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The map label for this gene is 170025767

Identifier: 170025767

GI number: 170025767

Start: 3910819

End: 3912174

Strand: Reverse

Name: 170025767

Synonym: YPK_3552

Alternate gene names: NA

Gene position: 3912174-3910819 (Counterclockwise)

Preceding gene: 170025768

Following gene: 170025766

Centisome position: 83.43

GC content: 50.74

Gene sequence:

>1356_bases
ATGCTGCCAAAACAACGTGTTGCTTGGGTGGAAGGGATGCTGATGGAACCCCAGCATTTTCAACAACAGGAACGATATCT
AGAACATTTAACTGAAATGCGGGCACGTAGCCTCAGCGCGCTGGCATGGGGCTTCCATAGCCTAAGTATCAATCAAGGGC
TGCTGGATCAGGGCAAGATCGCCCTCAATCAGGCCAGTGGTGTTTTCCCTGACGGTACACCTTTTCATATGGCGGGTGAT
GAGCCATTACCGCTACCTTTTGATCCGGGGGAGAACTGCCAAGGCAGTGTCGTGTGCCTTTCGGTCCTGATGGATATACC
CGGCAATACCTATATTGATCTGAAGAAGAGCAACCAAGGTAGCCGTTTCGTTGCGCTGGATGCTGAAGTTCAAGACAGAA
ACCATGGCGTCGCTGCTGAAGGAACGCCATTGATCGCCACCCTTCAACTGGGGCAATTGCAATCCAAGCTCACCTTACGT
GCCAGCGTCAGTGATGCAGAATCGATGCTGCCCGTAGCCTATATCAAAGAGCGCACCCGCGATGGGCGTCTGATTCTGGA
TGATAACTTCCTGCCACCCATGTTGGATTTTCGCGCCATAGGGTGGATCGATAATGCGGTAACCGAATTGCTAGGGTTGA
TCGTTCAGCGACTGGAATCGGTTTACCGGCCAGATGTGACGCTCTCAGTCGGTGGGTTATCGGAGTTACTGGAACTGCTA
TTACTGCAAACACTCAGTGAATATAACCTAAAGATTTCACATGTGTTGATGCAAAAACAGGTACACCCTGAGCAGTTGTT
CCAATTATTGCTTGGGTTGTTGGGGCGTCTCAGTACTATCCCTGGCGGAGAAAAACCGTGGTCGAGGCAGGATCTGCTCT
ATACGCATCATGAACCGCACAACGGGTATTTCTCGCTGTTTGCCGCCTTACGGCGCGCACTCTCACTGGTGATCGAAGCA
CCGGCAGTGGCGCTACCGTTTATCGAACGTGGCGACAATATTTACCTGTGCCAGAACGATTCACAACTGCGTCTGGAAAA
ACTGATCTTCACCGTCAGTTCCAAACTGCCTTCCGAGACCATTCGCACTTACTTCCCGGCGCAAACCAAACTGGGGCCGG
TGGAGAAAATTGTACAGTTGATCGACCTGCAATTGCCTGGCGCACGGATGATCCCGATGTCATCACCGCCAAGATATATT
CCTTATTACCCGAATAGCGTCTATTTCGAAGTTGACCATGATGATCCTATGTATAAAGAAATGATGTCTGGTTCAGCTAT
CGCACTCAGCATCGTGGGTGATTTCCCTGAGTTGCGTTTTGAAGTATGGGGCTTGCGACAAGGAAGGCTCGGATGA

Upstream 100 bases:

>100_bases
GACTGGCAAGTGTCAATAGACTGGCAAGTGTCAACAGACTGGAAAGCGTCAATAGACTAAAAAGTTTCAACAGACTAAAA
AGTTGCAAAGGACTCATAAT

Downstream 100 bases:

>100_bases
ACGAATTTGAACGCCAGATCCGTGCAGCCATTTCCGCAGCACGCAATGGCGCAAAACATGCGGAACAGTCACTGACTACA
CCAATGTGGCAAGCCAAAAG

Product: type VI secretion protein

Products: NA

Alternate protein names: Type VI Secretion Protein Family; Protein ImpJ/VasE; Replication/Virulence Associated Protein; Protein ImpJ; Type VI Secretion System Protein ImpJ; Type VI Secretion; Type VI Secretion System Core Protein; T6ss M; Conserved Protein; Type VI Secretion Protein VasE; Temperature-Dependent Protein Secretion ImpJ

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MLPKQRVAWVEGMLMEPQHFQQQERYLEHLTEMRARSLSALAWGFHSLSINQGLLDQGKIALNQASGVFPDGTPFHMAGD
EPLPLPFDPGENCQGSVVCLSVLMDIPGNTYIDLKKSNQGSRFVALDAEVQDRNHGVAAEGTPLIATLQLGQLQSKLTLR
ASVSDAESMLPVAYIKERTRDGRLILDDNFLPPMLDFRAIGWIDNAVTELLGLIVQRLESVYRPDVTLSVGGLSELLELL
LLQTLSEYNLKISHVLMQKQVHPEQLFQLLLGLLGRLSTIPGGEKPWSRQDLLYTHHEPHNGYFSLFAALRRALSLVIEA
PAVALPFIERGDNIYLCQNDSQLRLEKLIFTVSSKLPSETIRTYFPAQTKLGPVEKIVQLIDLQLPGARMIPMSSPPRYI
PYYPNSVYFEVDHDDPMYKEMMSGSAIALSIVGDFPELRFEVWGLRQGRLG

