVLGFDPYKVCTFKDKDLRQAVALEQAKADSVAD AMSTAAKKKKFNYFMNDVPMAGHKDATGKYVKGIEDYVPKEQYLTEAHQEKVVEDILAEWDVLSQANKFHAILATSSIAE AIDYYRRLKAAKPELKVSALFDPNIDNDGSSDRGPTFKGDGLDEIMADYNARYGQDFDFARHAAFKKDLAARLAHKKPYE RIHTEPSKQLDLLIVVDQMLTGFDSKWLNTLYLDKVIKYQNIIQAFSRTNRLFGPDKPHGIIRYYRYPHTMEQYINDAVK LYSGDRPIGLFVDRLESNLKAINELVADITELFVSAGVENFEKLPDDIETCAQFAKLFNTFSQHLAAAKVQGFHWEQSIY SFTENDVEHEVTLAIDEQTYLSLVLRYKELVGKGDGGGAGEGDVPFDISGYLTEIDTGKIDADYMNSRFDKYLKELNQHQ DSANIETTLNELHKSFASLTQSEQKYAKLFLHDLQRGDAQLIEGHTFRDYINTYKDNAENAQLNAVVNALGLDKERLIAL MADSVNDKNLNDFGRFDALKDSVNKAKAKIYFEKQDGVIIPPFKLNIRIDQFLKQFILAQTDDFLSDRDVVGDVMDIPPS A >Mature_881_residues MEPNEAKYFANPGLDGKFNPDYQFNWADFNNEPMNHWKDIASTLLSIPMAHQLIGFYTVADDTDGVLKVMRSYQYYAANA ISDKVAKTNWQQLGSAANNPDRLGGYVWHTTGSGKTMTSFKSAQLIAQSKDADKVIFLMDRIELGTQSLAEYRNFAGDGE DVQATENTHVLITKLKSTARADTLIVSSIQKMSNIFEAVDDEGTATNSADIEKIRAKRLVFIIDEAHRSTFGDMLIIIKR TFPRALFFGFTGTPIQEENEKNGNTTSTVFGNELHRYSIADGIRDGNVLGFDPYKVCTFKDKDLRQAVALEQAKADSVAD AMSTAAKKKKFNYFMNDVPMAGHKDATGKYVKGIEDYVPKEQYLTEAHQEKVVEDILAEWDVLSQANKFHAILATSSIAE AIDYYRRLKAAKPELKVSALFDPNIDNDGSSDRGPTFKGDGLDEIMADYNARYGQDFDFARHAAFKKDLAARLAHKKPYE RIHTEPSKQLDLLIVVDQMLTGFDSKWLNTLYLDKVIKYQNIIQAFSRTNRLFGPDKPHGIIRYYRYPHTMEQYINDAVK LYSGDRPIGLFVDRLESNLKAINELVADITELFVSAGVENFEKLPDDIETCAQFAKLFNTFSQHLAAAKVQGFHWEQSIY SFTENDVEHEVTLAIDEQTYLSLVLRYKELVGKGDGGGAGEGDVPFDISGYLTEIDTGKIDADYMNSRFDKYLKELNQHQ DSANIETTLNELHKSFASLTQSEQKYAKLFLHDLQRGDAQLIEGHTFRDYINTYKDNAENAQLNAVVNALGLDKERLIAL MADSVNDKNLNDFGRFDALKDSVNKAKAKIYFEKQDGVIIPPFKLNIRIDQFLKQFILAQTDDFLSDRDVVGDVMDIPPS A
Specific function: Subunit R is required for both nuclease and ATPase activities, but not for modification [H]
COG id: COG0610
COG function: function code V; Type I site-specific restriction-modification system, R (restriction) subunit and related helicases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase ATP-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR014021 - InterPro: IPR004473 - InterPro: IPR006935 - InterPro: IPR007409 - InterPro: IPR022625 [H]
Pfam domain/function: PF12008 EcoR124_C; PF04313 HSDR_N; PF04851 ResIII [H]
EC number: =3.1.21.3 [H]
Molecular weight: Translated: 99341; Mature: 99341
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEPNEAKYFANPGLDGKFNPDYQFNWADFNNEPMNHWKDIASTLLSIPMAHQLIGFYTVA CCCCCCCEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEC DDTDGVLKVMRSYQYYAANAISDKVAKTNWQQLGSAANNPDRLGGYVWHTTGSGKTMTSF CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCEEEEECCCCCCHHHH KSAQLIAQSKDADKVIFLMDRIELGTQSLAEYRNFAGDGEDVQATENTHVLITKLKSTAR HHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCEECCCCEEEEEEHHHHHH ADTLIVSSIQKMSNIFEAVDDEGTATNSADIEKIRAKRLVFIIDEAHRSTFGDMLIIIKR HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHEEEEEEHHHHHHHCCEEEEEEH TFPRALFFGFTGTPIQEENEKNGNTTSTVFGNELHRYSIADGIRDGNVLGFDPYKVCTFK HCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCEECCCCEEEEEEC DKDLRQAVALEQAKADSVADAMSTAAKKKKFNYFMNDVPMAGHKDATGKYVKGIEDYVPK CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCH EQYLTEAHQEKVVEDILAEWDVLSQANKFHAILATSSIAEAIDYYRRLKAAKPELKVSAL HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE FDPNIDNDGSSDRGPTFKGDGLDEIMADYNARYGQDFDFARHAAFKKDLAARLAHKKPYE ECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHH RIHTEPSKQLDLLIVVDQMLTGFDSKWLNTLYLDKVIKYQNIIQAFSRTNRLFGPDKPHG HHCCCCCHHHHHHEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC IIRYYRYPHTMEQYINDAVKLYSGDRPIGLFVDRLESNLKAINELVADITELFVSAGVEN EEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH FEKLPDDIETCAQFAKLFNTFSQHLAAAKVQGFHWEQSIYSFTENDVEHEVTLAIDEQTY HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEECHHHH LSLVLRYKELVGKGDGGGAGEGDVPFDISGYLTEIDTGKIDADYMNSRFDKYLKELNQHQ HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCC DSANIETTLNELHKSFASLTQSEQKYAKLFLHDLQRGDAQLIEGHTFRDYINTYKDNAEN CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHCCCCC AQLNAVVNALGLDKERLIALMADSVNDKNLNDFGRFDALKDSVNKAKAKIYFEKQDGVII HHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCEEE PPFKLNIRIDQFLKQFILAQTDDFLSDRDVVGDVMDIPPSA CCEEEEEEHHHHHHHHHHHCCHHHCCCHHHHHHHHCCCCCC >Mature Secondary Structure MEPNEAKYFANPGLDGKFNPDYQFNWADFNNEPMNHWKDIASTLLSIPMAHQLIGFYTVA CCCCCCCEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEC DDTDGVLKVMRSYQYYAANAISDKVAKTNWQQLGSAANNPDRLGGYVWHTTGSGKTMTSF CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCEEEEECCCCCCHHHH KSAQLIAQSKDADKVIFLMDRIELGTQSLAEYRNFAGDGEDVQATENTHVLITKLKSTAR HHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCEECCCCEEEEEEHHHHHH ADTLIVSSIQKMSNIFEAVDDEGTATNSADIEKIRAKRLVFIIDEAHRSTFGDMLIIIKR HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHEEEEEEHHHHHHHCCEEEEEEH TFPRALFFGFTGTPIQEENEKNGNTTSTVFGNELHRYSIADGIRDGNVLGFDPYKVCTFK HCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCEECCCCEEEEEEC DKDLRQAVALEQAKADSVADAMSTAAKKKKFNYFMNDVPMAGHKDATGKYVKGIEDYVPK CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCH EQYLTEAHQEKVVEDILAEWDVLSQANKFHAILATSSIAEAIDYYRRLKAAKPELKVSAL HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE FDPNIDNDGSSDRGPTFKGDGLDEIMADYNARYGQDFDFARHAAFKKDLAARLAHKKPYE ECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHH RIHTEPSKQLDLLIVVDQMLTGFDSKWLNTLYLDKVIKYQNIIQAFSRTNRLFGPDKPHG HHCCCCCHHHHHHEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC IIRYYRYPHTMEQYINDAVKLYSGDRPIGLFVDRLESNLKAINELVADITELFVSAGVEN EEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH FEKLPDDIETCAQFAKLFNTFSQHLAAAKVQGFHWEQSIYSFTENDVEHEVTLAIDEQTY HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEECHHHH LSLVLRYKELVGKGDGGGAGEGDVPFDISGYLTEIDTGKIDADYMNSRFDKYLKELNQHQ HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCC DSANIETTLNELHKSFASLTQSEQKYAKLFLHDLQRGDAQLIEGHTFRDYINTYKDNAEN CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHCCCCC AQLNAVVNALGLDKERLIALMADSVNDKNLNDFGRFDALKDSVNKAKAKIYFEKQDGVII HHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCEEE PPFKLNIRIDQFLKQFILAQTDDFLSDRDVVGDVMDIPPSA CCEEEEEEHHHHHHHHHHHCCHHHCCCHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA