| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is flgK [H]
Identifier: 170024641
GI number: 170024641
Start: 2648357
End: 2650021
Strand: Reverse
Name: flgK [H]
Synonym: YPK_2416
Alternate gene names: 170024641
Gene position: 2650021-2648357 (Counterclockwise)
Preceding gene: 170024642
Following gene: 170024640
Centisome position: 56.51
GC content: 50.03
Gene sequence:
>1665_bases ATGTCCAATAGTTTAATGAATACGGCAATGAGTGGTTTGAACGCAGCGCAATATGCCCTGAGCACCGTCAGTAACAACAT CACCAACTTTCAAGTAGCCGGTTATAACCGCCAGAACACGGTCTTTGCCCAAAATGGTGGCACCATTACCTCTGCCGGTT TTATTGGTAACGGGGTAACGGTCACCGGGGTTAATCGCGAATATAACGCTTTTATTACCAACCAACTGCGCGCCTCTCAG ACACAAAGCAGTGGCTTGGCCACCTATTATCAGCAAATTTCGCAAATCGACAATCTGTTGTCGAACGCCTCGAATAATCT CTCCACCACCATGCAGGATTTCTTCAGCAACCTACAAAACCTGGTCAGTAATGCTGATGACGATGCTGCGCGCAAAACCG TATTGGGTAAAGCCGAGGGGTTAGTGAACCAATTCCAGAACGCAGATAAATATCTGCGGGATATGGATGACGGCGTTAAC CAAAAAATTACCGACAGCGCGACGCAAATTAATAACTATGCCGAACAAATCGCTAAGTTAAACGACCAGATCACCCGTCT GCGGGGCAGCAGCGGTAGCGAGCCCAATGCCTTGCTCGACCAACGTGACCAACTGGTGACAGAGTTGAACCAGATTATGG CGGTTACGGTCACCCAGCAAGATGGCGATGCTTATAACGTCTCGTTTGCTGGTGGCTTGTCGCTGGTACAAGGACCGAAT GCCTATAAAGTGGAAGCTATTCCCTCCAGTGCGGATGCGACGCGCTTAACTCTGGGCTACAAACGGGGTAACGGCGAGGC AACGGAGGTAGATGAGAGCCGTATTACTACCGGGTCGCTTGGCGGCACCTTGAAATTCCGCAGTGAAGCACTGGACAGCG CCCGTAACCAGCTAGGTCAGTTGGCGTTAGTTATGGCTGATAGCTTCAATACGCAGCACAACGCCGGGTTTGATATCAAT GGTGATGAGGGGGAGGACTTCTTTAGTTTCGCCGACCCTACCGTGCTGAAAAATGCCAAAAATCAGGGTAATGCCAGCAT CACGGTGGAATATAAAGACACATCGAAAGTGAAAGCCAGTGATTACACCGTAGAATTTGATGGTACTGATTGGCAGGTGA CCCGTCTGTCCGATAATACCAAAGTGCAAACGACGCCCGGAGTGAATGCTGACGGTGATCCTACGTTGGAATTCGAGGGT GTCGCTATCAAGATCGATAACGGCACGCCCGGCCCGCAGGCGAAAGATAAATTTACCATTAAGACCGTGAGTAACGTGGC GGCCAACTTACAGGTTGCTATTACCGATTCCAGCAAGATTGCCGCTGCGGGTAGTGCCGATGGCGGTATCAGTGACAACA CCAATGCGCAGGCGTTGCTGGATTTGCAGAGCAAAAAGTTGGTCGAAGGTAAAACCACCTTGTCCGGTGCTTACGCCGGT TTAGTCAGTAACGTTGGTAACCAGACCGCGACGGCTAAAACCAACAGCACTGCACAGGCGAATATCGTCACCCAATTAAC CACCGAGCAACAGTCAATCTCTGGGGTGAATCTGGATGAAGAGTACGGCGATCTACAACGTTTCCAGCAATATTATTTGG CGAATGCACAGGTCCTGCAAGCGGCGTCTACGTTGTTTAATACCTTGCTCAGTATAAGTGACTAA
Upstream 100 bases:
>100_bases TTACAGGCTGTGCGGGGGCTTCGGTTACCTCAGGCAGTATCCCAATATCAATAAATGCAGGCGCTGCGATGCTCGTCGCC TGCTGTAAAAGGATTGCTTC
Downstream 100 bases:
>100_bases TTTATTGTTTATATTGGTTAAATTATTATTGGCGGTGACGATATTATTGCCTGCGAGGGCAATCATGCGCCGCGCTTAAT TCATTCCAGGTTTAGCGGGT
Product: flagellar hook-associated protein FlgK
Products: NA
Alternate protein names: HAP1 [H]
Number of amino acids: Translated: 554; Mature: 553
Protein sequence:
>554_residues MSNSLMNTAMSGLNAAQYALSTVSNNITNFQVAGYNRQNTVFAQNGGTITSAGFIGNGVTVTGVNREYNAFITNQLRASQ TQSSGLATYYQQISQIDNLLSNASNNLSTTMQDFFSNLQNLVSNADDDAARKTVLGKAEGLVNQFQNADKYLRDMDDGVN QKITDSATQINNYAEQIAKLNDQITRLRGSSGSEPNALLDQRDQLVTELNQIMAVTVTQQDGDAYNVSFAGGLSLVQGPN AYKVEAIPSSADATRLTLGYKRGNGEATEVDESRITTGSLGGTLKFRSEALDSARNQLGQLALVMADSFNTQHNAGFDIN GDEGEDFFSFADPTVLKNAKNQGNASITVEYKDTSKVKASDYTVEFDGTDWQVTRLSDNTKVQTTPGVNADGDPTLEFEG VAIKIDNGTPGPQAKDKFTIKTVSNVAANLQVAITDSSKIAAAGSADGGISDNTNAQALLDLQSKKLVEGKTTLSGAYAG LVSNVGNQTATAKTNSTAQANIVTQLTTEQQSISGVNLDEEYGDLQRFQQYYLANAQVLQAASTLFNTLLSISD
Sequences:
>Translated_554_residues MSNSLMNTAMSGLNAAQYALSTVSNNITNFQVAGYNRQNTVFAQNGGTITSAGFIGNGVTVTGVNREYNAFITNQLRASQ TQSSGLATYYQQISQIDNLLSNASNNLSTTMQDFFSNLQNLVSNADDDAARKTVLGKAEGLVNQFQNADKYLRDMDDGVN QKITDSATQINNYAEQIAKLNDQITRLRGSSGSEPNALLDQRDQLVTELNQIMAVTVTQQDGDAYNVSFAGGLSLVQGPN AYKVEAIPSSADATRLTLGYKRGNGEATEVDESRITTGSLGGTLKFRSEALDSARNQLGQLALVMADSFNTQHNAGFDIN GDEGEDFFSFADPTVLKNAKNQGNASITVEYKDTSKVKASDYTVEFDGTDWQVTRLSDNTKVQTTPGVNADGDPTLEFEG VAIKIDNGTPGPQAKDKFTIKTVSNVAANLQVAITDSSKIAAAGSADGGISDNTNAQALLDLQSKKLVEGKTTLSGAYAG LVSNVGNQTATAKTNSTAQANIVTQLTTEQQSISGVNLDEEYGDLQRFQQYYLANAQVLQAASTLFNTLLSISD >Mature_553_residues SNSLMNTAMSGLNAAQYALSTVSNNITNFQVAGYNRQNTVFAQNGGTITSAGFIGNGVTVTGVNREYNAFITNQLRASQT QSSGLATYYQQISQIDNLLSNASNNLSTTMQDFFSNLQNLVSNADDDAARKTVLGKAEGLVNQFQNADKYLRDMDDGVNQ KITDSATQINNYAEQIAKLNDQITRLRGSSGSEPNALLDQRDQLVTELNQIMAVTVTQQDGDAYNVSFAGGLSLVQGPNA YKVEAIPSSADATRLTLGYKRGNGEATEVDESRITTGSLGGTLKFRSEALDSARNQLGQLALVMADSFNTQHNAGFDING DEGEDFFSFADPTVLKNAKNQGNASITVEYKDTSKVKASDYTVEFDGTDWQVTRLSDNTKVQTTPGVNADGDPTLEFEGV AIKIDNGTPGPQAKDKFTIKTVSNVAANLQVAITDSSKIAAAGSADGGISDNTNAQALLDLQSKKLVEGKTTLSGAYAGL VSNVGNQTATAKTNSTAQANIVTQLTTEQQSISGVNLDEEYGDLQRFQQYYLANAQVLQAASTLFNTLLSISD
Specific function: Unknown
COG id: COG1256
COG function: function code N; Flagellar hook-associated protein
Gene ontology:
Cell location: Secreted. Bacterial flagellum (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the flagella basal body rod proteins family [H]
Homologues:
Organism=Escherichia coli, GI1787323, Length=551, Percent_Identity=57.5317604355717, Blast_Score=612, Evalue=1e-176,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010930 - InterPro: IPR001444 - InterPro: IPR002371 [H]
Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod [H]
EC number: NA
Molecular weight: Translated: 59036; Mature: 58905
