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The map label for this gene is ybgF [H]

Identifier: 170025176

GI number: 170025176

Start: 3252963

End: 3253772

Strand: Reverse

Name: ybgF [H]

Synonym: YPK_2954

Alternate gene names: 170025176

Gene position: 3253772-3252963 (Counterclockwise)

Preceding gene: 170025177

Following gene: 170025175

Centisome position: 69.39

GC content: 47.28

Gene sequence:

>810_bases
ATGAACAGTAACTTCAGACGTCACTTAGTGGGTCTGTCGTTACTGGTTGGCGTAGCGGTCCCATGGGCCGCTACTGCCCA
AGCGCCAATCAGTAATGTCGGCTCCGGCTCGGTAGAAGATCGGGTCACTCAACTTGAGCGTATTTCCAACGCTCACAGCC
AACTATTAACTCAACTTCAGCAACAACTGTCAGATTCGCAACGCGATGTTGATAGTTTACGCGGTCAGATCCAAGAAAGT
CAGTACCAGCTCAATCAAGTTGTTGAGCGGCAGAAACAGATCTACCAACAGATGGAGAGTCTGAGCGGTGGCCAAGGGGC
GCAGAATTCAGCTTCTGCGGCGAGTGGTGCAACAGCAGACAATACAGCGGCTGGAAGTTCCGGTAATGCCGACGCAGGCG
CAGCAGCTTCTACAGCGGCACCAGCAGCAAGTACTGGTGATGAAAACAGCGATTACAATGTGGCTGTCTCTCTGGCTCTT
GAGAAAAAGCAATATGATCAAGCGATCACTGCTTTTCAGAGTTTTGTGAAACAGTATCCAAAATCGACTTACCAGCCCAA
TGCCAACTATTGGTTAGGGCAGTTGTATTACAACAAAGGTAAGAAAGATGATGCTGCATATTATTATGCTGTTGTCGTAA
AAAATTATCCAAAATCCCCAAAAAGTTCAGAAGCCATGTTTAAAGTTGGGGTGATCATGCAGGATAAAGGCCAAAGCGAT
AAAGCGAAGGCGGTTTATCAGCAAGTGATCAAGCAATATCCCAATACCGATGCGGCTAAACAGGCACAGAAACGTTTATC
TGCTCTTTAG

Upstream 100 bases:

>100_bases
TATCGTTTCTTACGGTAAAGAGAAACCAGCAGTACTGGGCCATGACGAAGCAGCCTTTGCTAAAAACCGTCGTGCAGTTC
TGGTTTACTAAGAGAATCGC

Downstream 100 bases:

>100_bases
CTTTTTTGAGCCCAGGATTTAGTCAATTTGACTGATTTCTGGGCTTTATCGTGTGAAGAACAAGCAGTTAAACATTTCAG
TAGAAATTTAAGTTGCACTG

Product: tol-pal system protein YbgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MNSNFRRHLVGLSLLVGVAVPWAATAQAPISNVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDSQRDVDSLRGQIQES
QYQLNQVVERQKQIYQQMESLSGGQGAQNSASAASGATADNTAAGSSGNADAGAAASTAAPAASTGDENSDYNVAVSLAL
EKKQYDQAITAFQSFVKQYPKSTYQPNANYWLGQLYYNKGKKDDAAYYYAVVVKNYPKSPKSSEAMFKVGVIMQDKGQSD
KAKAVYQQVIKQYPNTDAAKQAQKRLSAL

Sequences:

>Translated_269_residues
MNSNFRRHLVGLSLLVGVAVPWAATAQAPISNVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDSQRDVDSLRGQIQES
QYQLNQVVERQKQIYQQMESLSGGQGAQNSASAASGATADNTAAGSSGNADAGAAASTAAPAASTGDENSDYNVAVSLAL
EKKQYDQAITAFQSFVKQYPKSTYQPNANYWLGQLYYNKGKKDDAAYYYAVVVKNYPKSPKSSEAMFKVGVIMQDKGQSD
KAKAVYQQVIKQYPNTDAAKQAQKRLSAL
>Mature_269_residues
MNSNFRRHLVGLSLLVGVAVPWAATAQAPISNVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDSQRDVDSLRGQIQES
QYQLNQVVERQKQIYQQMESLSGGQGAQNSASAASGATADNTAAGSSGNADAGAAASTAAPAASTGDENSDYNVAVSLAL
EKKQYDQAITAFQSFVKQYPKSTYQPNANYWLGQLYYNKGKKDDAAYYYAVVVKNYPKSPKSSEAMFKVGVIMQDKGQSD
KAKAVYQQVIKQYPNTDAAKQAQKRLSAL

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786963, Length=270, Percent_Identity=70.3703703703704, Blast_Score=335, Evalue=3e-93,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29034; Mature: 29034

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSNFRRHLVGLSLLVGVAVPWAATAQAPISNVGSGSVEDRVTQLERISNAHSQLLTQLQ
CCCCHHHHHHHHHHHHHHHCCCHHHCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QQLSDSQRDVDSLRGQIQESQYQLNQVVERQKQIYQQMESLSGGQGAQNSASAASGATAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCC
NTAAGSSGNADAGAAASTAAPAASTGDENSDYNVAVSLALEKKQYDQAITAFQSFVKQYP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHCC
KSTYQPNANYWLGQLYYNKGKKDDAAYYYAVVVKNYPKSPKSSEAMFKVGVIMQDKGQSD
CCCCCCCCCEEHHHHHHCCCCCCCHHEEEEEEEECCCCCCCCCHHHHHHCEEECCCCCCH
KAKAVYQQVIKQYPNTDAAKQAQKRLSAL
HHHHHHHHHHHHCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MNSNFRRHLVGLSLLVGVAVPWAATAQAPISNVGSGSVEDRVTQLERISNAHSQLLTQLQ
CCCCHHHHHHHHHHHHHHHCCCHHHCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QQLSDSQRDVDSLRGQIQESQYQLNQVVERQKQIYQQMESLSGGQGAQNSASAASGATAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCC
NTAAGSSGNADAGAAASTAAPAASTGDENSDYNVAVSLALEKKQYDQAITAFQSFVKQYP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHCC
KSTYQPNANYWLGQLYYNKGKKDDAAYYYAVVVKNYPKSPKSSEAMFKVGVIMQDKGQSD
CCCCCCCCCEEHHHHHHCCCCCCCHHEEEEEEEECCCCCCCCCHHHHHHCEEECCCCCCH
KAKAVYQQVIKQYPNTDAAKQAQKRLSAL
HHHHHHHHHHHHCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1574003; 8905232; 9278503; 7567469 [H]