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The map label for this gene is ygbI [H]

Identifier: 170024484

GI number: 170024484

Start: 2504748

End: 2505518

Strand: Direct

Name: ygbI [H]

Synonym: YPK_2255

Alternate gene names: 170024484

Gene position: 2504748-2505518 (Clockwise)

Preceding gene: 170024463

Following gene: 170024485

Centisome position: 53.41

GC content: 50.19

Gene sequence:

>771_bases
GTGATACCGATTGAACGTCATCAAAAAATATTGGCACTGGTCGCTGAACGTGGCGTGGTCAGCATCGCTGAACTAACGGA
ACGTTTGGGGGTATCACATATGACCATACGCCGCGATGTGCAGAAATTAGAAGAGCAAGGTGCAGTATTGTCCGTTTCAG
GCGGGGTGCGTTCGACACAACGGCTGGCAATTGAACCCTCTCATCAGGATAAAACGATGATGTTTAGTCGCCAAAAACAG
GCTATTGGCACATCGGCTGCTCTGCATATTCCCCGTAATAGCTGTATTTATCTTGATGCAGGCACCACAACGCTGGCATT
GGCTCGTCAACTGGAGGACAGAGATGATCTGTTAGTGGTAACCAACGACTTTGTTATTGCTAACTTTTTGATCGAATCCT
CCCAATGCCGGATGATCCACTCCGGCGGGACGCTGTGCCGTAAAAATCGCTCTTGTATCGGAGAGGCTGCCGCGCATTCC
CTGAGAAACCTGTCCATCGATATTGCCTTTATTTCCGCGTCCTGCTGGGGCCTTCGAGGTATATCCACGCCGGATGAAGA
TAAAGTCCCCGTAAAGCGCGCCATCAGTGAGGCCAGTAGTAAGCGTGTATTGCTGGCTGATGCATCAAAATACGGCAAGG
TTGCGACTTATCTGGCATTGCCACTCACGGCATTCGACGTGGTTATCACTGACAACAGTTTATCCTCCACCGTGTATGAG
GAACTGGCAGAAAAAGCACTCGAGTTAATCATCGCCTCTCCTCCGCGTTAG

Upstream 100 bases:

>100_bases
TTAACGTTAAAAAATGAGAAGTACATTTTTATTGCTGGCATATAATCACATTAATTATCATCATCTATTCTCTCGTATAT
TAACTGAGTGAGGGGTACAC

Downstream 100 bases:

>100_bases
TACTTATGATGATGGTTAAAAAGAAGGTGATAGTTAAAAAGAGGGTGATAGTTAAAATAAAGTGGTAGCTAAAAAATTGA
GCGTAGTTAAAAAATCGATC

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MIPIERHQKILALVAERGVVSIAELTERLGVSHMTIRRDVQKLEEQGAVLSVSGGVRSTQRLAIEPSHQDKTMMFSRQKQ
AIGTSAALHIPRNSCIYLDAGTTTLALARQLEDRDDLLVVTNDFVIANFLIESSQCRMIHSGGTLCRKNRSCIGEAAAHS
LRNLSIDIAFISASCWGLRGISTPDEDKVPVKRAISEASSKRVLLADASKYGKVATYLALPLTAFDVVITDNSLSSTVYE
ELAEKALELIIASPPR

Sequences:

>Translated_256_residues
MIPIERHQKILALVAERGVVSIAELTERLGVSHMTIRRDVQKLEEQGAVLSVSGGVRSTQRLAIEPSHQDKTMMFSRQKQ
AIGTSAALHIPRNSCIYLDAGTTTLALARQLEDRDDLLVVTNDFVIANFLIESSQCRMIHSGGTLCRKNRSCIGEAAAHS
LRNLSIDIAFISASCWGLRGISTPDEDKVPVKRAISEASSKRVLLADASKYGKVATYLALPLTAFDVVITDNSLSSTVYE
ELAEKALELIIASPPR
>Mature_256_residues
MIPIERHQKILALVAERGVVSIAELTERLGVSHMTIRRDVQKLEEQGAVLSVSGGVRSTQRLAIEPSHQDKTMMFSRQKQ
AIGTSAALHIPRNSCIYLDAGTTTLALARQLEDRDDLLVVTNDFVIANFLIESSQCRMIHSGGTLCRKNRSCIGEAAAHS
LRNLSIDIAFISASCWGLRGISTPDEDKVPVKRAISEASSKRVLLADASKYGKVATYLALPLTAFDVVITDNSLSSTVYE
ELAEKALELIIASPPR

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI226510968, Length=252, Percent_Identity=62.3015873015873, Blast_Score=317, Evalue=4e-88,
Organism=Escherichia coli, GI1789519, Length=250, Percent_Identity=29.2, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1789829, Length=258, Percent_Identity=32.5581395348837, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1789059, Length=253, Percent_Identity=29.2490118577075, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI87082344, Length=247, Percent_Identity=27.9352226720648, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1787540, Length=237, Percent_Identity=29.1139240506329, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788069, Length=237, Percent_Identity=27.4261603375527, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1790753, Length=256, Percent_Identity=28.515625, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790635, Length=255, Percent_Identity=24.7058823529412, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1789170, Length=219, Percent_Identity=31.0502283105023, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787063, Length=211, Percent_Identity=29.3838862559242, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27912; Mature: 27912

Theoretical pI: Translated: 7.91; Mature: 7.91

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPIERHQKILALVAERGVVSIAELTERLGVSHMTIRRDVQKLEEQGAVLSVSGGVRSTQ
CCCHHHHHHHHHHHHHCCCEEHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEECCCCCCCE
RLAIEPSHQDKTMMFSRQKQAIGTSAALHIPRNSCIYLDAGTTTLALARQLEDRDDLLVV
EEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCEEEEECCCHHHHHHHHHCCCCCEEEE
TNDFVIANFLIESSQCRMIHSGGTLCRKNRSCIGEAAAHSLRNLSIDIAFISASCWGLRG
ECCEEEEEEEECCCCCEEEECCCCEECCCCHHHHHHHHHHHHCCEEEEEEEEECCCCCCC
ISTPDEDKVPVKRAISEASSKRVLLADASKYGKVATYLALPLTAFDVVITDNSLSSTVYE
CCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHEEEEEEEECCCHHHHHHH
ELAEKALELIIASPPR
HHHHHHHHHHCCCCCC
>Mature Secondary Structure
MIPIERHQKILALVAERGVVSIAELTERLGVSHMTIRRDVQKLEEQGAVLSVSGGVRSTQ
CCCHHHHHHHHHHHHHCCCEEHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEECCCCCCCE
RLAIEPSHQDKTMMFSRQKQAIGTSAALHIPRNSCIYLDAGTTTLALARQLEDRDDLLVV
EEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCEEEEECCCHHHHHHHHHCCCCCEEEE
TNDFVIANFLIESSQCRMIHSGGTLCRKNRSCIGEAAAHSLRNLSIDIAFISASCWGLRG
ECCEEEEEEEECCCCCEEEECCCCEECCCCHHHHHHHHHHHHCCEEEEEEEEECCCCCCC
ISTPDEDKVPVKRAISEASSKRVLLADASKYGKVATYLALPLTAFDVVITDNSLSSTVYE
CCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHEEEEEEEECCCHHHHHHH
ELAEKALELIIASPPR
HHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]