Sequences:

>Translated_451_residues
MLPKQRVAWVEGMLMEPQHFQQQERYLEHLTEMRARSLSALAWGFHSLSINQGLLDQGKIALNQASGVFPDGTPFHMAGD
EPLPLPFDPGENCQGSVVCLSVLMDIPGNTYIDLKKSNQGSRFVALDAEVQDRNHGVAAEGTPLIATLQLGQLQSKLTLR
ASVSDAESMLPVAYIKERTRDGRLILDDNFLPPMLDFRAIGWIDNAVTELLGLIVQRLESVYRPDVTLSVGGLSELLELL
LLQTLSEYNLKISHVLMQKQVHPEQLFQLLLGLLGRLSTIPGGEKPWSRQDLLYTHHEPHNGYFSLFAALRRALSLVIEA
PAVALPFIERGDNIYLCQNDSQLRLEKLIFTVSSKLPSETIRTYFPAQTKLGPVEKIVQLIDLQLPGARMIPMSSPPRYI
PYYPNSVYFEVDHDDPMYKEMMSGSAIALSIVGDFPELRFEVWGLRQGRLG
>Mature_451_residues
MLPKQRVAWVEGMLMEPQHFQQQERYLEHLTEMRARSLSALAWGFHSLSINQGLLDQGKIALNQASGVFPDGTPFHMAGD
EPLPLPFDPGENCQGSVVCLSVLMDIPGNTYIDLKKSNQGSRFVALDAEVQDRNHGVAAEGTPLIATLQLGQLQSKLTLR
ASVSDAESMLPVAYIKERTRDGRLILDDNFLPPMLDFRAIGWIDNAVTELLGLIVQRLESVYRPDVTLSVGGLSELLELL
LLQTLSEYNLKISHVLMQKQVHPEQLFQLLLGLLGRLSTIPGGEKPWSRQDLLYTHHEPHNGYFSLFAALRRALSLVIEA
PAVALPFIERGDNIYLCQNDSQLRLEKLIFTVSSKLPSETIRTYFPAQTKLGPVEKIVQLIDLQLPGARMIPMSSPPRYI
PYYPNSVYFEVDHDDPMYKEMMSGSAIALSIVGDFPELRFEVWGLRQGRLG

Specific function: Unknown

COG id: COG3522

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50542; Mature: 50542

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPKQRVAWVEGMLMEPQHFQQQERYLEHLTEMRARSLSALAWGFHSLSINQGLLDQGKI
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCE
ALNQASGVFPDGTPFHMAGDEPLPLPFDPGENCQGSVVCLSVLMDIPGNTYIDLKKSNQG
EEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCC
SRFVALDAEVQDRNHGVAAEGTPLIATLQLGQLQSKLTLRASVSDAESMLPVAYIKERTR
CEEEEEECEECCCCCCCCCCCCCEEEEEEHHHHHHHEEEEEECCCHHHHCHHHHHHHCCC
DGRLILDDNFLPPMLDFRAIGWIDNAVTELLGLIVQRLESVYRPDVTLSVGGLSELLELL
CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHH
LLQTLSEYNLKISHVLMQKQVHPEQLFQLLLGLLGRLSTIPGGEKPWSRQDLLYTHHEPH
HHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCC
NGYFSLFAALRRALSLVIEAPAVALPFIERGDNIYLCQNDSQLRLEKLIFTVSSKLPSET
CHHHHHHHHHHHHHHHHHCCCHHCCHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHH
IRTYFPAQTKLGPVEKIVQLIDLQLPGARMIPMSSPPRYIPYYPNSVYFEVDHDDPMYKE
HHHHCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCHHHHH
MMSGSAIALSIVGDFPELRFEVWGLRQGRLG
HHCCCEEEEEEECCCCHHHEEEECCCCCCCC
>Mature Secondary Structure
MLPKQRVAWVEGMLMEPQHFQQQERYLEHLTEMRARSLSALAWGFHSLSINQGLLDQGKI
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCE
ALNQASGVFPDGTPFHMAGDEPLPLPFDPGENCQGSVVCLSVLMDIPGNTYIDLKKSNQG
EEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCC
SRFVALDAEVQDRNHGVAAEGTPLIATLQLGQLQSKLTLRASVSDAESMLPVAYIKERTR
CEEEEEECEECCCCCCCCCCCCCEEEEEEHHHHHHHEEEEEECCCHHHHCHHHHHHHCCC
DGRLILDDNFLPPMLDFRAIGWIDNAVTELLGLIVQRLESVYRPDVTLSVGGLSELLELL
CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHH
LLQTLSEYNLKISHVLMQKQVHPEQLFQLLLGLLGRLSTIPGGEKPWSRQDLLYTHHEPH
HHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCC
NGYFSLFAALRRALSLVIEAPAVALPFIERGDNIYLCQNDSQLRLEKLIFTVSSKLPSET
CHHHHHHHHHHHHHHHHHCCCHHCCHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHH
IRTYFPAQTKLGPVEKIVQLIDLQLPGARMIPMSSPPRYIPYYPNSVYFEVDHDDPMYKE
HHHHCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCHHHHH
MMSGSAIALSIVGDFPELRFEVWGLRQGRLG
HHCCCEEEEEEECCCCHHHEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA