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The map label for this gene is pth [H]

Identifier: 170024417

GI number: 170024417

Start: 2424022

End: 2424642

Strand: Direct

Name: pth [H]

Synonym: YPK_2186

Alternate gene names: 170024417

Gene position: 2424022-2424642 (Clockwise)

Preceding gene: 170024415

Following gene: 170024418

Centisome position: 51.69

GC content: 46.54

Gene sequence:

>621_bases
TTGATTCCTTTAGTCATAGCGAAAGACAACGTGAGTAGCATTAAATTAATCGTTGGGCTGGCAAATCCGGGCGCAGAATA
TGCCCAAACCCGCCATAATGCGGGAGCCTGGTATGTAGATTTATTGGCTGAACGCCACAATCAGTCCCTGAAAGAAGAGA
GTAAATTCTTTGGTTATACCGCACGGTTAAATCTGGCAGGCCAAGATATCCGTTTATTGGTACCCGCCACGTTTATGAAT
CTCAGTGGTAAAGCCGTCGCGGCAATGGCCAGTTTTTACCGCATTCTGCCGGAAGAGATTCTAGTCGCCCACGATGAGCT
GGATATTTTACCGGGGATGGCAAAATTAAAACTGGGAGGAGGCAACGGCGGCCATAATGGTCTGAAAGACATTCAGAACA
AATTAGGTAATAACCCTAATTTTTACCGCTTACGTATCGGTATTGGTCATCCTGGTGATAAAAGCAAAGTCACTGGCTTT
GTTTTGGGTAAACCCCCCGCTAGCGAACAAACGTTGATAGACAATGCCATTGACGAGTCTATCCGCTGCACTGAAGTGCT
ACTCAATGAAGGCATGACCAAAGCAATGAACCGCCTGCACGCTTTTAAGGCCAGCGCATAA

Upstream 100 bases:

>100_bases
CAATTATTTTTCTACAATCCCCCCTTCTCCTGTATTCCAGTATGAACAAAATGTACTCGAGTTTTGTTATTAGGCACCAT
GACAGGTAAACTGTGGCACT

Downstream 100 bases:

>100_bases
CATCATTTATCGAGTCATCCTCTGAGGCGTGCCATTACGCACGCGGCGAAAGAGCATGATCGTGATAAATCATCATTATG
TGTATAATGGCGGCATAAAT

Product: peptidyl-tRNA hydrolase

Products: NA

Alternate protein names: PTH [H]

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MIPLVIAKDNVSSIKLIVGLANPGAEYAQTRHNAGAWYVDLLAERHNQSLKEESKFFGYTARLNLAGQDIRLLVPATFMN
LSGKAVAAMASFYRILPEEILVAHDELDILPGMAKLKLGGGNGGHNGLKDIQNKLGNNPNFYRLRIGIGHPGDKSKVTGF
VLGKPPASEQTLIDNAIDESIRCTEVLLNEGMTKAMNRLHAFKASA

Sequences:

>Translated_206_residues
MIPLVIAKDNVSSIKLIVGLANPGAEYAQTRHNAGAWYVDLLAERHNQSLKEESKFFGYTARLNLAGQDIRLLVPATFMN
LSGKAVAAMASFYRILPEEILVAHDELDILPGMAKLKLGGGNGGHNGLKDIQNKLGNNPNFYRLRIGIGHPGDKSKVTGF
VLGKPPASEQTLIDNAIDESIRCTEVLLNEGMTKAMNRLHAFKASA
>Mature_206_residues
MIPLVIAKDNVSSIKLIVGLANPGAEYAQTRHNAGAWYVDLLAERHNQSLKEESKFFGYTARLNLAGQDIRLLVPATFMN
LSGKAVAAMASFYRILPEEILVAHDELDILPGMAKLKLGGGNGGHNGLKDIQNKLGNNPNFYRLRIGIGHPGDKSKVTGF
VLGKPPASEQTLIDNAIDESIRCTEVLLNEGMTKAMNRLHAFKASA

Specific function: The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis [H]

COG id: COG0193

COG function: function code J; Peptidyl-tRNA hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PTH family [H]

Homologues:

Organism=Homo sapiens, GI50897284, Length=176, Percent_Identity=34.6590909090909, Blast_Score=85, Evalue=4e-17,
Organism=Escherichia coli, GI1787455, Length=193, Percent_Identity=78.2383419689119, Blast_Score=299, Evalue=8e-83,
Organism=Saccharomyces cerevisiae, GI6321983, Length=176, Percent_Identity=29.5454545454545, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001328
- InterPro:   IPR018171 [H]

Pfam domain/function: PF01195 Pept_tRNA_hydro [H]

EC number: =3.1.1.29 [H]

Molecular weight: Translated: 22334; Mature: 22334

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: PS01195 PEPT_TRNA_HYDROL_1 ; PS01196 PEPT_TRNA_HYDROL_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPLVIAKDNVSSIKLIVGLANPGAEYAQTRHNAGAWYVDLLAERHNQSLKEESKFFGYT
CCEEEEECCCCCEEEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCEE
ARLNLAGQDIRLLVPATFMNLSGKAVAAMASFYRILPEEILVAHDELDILPGMAKLKLGG
EEEEECCCCEEEEEEEHHHCCCCHHHHHHHHHHHHCHHHHHHCCCCHHHCCCCEEEEECC
GNGGHNGLKDIQNKLGNNPNFYRLRIGIGHPGDKSKVTGFVLGKPPASEQTLIDNAIDES
CCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCH
IRCTEVLLNEGMTKAMNRLHAFKASA
HHHHHHHHHCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIPLVIAKDNVSSIKLIVGLANPGAEYAQTRHNAGAWYVDLLAERHNQSLKEESKFFGYT
CCEEEEECCCCCEEEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCEE
ARLNLAGQDIRLLVPATFMNLSGKAVAAMASFYRILPEEILVAHDELDILPGMAKLKLGG
EEEEECCCCEEEEEEEHHHCCCCHHHHHHHHHHHHCHHHHHHCCCCHHHCCCCEEEEECC
GNGGHNGLKDIQNKLGNNPNFYRLRIGIGHPGDKSKVTGFVLGKPPASEQTLIDNAIDES
CCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCH
IRCTEVLLNEGMTKAMNRLHAFKASA
HHHHHHHHHCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14528314 [H]