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The map label for this gene is nlpD [H]

Identifier: 170025641

GI number: 170025641

Start: 3760292

End: 3761275

Strand: Reverse

Name: nlpD [H]

Synonym: YPK_3426

Alternate gene names: 170025641

Gene position: 3761275-3760292 (Counterclockwise)

Preceding gene: 170025642

Following gene: 170025640

Centisome position: 80.21

GC content: 48.37

Gene sequence:

>984_bases
ATGATTAGATTACGCCGAGTCGCGGCATGTACGGTTGTGAGTTTGTGGTTAGTCGGTTGTACCAATGATAATTCAACATC
TGCACCCATCAGCAGTGTGGGGGGCGATCGTTCAGGGACGATGTTGAGTGGAGCGAAAACCGATAGCTCTGGGGGGCGCA
TAGTTTATAACCGCAGTTACGACAATATCCCCAAAGGAAGCTACAGTGGTAATACCTATACCGTTAAGCGTGGTGACACG
CTGTTTTATATCGCTTGGATAACAGGAAATGACTTCCGTGATTTGGCGGCAAAAAATAATATTGCAGAACCCTATAGCCT
GAATGTGGGGCAATCTATTCAATTGGGTAATGGGTCTGGTGGCGGTATGTTAGCCGCCACTGATGCCACATCAGGCGGAA
TAGCACAACCGCCGTCAAATATTCAGAACACAACTCCTATTCAGAACACAACTACAACGGTTGATTCTCAATCAACTAGC
GCGTATTCTGGAAACTCGGGTAAACAGAATGTTGGCAAAATGTTGCCATCATCTGGTGCGGTTGTCGCTACAACAGCACC
TGTTACCGCACCAAGCAGTTCTATCAGTGAACCAGCCAGCAATGGTGGTCCAGTTAGTGGCTGGAGATGGCCAACCGATG
GTAAAACGATCGATAGCTTCTCTGCTTCCGAAGGGGGCAATAAAGGGATTGATATCGCCGGTTCTCGTGGGCAACCTATC
CTCGCCACAGCAAGTGGCCGGGTTGTGTATGCTGGGAACGCACTGCGTGGTTACGGTAATCTAATCATCATCAAACACAA
TGATGATTACCTGAGCGCCTACGCTCATAACGATACAATGCTGGTCCGGGAACAACAAGAAGTGAAGGCGGGTCAAAAAA
TAGCAACCATGGGTAGCACCGGAACCAGTTCAGTTAGATTGCATTTTGAAATTCGTTACAAGGGGAAATCCGTAAACCCG
CTGCGTTACCTTCCGCAGCGATAG

Upstream 100 bases:

>100_bases
CTCTTCTATTTCAGCCTTCACCTTTAGCTACCGTGTAAAGGTATTTGGACATATCGTTTATTATTGCTGTCATGGGGGAA
GCATGAGCACAGGAAGCCCA

Downstream 100 bases:

>100_bases
ATTGGGCAGAATACGCTGTATTCTGCTCGCCGGATTCACGGGTAGGAGCAGCATATGAGCCAAAGTACGCTGAAAGTTAA
CGAGTTGCATGAAGATGCTG

Product: lipoprotein NlpD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MIRLRRVAACTVVSLWLVGCTNDNSTSAPISSVGGDRSGTMLSGAKTDSSGGRIVYNRSYDNIPKGSYSGNTYTVKRGDT
LFYIAWITGNDFRDLAAKNNIAEPYSLNVGQSIQLGNGSGGGMLAATDATSGGIAQPPSNIQNTTPIQNTTTTVDSQSTS
AYSGNSGKQNVGKMLPSSGAVVATTAPVTAPSSSISEPASNGGPVSGWRWPTDGKTIDSFSASEGGNKGIDIAGSRGQPI
LATASGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSVRLHFEIRYKGKSVNP
LRYLPQR

Sequences:

>Translated_327_residues
MIRLRRVAACTVVSLWLVGCTNDNSTSAPISSVGGDRSGTMLSGAKTDSSGGRIVYNRSYDNIPKGSYSGNTYTVKRGDT
LFYIAWITGNDFRDLAAKNNIAEPYSLNVGQSIQLGNGSGGGMLAATDATSGGIAQPPSNIQNTTPIQNTTTTVDSQSTS
AYSGNSGKQNVGKMLPSSGAVVATTAPVTAPSSSISEPASNGGPVSGWRWPTDGKTIDSFSASEGGNKGIDIAGSRGQPI
LATASGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSVRLHFEIRYKGKSVNP
LRYLPQR
>Mature_327_residues
MIRLRRVAACTVVSLWLVGCTNDNSTSAPISSVGGDRSGTMLSGAKTDSSGGRIVYNRSYDNIPKGSYSGNTYTVKRGDT
LFYIAWITGNDFRDLAAKNNIAEPYSLNVGQSIQLGNGSGGGMLAATDATSGGIAQPPSNIQNTTPIQNTTTTVDSQSTS
AYSGNSGKQNVGKMLPSSGAVVATTAPVTAPSSSISEPASNGGPVSGWRWPTDGKTIDSFSASEGGNKGIDIAGSRGQPI
LATASGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSVRLHFEIRYKGKSVNP
LRYLPQR

Specific function: May be involved in stationary-phase survival [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=378, Percent_Identity=55.8201058201058, Blast_Score=383, Evalue=1e-108,
Organism=Escherichia coli, GI87082174, Length=262, Percent_Identity=46.1832061068702, Blast_Score=216, Evalue=2e-57,
Organism=Escherichia coli, GI87082297, Length=145, Percent_Identity=35.1724137931034, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI87081989, Length=96, Percent_Identity=36.4583333333333, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 34187; Mature: 34187

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLRRVAACTVVSLWLVGCTNDNSTSAPISSVGGDRSGTMLSGAKTDSSGGRIVYNRSY
CCEEHHHHHHHEEEEEEEEECCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCEEEEECCC
DNIPKGSYSGNTYTVKRGDTLFYIAWITGNDFRDLAAKNNIAEPYSLNVGQSIQLGNGSG
CCCCCCCCCCCEEEEECCCEEEEEEEEECCCHHHHHHCCCCCCCEEECCCCEEEECCCCC
GGMLAATDATSGGIAQPPSNIQNTTPIQNTTTTVDSQSTSAYSGNSGKQNVGKMLPSSGA
CCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCC
VVATTAPVTAPSSSISEPASNGGPVSGWRWPTDGKTIDSFSASEGGNKGIDIAGSRGQPI
EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEECCCCCEE
LATASGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGST
EEECCCCEEEECCCCCCCCCEEEEEECCCEEEEEECCCEEEEECHHHHHCCCEEEEECCC
GTSSVRLHFEIRYKGKSVNPLRYLPQR
CCCEEEEEEEEEECCCCCCHHHCCCCC
>Mature Secondary Structure
MIRLRRVAACTVVSLWLVGCTNDNSTSAPISSVGGDRSGTMLSGAKTDSSGGRIVYNRSY
CCEEHHHHHHHEEEEEEEEECCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCEEEEECCC
DNIPKGSYSGNTYTVKRGDTLFYIAWITGNDFRDLAAKNNIAEPYSLNVGQSIQLGNGSG
CCCCCCCCCCCEEEEECCCEEEEEEEEECCCHHHHHHCCCCCCCEEECCCCEEEECCCCC
GGMLAATDATSGGIAQPPSNIQNTTPIQNTTTTVDSQSTSAYSGNSGKQNVGKMLPSSGA
CCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCC
VVATTAPVTAPSSSISEPASNGGPVSGWRWPTDGKTIDSFSASEGGNKGIDIAGSRGQPI
EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEECCCCCEE
LATASGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGST
EEECCCCEEEECCCCCCCCCEEEEEECCCEEEEEECCCEEEEECHHHHHCCCEEEEECCC
GTSSVRLHFEIRYKGKSVNPLRYLPQR
CCCEEEEEEEEEECCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973354 [H]