Click here to switch to the map view.

The map label for this gene is ybgC [H]

Identifier: 170025182

GI number: 170025182

Start: 3258156

End: 3258557

Strand: Reverse

Name: ybgC [H]

Synonym: YPK_2960

Alternate gene names: 170025182

Gene position: 3258557-3258156 (Counterclockwise)

Preceding gene: 170025183

Following gene: 170025181

Centisome position: 69.49

GC content: 47.26

Gene sequence:

>402_bases
GTGAGTAATACGTTATTTCGATGGCCGGTACGAGTCTACTTTGAAGATACCGATGCTGGTGGCATGGTTTACCATGCGCG
CTACGTTGCCTTTTATGAAAGGGCGCGAACTGAAATGTTGCGCCAACGAAATTTTCATCAGCAACAATTGCTCAGTGAGC
ATGTTGCTTTTGCTGTCCGCAGCATGACGGTAGAATACCTGGCTCCTGCACGTCTTGATGATATGCTGGAGGTTCAGAGT
GAAGTTACCGCTATGCGTGGTGCCTCTCTCACGTTTGCTCAACGAATTCTCGACTCACATGGCAATCTTCTGAGTAGTGC
AGAAGTATTGATCGCATGTATCGATCCACATCAAATGAAGCCAAGAGCGCTTCCTAAGTCTATTGTCGCGGAGTTTAAGT
AG

Upstream 100 bases:

>100_bases
ATCCGGCCCATAATTATTTTCGTTCTATTCTCGCAAGTGATTCCAAAGCTCAACGCTCTTCAGTATAGTGTGTTCGTTAA
TTGCATTACTGGGAAGTAGA

Downstream 100 bases:

>100_bases
TGGCTGACATGAACATTCTGGATTTATTCCTGCAGGCAAGCCTATTCGTTAAGCTTATCATGCTGGTTCTGATGGGCTTT
TCTATTGCGTCATGGGCTAT

Product: acyl-CoA thioester hydrolase YbgC

Products: NA

Alternate protein names: Acyl-CoA thioesterase [H]

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MSNTLFRWPVRVYFEDTDAGGMVYHARYVAFYERARTEMLRQRNFHQQQLLSEHVAFAVRSMTVEYLAPARLDDMLEVQS
EVTAMRGASLTFAQRILDSHGNLLSSAEVLIACIDPHQMKPRALPKSIVAEFK

Sequences:

>Translated_133_residues
MSNTLFRWPVRVYFEDTDAGGMVYHARYVAFYERARTEMLRQRNFHQQQLLSEHVAFAVRSMTVEYLAPARLDDMLEVQS
EVTAMRGASLTFAQRILDSHGNLLSSAEVLIACIDPHQMKPRALPKSIVAEFK
>Mature_132_residues
SNTLFRWPVRVYFEDTDAGGMVYHARYVAFYERARTEMLRQRNFHQQQLLSEHVAFAVRSMTVEYLAPARLDDMLEVQSE
VTAMRGASLTFAQRILDSHGNLLSSAEVLIACIDPHQMKPRALPKSIVAEFK

Specific function: Thioesterase that appears to be involved in phospholipid metabolism. Some specific acyl-ACPs could be physiological substrates. Displays acyl-CoA thioesterase activity on malonyl-CoA in vitro, catalyzing the hydrolysis of the thioester bond [H]

COG id: COG0824

COG function: function code R; Predicted thioesterase

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 4-hydroxybenzoyl-CoA thioesterase family [H]

Homologues:

Organism=Escherichia coli, GI1786957, Length=133, Percent_Identity=72.9323308270677, Blast_Score=214, Evalue=1e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006684
- InterPro:   IPR008272
- InterPro:   IPR006683
- InterPro:   IPR014166 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: NA

Molecular weight: Translated: 15293; Mature: 15162

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNTLFRWPVRVYFEDTDAGGMVYHARYVAFYERARTEMLRQRNFHQQQLLSEHVAFAVR
CCCCEEECEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
SMTVEYLAPARLDDMLEVQSEVTAMRGASLTFAQRILDSHGNLLSSAEVLIACIDPHQMK
HHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHCCCCEEEEECCCCCCC
PRALPKSIVAEFK
CCCCCHHHHHCCC
>Mature Secondary Structure 
SNTLFRWPVRVYFEDTDAGGMVYHARYVAFYERARTEMLRQRNFHQQQLLSEHVAFAVR
CCCEEECEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
SMTVEYLAPARLDDMLEVQSEVTAMRGASLTFAQRILDSHGNLLSSAEVLIACIDPHQMK
HHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHCCCCEEEEECCCCCCC
PRALPKSIVAEFK
CCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]