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The map label for this gene is ompF [H]

Identifier: 170024874

GI number: 170024874

Start: 2911078

End: 2912160

Strand: Direct

Name: ompF [H]

Synonym: YPK_2649

Alternate gene names: 170024874

Gene position: 2911078-2912160 (Clockwise)

Preceding gene: 170024873

Following gene: 170024875

Centisome position: 62.08

GC content: 45.61

Gene sequence:

>1083_bases
ATGATGAAGCGCAATATTCTTGCAGTAGTAATCCCAGCTCTGTTAGCCGCTGGTGCAGCTAATGCAGCAGAAATCTATAA
CAAAGATGGCAACAAACTTGACCTGTACGGTAAAGTTGACGCACGTCACTCTTTCTCCGATAACAACAAACAAGATGGCG
ACAAGTCTTACGTTCGTTTCGGCTTCAAAGGTGAAACCCAAATTACTGACCAACTGACCGGTTACGGCCAGTGGGAATAC
AACATTCAAGCAAACAACGCTGAAGAATCAGGCGCTCAAGAAGGCAACGCAACCCGTCTGGGCTTTGCTGGTCTGAAATT
TGCTGAATTCGGTTCATTCGACTACGGCCGTAACTACGGCGTAATCTATGACGTTAACGCATGGACTGACATGCTGCCAG
TGTTCGGTGGTGATTCAATCTCCAACTCTGACAACTTCATGACTGGCCGTTCTACTGGCCTGGCAACTTATCGTAACAAC
AATTTCTTCGGTCTGGTTGACGGCCTGAACTTTGCCCTGCAATACCAAGGCAAAAATGACCGTTCTGAAGTCAAAGAAGC
TAACGGTGACGGCTTCGGTATCGGTTCTACTTATGATATCGGCAATGGCATTAACTTCGGTGCTGGTTTCTCTTCTTCAA
ACCGTACTCTTGATCAAAAATATGGTTCTACCGCTGAAGGCGACAAAGCTCAGGCATGGAACGTTGGCGCTAAATACGAC
GCAAACAACGTATACCTGGCTGTAATGTATGCTGAAACTCAGAACCTGACTCCATACGGTAGCTTCTCTGATACTATCGC
TAACAAGACTCGCGATATCGAGATCACTGCACAATATCAGTTCGACTTCGGTCTGCGCCCATCACTGGGTTATGTTCAGT
CCAAAGGTAAGGACCTGAACGATGTTGATGCCAACCATGATCTGCTGAAATATGTTTCTGTTGGTACTTACTACTACTTC
AACAAAAACATGTCTACCTATGTTGATTACAAAATCAACTTGCTGGACGAAGATGAGTTCACAATCGCAAACGGTCTGAA
CACCGACAACGTTGTTGCTGTTGGCTTGGTTTACCAGTTCTAA

Upstream 100 bases:

>100_bases
GCGTTCAGACACAGACGACACCAAACTCTCAACAATAGTTCCATAAAAATTATTGGCGGCAGTGGCAGGTGTCCGAATAA
CACCAATGAGGGTAATAATA

Downstream 100 bases:

>100_bases
GTCAAACTTAACGAGGCAGTTTATCTGCTGACCTAAGTTGAAAAAAGACAGGGCCTCGGCTCTGTCTTTTTGTTTCTATT
TTGAGCAGATTGATGGAGAT

Product: porin

Products: NA

Alternate protein names: Porin ompF [H]

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MMKRNILAVVIPALLAAGAANAAEIYNKDGNKLDLYGKVDARHSFSDNNKQDGDKSYVRFGFKGETQITDQLTGYGQWEY
NIQANNAEESGAQEGNATRLGFAGLKFAEFGSFDYGRNYGVIYDVNAWTDMLPVFGGDSISNSDNFMTGRSTGLATYRNN
NFFGLVDGLNFALQYQGKNDRSEVKEANGDGFGIGSTYDIGNGINFGAGFSSSNRTLDQKYGSTAEGDKAQAWNVGAKYD
ANNVYLAVMYAETQNLTPYGSFSDTIANKTRDIEITAQYQFDFGLRPSLGYVQSKGKDLNDVDANHDLLKYVSVGTYYYF
NKNMSTYVDYKINLLDEDEFTIANGLNTDNVVAVGLVYQF

Sequences:

>Translated_360_residues
MMKRNILAVVIPALLAAGAANAAEIYNKDGNKLDLYGKVDARHSFSDNNKQDGDKSYVRFGFKGETQITDQLTGYGQWEY
NIQANNAEESGAQEGNATRLGFAGLKFAEFGSFDYGRNYGVIYDVNAWTDMLPVFGGDSISNSDNFMTGRSTGLATYRNN
NFFGLVDGLNFALQYQGKNDRSEVKEANGDGFGIGSTYDIGNGINFGAGFSSSNRTLDQKYGSTAEGDKAQAWNVGAKYD
ANNVYLAVMYAETQNLTPYGSFSDTIANKTRDIEITAQYQFDFGLRPSLGYVQSKGKDLNDVDANHDLLKYVSVGTYYYF
NKNMSTYVDYKINLLDEDEFTIANGLNTDNVVAVGLVYQF
>Mature_360_residues
MMKRNILAVVIPALLAAGAANAAEIYNKDGNKLDLYGKVDARHSFSDNNKQDGDKSYVRFGFKGETQITDQLTGYGQWEY
NIQANNAEESGAQEGNATRLGFAGLKFAEFGSFDYGRNYGVIYDVNAWTDMLPVFGGDSISNSDNFMTGRSTGLATYRNN
NFFGLVDGLNFALQYQGKNDRSEVKEANGDGFGIGSTYDIGNGINFGAGFSSSNRTLDQKYGSTAEGDKAQAWNVGAKYD
ANNVYLAVMYAETQNLTPYGSFSDTIANKTRDIEITAQYQFDFGLRPSLGYVQSKGKDLNDVDANHDLLKYVSVGTYYYF
NKNMSTYVDYKINLLDEDEFTIANGLNTDNVVAVGLVYQF

Specific function: OmpF is a porin that forms passive diffusion pores which allow small molecular weight hydrophilic materials across the outer membrane. It is also a receptor for the bacteriophage T2 [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1787641, Length=357, Percent_Identity=62.7450980392157, Blast_Score=448, Evalue=1e-127,
Organism=Escherichia coli, GI1788544, Length=374, Percent_Identity=59.8930481283422, Blast_Score=416, Evalue=1e-117,
Organism=Escherichia coli, GI1786436, Length=361, Percent_Identity=58.1717451523546, Blast_Score=414, Evalue=1e-117,
Organism=Escherichia coli, GI1787160, Length=368, Percent_Identity=57.8804347826087, Blast_Score=399, Evalue=1e-112,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 39656; Mature: 39656

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: PS00576 GRAM_NEG_PORIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKRNILAVVIPALLAAGAANAAEIYNKDGNKLDLYGKVDARHSFSDNNKQDGDKSYVRF
CCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEE
GFKGETQITDQLTGYGQWEYNIQANNAEESGAQEGNATRLGFAGLKFAEFGSFDYGRNYG
ECCCCCEEHHHHCCCCEEEEEEEECCCHHCCCCCCCCEEEEECCCCHHHCCCCCCCCCCC
VIYDVNAWTDMLPVFGGDSISNSDNFMTGRSTGLATYRNNNFFGLVDGLNFALQYQGKND
EEEECCCHHHHHHHCCCCCCCCCCCEEECCCCCEEEEECCCEEEEEECCEEEEEECCCCC
RSEVKEANGDGFGIGSTYDIGNGINFGAGFSSSNRTLDQKYGSTAEGDKAQAWNVGAKYD
HHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEEECCCCEEC
ANNVYLAVMYAETQNLTPYGSFSDTIANKTRDIEITAQYQFDFGLRPSLGYVQSKGKDLN
CCCEEEEEEEEECCCCCCCCCCHHHHHCCCEEEEEEEEEEECCCCCCCCCHHHHCCCCCC
DVDANHDLLKYVSVGTYYYFNKNMSTYVDYKINLLDEDEFTIANGLNTDNVVAVGLVYQF
CCCCCCHHHHHEEEEEEEEECCCCCEEEEEEEEEECCCCEEEECCCCCCCEEEEEEEEEC
>Mature Secondary Structure
MMKRNILAVVIPALLAAGAANAAEIYNKDGNKLDLYGKVDARHSFSDNNKQDGDKSYVRF
CCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEE
GFKGETQITDQLTGYGQWEYNIQANNAEESGAQEGNATRLGFAGLKFAEFGSFDYGRNYG
ECCCCCEEHHHHCCCCEEEEEEEECCCHHCCCCCCCCEEEEECCCCHHHCCCCCCCCCCC
VIYDVNAWTDMLPVFGGDSISNSDNFMTGRSTGLATYRNNNFFGLVDGLNFALQYQGKND
EEEECCCHHHHHHHCCCCCCCCCCCEEECCCCCEEEEECCCEEEEEECCEEEEEECCCCC
RSEVKEANGDGFGIGSTYDIGNGINFGAGFSSSNRTLDQKYGSTAEGDKAQAWNVGAKYD
HHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEEECCCCEEC
ANNVYLAVMYAETQNLTPYGSFSDTIANKTRDIEITAQYQFDFGLRPSLGYVQSKGKDLN
CCCEEEEEEEEECCCCCCCCCCHHHHHCCCEEEEEEEEEEECCCCCCCCCHHHHCCCCCC
DVDANHDLLKYVSVGTYYYFNKNMSTYVDYKINLLDEDEFTIANGLNTDNVVAVGLVYQF
CCCCCCHHHHHEEEEEEEEECCCCCEEEEEEEEEECCCCEEEECCCCCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9274033 [H]