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The map label for this gene is pal [H]

Identifier: 170025177

GI number: 170025177

Start: 3253782

End: 3254288

Strand: Reverse

Name: pal [H]

Synonym: YPK_2955

Alternate gene names: 170025177

Gene position: 3254288-3253782 (Counterclockwise)

Preceding gene: 170025178

Following gene: 170025176

Centisome position: 69.4

GC content: 47.93

Gene sequence:

>507_bases
ATGCAACTGAACAAAGTGCTAAAAGGGCTAATGTTGGCTTTGCCTGTTCTGGCTGTGGCGGCTTGTAGTTCCAACAAAAG
CGCAAATAATGACCAATCTGGCATGGGCGCTGGCACTGGTACAGAGAACGGCAGCAACCTGTCTTCTGAAGAGCAAGCAC
GTCTTCAGATGCAAGAACTGCAAAAGAACAACATCGTTTACTTCGGTTTCGATAAATACGATATCGGTTCTGACTTCGCT
CAAATGCTGGATGCACATGCTGCATTCCTGCGTAGCAACCCATCTTACAAAGTTGTTGTTGAAGGCCACGCGGATGAACG
CGGTACGCCAGAATACAACATCGCTTTGGGTGAGCGTCGTGCTAGCGCAGTGAAAATGTACCTGCAAGGTAAAGGCGTTT
CTGCTGACCAGATCTCTATCGTTTCTTACGGTAAAGAGAAACCAGCAGTACTGGGCCATGACGAAGCAGCCTTTGCTAAA
AACCGTCGTGCAGTTCTGGTTTACTAA

Upstream 100 bases:

>100_bases
CGGCAACTGATGGACAGGTCAAATTTCCTGCCTGGTCGCCGTATCTGTGATGCATGTGTAAATACGTATGTATGGCAAAC
TATAAAAAAGGATCAAAGAG

Downstream 100 bases:

>100_bases
GAGAATCGCATGAACAGTAACTTCAGACGTCACTTAGTGGGTCTGTCGTTACTGGTTGGCGTAGCGGTCCCATGGGCCGC
TACTGCCCAAGCGCCAATCA

Product: peptidoglycan-associated outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MQLNKVLKGLMLALPVLAVAACSSNKSANNDQSGMGAGTGTENGSNLSSEEQARLQMQELQKNNIVYFGFDKYDIGSDFA
QMLDAHAAFLRSNPSYKVVVEGHADERGTPEYNIALGERRASAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAFAK
NRRAVLVY

Sequences:

>Translated_168_residues
MQLNKVLKGLMLALPVLAVAACSSNKSANNDQSGMGAGTGTENGSNLSSEEQARLQMQELQKNNIVYFGFDKYDIGSDFA
QMLDAHAAFLRSNPSYKVVVEGHADERGTPEYNIALGERRASAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAFAK
NRRAVLVY
>Mature_168_residues
MQLNKVLKGLMLALPVLAVAACSSNKSANNDQSGMGAGTGTENGSNLSSEEQARLQMQELQKNNIVYFGFDKYDIGSDFA
QMLDAHAAFLRSNPSYKVVVEGHADERGTPEYNIALGERRASAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAFAK
NRRAVLVY

Specific function: Thought to play a role in bacterial envelope integrity. Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=173, Percent_Identity=84.9710982658959, Blast_Score=268, Evalue=2e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 18133; Mature: 18133

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLNKVLKGLMLALPVLAVAACSSNKSANNDQSGMGAGTGTENGSNLSSEEQARLQMQEL
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
QKNNIVYFGFDKYDIGSDFAQMLDAHAAFLRSNPSYKVVVEGHADERGTPEYNIALGERR
HHCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEECCHH
ASAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAFAKNRRAVLVY
HHHEEEEECCCCCCCCEEEEEECCCCCCCEECCCHHHHHCCCCEEEEC
>Mature Secondary Structure
MQLNKVLKGLMLALPVLAVAACSSNKSANNDQSGMGAGTGTENGSNLSSEEQARLQMQEL
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
QKNNIVYFGFDKYDIGSDFAQMLDAHAAFLRSNPSYKVVVEGHADERGTPEYNIALGERR
HHCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEECCHH
ASAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAFAKNRRAVLVY
HHHEEEEECCCCCCCCEEEEEECCCCCCCEECCCHHHHHCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]