Theoretical pI: Translated: 4.27; Mature: 4.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNSLMNTAMSGLNAAQYALSTVSNNITNFQVAGYNRQNTVFAQNGGTITSAGFIGNGVT CCCHHHHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCEEEECCCCCCCEE VTGVNREYNAFITNQLRASQTQSSGLATYYQQISQIDNLLSNASNNLSTTMQDFFSNLQN EEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH LVSNADDDAARKTVLGKAEGLVNQFQNADKYLRDMDDGVNQKITDSATQINNYAEQIAKL HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH NDQITRLRGSSGSEPNALLDQRDQLVTELNQIMAVTVTQQDGDAYNVSFAGGLSLVQGPN HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHEEEEEEEECCCCEEEEEEECCCCEEECCC AYKVEAIPSSADATRLTLGYKRGNGEATEVDESRITTGSLGGTLKFRSEALDSARNQLGQ CEEEEECCCCCCCEEEEEEEECCCCCCCCCCCHHCEECCCCCEEEEHHHHHHHHHHHHHH LALVMADSFNTQHNAGFDINGDEGEDFFSFADPTVLKNAKNQGNASITVEYKDTSKVKAS EEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHCCCCCCCEEEEEEECCCCCEEEC DYTVEFDGTDWQVTRLSDNTKVQTTPGVNADGDPTLEFEGVAIKIDNGTPGPQAKDKFTI CEEEEECCCCEEEEEECCCCEEEECCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEE KTVSNVAANLQVAITDSSKIAAAGSADGGISDNTNAQALLDLQSKKLVEGKTTLSGAYAG EEHHHHHCEEEEEEECCCCEEECCCCCCCCCCCCCCEEEEECHHHHHHCCCCHHHHHHHH LVSNVGNQTATAKTNSTAQANIVTQLTTEQQSISGVNLDEEYGDLQRFQQYYLANAQVLQ HHHHCCCCCEECCCCCCCEEEEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHH AASTLFNTLLSISD HHHHHHHHHHHCCC >Mature Secondary Structure SNSLMNTAMSGLNAAQYALSTVSNNITNFQVAGYNRQNTVFAQNGGTITSAGFIGNGVT CCHHHHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCEEEECCCCCCCEE VTGVNREYNAFITNQLRASQTQSSGLATYYQQISQIDNLLSNASNNLSTTMQDFFSNLQN EEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH LVSNADDDAARKTVLGKAEGLVNQFQNADKYLRDMDDGVNQKITDSATQINNYAEQIAKL HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH NDQITRLRGSSGSEPNALLDQRDQLVTELNQIMAVTVTQQDGDAYNVSFAGGLSLVQGPN HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHEEEEEEEECCCCEEEEEEECCCCEEECCC AYKVEAIPSSADATRLTLGYKRGNGEATEVDESRITTGSLGGTLKFRSEALDSARNQLGQ CEEEEECCCCCCCEEEEEEEECCCCCCCCCCCHHCEECCCCCEEEEHHHHHHHHHHHHHH LALVMADSFNTQHNAGFDINGDEGEDFFSFADPTVLKNAKNQGNASITVEYKDTSKVKAS EEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHCCCCCCCEEEEEEECCCCCEEEC DYTVEFDGTDWQVTRLSDNTKVQTTPGVNADGDPTLEFEGVAIKIDNGTPGPQAKDKFTI CEEEEECCCCEEEEEECCCCEEEECCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEE KTVSNVAANLQVAITDSSKIAAAGSADGGISDNTNAQALLDLQSKKLVEGKTTLSGAYAG EEHHHHHCEEEEEEECCCCEEECCCCCCCCCCCCCCEEEEECHHHHHHCCCCHHHHHHHH LVSNVGNQTATAKTNSTAQANIVTQLTTEQQSISGVNLDEEYGDLQRFQQYYLANAQVLQ HHHHCCCCCEECCCCCCCEEEEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHH AASTLFNTLLSISD HHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503; 8158647 [H]