Click here to switch to the map view.

The map label for this gene is hcpA [H]

Identifier: 170025281

GI number: 170025281

Start: 3366134

End: 3366613

Strand: Reverse

Name: hcpA [H]

Synonym: YPK_3060

Alternate gene names: 170025281

Gene position: 3366613-3366134 (Counterclockwise)

Preceding gene: 170025282

Following gene: 170025276

Centisome position: 71.79

GC content: 35.62

Gene sequence:

>480_bases
ATGTCTAATTTGATTTATGCAAGTGTTAATGGTAAAAAACAAGGTTTAATATCTGCCGGATGCTCGTCACTCAACTCTAT
TGGTAATCGGTGCCAGGCAGGTCATGAAGATCAAATACAGGTATTAAGTTTAAATCATAGTATAAGCCGCCAACAGAATG
TAGCTCATCACCCTGTTCATTTTGTTAAGCCTATAGATAAGTCATCTCCATTGCTAGGCGTGGCAATATCTGAAAATGAA
CGAATAGATGTTGTCTTTTATTTTTATAGAGTAAATTCTGCTGGGCAGTTGGAACTTTATTATGAAGTTAAACTGACAGA
TGCGAGTATTGTAGATATCACCAGTGTTTATCCACACTCAATAGATAATAATGAAATGATACCGTATGAAAAAATTCAAT
TAAAATATAAATCCATAGCGTGGGATCACAAAAGTGCGGGTACTTCTGGTTACAGTGTATGGGAAGATAGGGTTTACTAG

Upstream 100 bases:

>100_bases
TCATTGATTCTGCTGGAGAGGATTATCGGTTTATACTCAGGCTTGAAGTGCCACCAATTTTGGAACGACAGCACTAACCT
CTATTACATAAGGAATTGTC

Downstream 100 bases:

>100_bases
TTTCTGATATCAAGCACACTTTTTCAAGTGTGCTTGAACATATTTATATTCTTCAATTGGCTTGTTTACCAAAATTATTT
TTGGGAGAAGTAAGAGGCGG

Product: Hcp1 family type VI secretion system effector

Products: NA

Alternate protein names: Secreted protein hcp [H]

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MSNLIYASVNGKKQGLISAGCSSLNSIGNRCQAGHEDQIQVLSLNHSISRQQNVAHHPVHFVKPIDKSSPLLGVAISENE
RIDVVFYFYRVNSAGQLELYYEVKLTDASIVDITSVYPHSIDNNEMIPYEKIQLKYKSIAWDHKSAGTSGYSVWEDRVY

Sequences:

>Translated_159_residues
MSNLIYASVNGKKQGLISAGCSSLNSIGNRCQAGHEDQIQVLSLNHSISRQQNVAHHPVHFVKPIDKSSPLLGVAISENE
RIDVVFYFYRVNSAGQLELYYEVKLTDASIVDITSVYPHSIDNNEMIPYEKIQLKYKSIAWDHKSAGTSGYSVWEDRVY
>Mature_158_residues
SNLIYASVNGKKQGLISAGCSSLNSIGNRCQAGHEDQIQVLSLNHSISRQQNVAHHPVHFVKPIDKSSPLLGVAISENER
IDVVFYFYRVNSAGQLELYYEVKLTDASIVDITSVYPHSIDNNEMIPYEKIQLKYKSIAWDHKSAGTSGYSVWEDRVY

Specific function: Unknown

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hcp1 family [H]

Homologues:

Organism=Escherichia coli, GI1789850, Length=149, Percent_Identity=40.9395973154362, Blast_Score=101, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017728
- InterPro:   IPR008514 [H]

Pfam domain/function: PF05638 DUF796 [H]

EC number: NA

Molecular weight: Translated: 17847; Mature: 17716

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNLIYASVNGKKQGLISAGCSSLNSIGNRCQAGHEDQIQVLSLNHSISRQQNVAHHPVH
CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEE
FVKPIDKSSPLLGVAISENERIDVVFYFYRVNSAGQLELYYEVKLTDASIVDITSVYPHS
EECCCCCCCCEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEEEECCCEEEEEEECCCCC
IDNNEMIPYEKIQLKYKSIAWDHKSAGTSGYSVWEDRVY
CCCCCCCCHHHEEEEEEHEEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SNLIYASVNGKKQGLISAGCSSLNSIGNRCQAGHEDQIQVLSLNHSISRQQNVAHHPVH
CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEE
FVKPIDKSSPLLGVAISENERIDVVFYFYRVNSAGQLELYYEVKLTDASIVDITSVYPHS
EECCCCCCCCEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEEEECCCEEEEEEECCCCC
IDNNEMIPYEKIQLKYKSIAWDHKSAGTSGYSVWEDRVY
CCCCCCCCHHHEEEEEEHEEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]