Click here to switch to the map view.

The map label for this gene is ydbH [H]

Identifier: 170024158

GI number: 170024158

Start: 2126358

End: 2129072

Strand: Direct

Name: ydbH [H]

Synonym: YPK_1919

Alternate gene names: 170024158

Gene position: 2126358-2129072 (Clockwise)

Preceding gene: 170024155

Following gene: 170024159

Centisome position: 45.34

GC content: 50.24

Gene sequence:

>2715_bases
ATGGCTAAATGCGCAAAAATAGTAGTCGGGTTGTTATTAATAAGCGCACTGTCGCTGCTCGTGTTATGGAAAACTCTGCC
GACATGGTTACCGAGAGTCGCCGGGTATTGGTTACCTGCGGGTAGCCAACTGCAATTACCCGTTCTTCCTGTGTGGCGTA
ATGGCGCGTTGCGTGTCGAGCAACTGCGTTATTTGGCTCAGGATTGTACGCTCGCTAATATCAGTCAACTGAGTATAGGT
TATCACCAAGGACGCTGGCAGTTGGGTGCGGGTGATGTGGTGCTGGAGACTGCTTGTTTGAGTCAGTTACCGTCTGGCGG
TGATAGCTCTCCGCTCGATTTGGCGCAATGGCAGCAGCAACTGTCCCGTTTTGATCTTACTATCAATCATCTGCTGGTCA
CCCCTTGGCAGCAATATGCAGGCAAGCTGACACTGACATCACCTGACAACAATAAATCTCTTCAGACACTCGGTTATCAG
GGGCAGCAACTCAGCTTTGCTGTGACGTTGAATGAACAACAGCAGCTTAGTTTGAATCAGTTCTCTATGGCCATTCCCGG
TATGCCTCAACTGTTTCAGCTTAGCGGTAAAATTAAAATCCCGTTGTCATTGGATGAGTGGCCAGAGCAAGGCGCATTAG
ATGGGCTATTGACCACCGGTTATTTGTCGAAGCCGCTGCTATTGAACTTGAGTTGGCAGCAACAGCAGGGCGTATTGACC
TTAACTGAGCGTGGCGATAACCAACCTTTAGCGCGTTTACCCTGGCAAGCCTCGGCGAATCTTATTCAGATCGTGAACGG
TCAGTGGCAATGGCCATATGGTCAACAGCCGTTGAAGGGGGGCGTTAACCTGACACTACACGATTGGGATCAAGGATTGG
AACAGACCTCGATTGATGCACGGATTAACGTGATTACCTCGGGGAAAAACGGCAAAGGGAACGCCGTATTGACGCTGGGG
CCGGGCAATTTGGGTTTAATTAACAGTGAGTTAAAATTCCAACTAAGTGGGCAAGTAAATCTGGAAACCATGGTGTTTAA
CGCCACGATCCCCGGTTTACTTAGCGGTTCAGTATTGAATCCGACGTGGATATTGTCCCCCGGCGCCTTGCTGCGTACTT
ATGGTAATCTGACCCCGGAATTGCGGATAAAAGATGCTCGTTGGCCGCTGGCGGGTATCCGGGTGACCGCCGCGGGTGTT
ACGGGGCGTTTACAGGCAATCGTTGATGCTCAGGATAGCTACTGGGGGAGTGTCAATCTGCATCTGGATGGGCAGGCACA
AGCGTTTTGGCCAGATAAGGGCAATTGGCAATGGCGCTATTGGGGGAGCGGAAACTTGCCACCATTAGCGGCACGCTGGG
ATGTGGGAGGGACGGGGAGTTGGCGGGATACGCTGATTACGGTGGATACGCTGTCAACGGGGTTTGATCGTTTACAATAT
GGCCTAGTCAAGGTGGACGCACCACGTTTGATATTGACGAAACCGCTGACCTGGCAACGAGATAACCACCACCCCGCGTT
TATTGCAGGTCTGAAACTGAGCGCTAAAAAAGTGGAGTTCAGTGATGGTGGCGGTTATCTCCCCCCGTCAGTGTTATCAC
TGCAATTCAATGGCCGCGATCTCGATAGTTTCCTCTGGCAAGGGCAATTGCAAGCTCAGTCTATCGGGCCAATTCCGCTA
CGTGGCCGCTGGGATGGTGAGCGCTTGCGTGGTGAGGGTTGGTGGCCTAAGCAGTCATTAATGGTCTTCCAGCCACTGAT
TTCAAAAGATCTGGGGATCAAACTGCGGGACGGTACGTTTTATGCGCAAGCCGCATTCTCTGCGGCGCGTGAACAAGGGT
TTACTGCCGGTGGGCATTGGGTGGTAAACAATGGCGGCATGTGGCTGCAGGACGGTGAGTTAAGCGGGCTAGATTTTGTC
ATGTCGTATCGTTTACAGAACCATCACTGGCAGTTAGGGGCTAAAGAGCCGGTAATGCTACGTATCGCTTCGTTGAATAA
CCTCTTTGATATGCAGAATATTACTGCTGATTTACAGGGGACTTATCCTTATTCAGAAACGGCACCACTAACATTAAGCA
ATGTTGGCATGGATATTTTGAACGGCCACCTGAGCTTGTCTGCGCTGCGTTTGCCACAACATGATGCCGCCGTCCTCAAA
TTAAGTCAGATTGATCTGAGCGCGTTGTTCACCGTATTACAACCGAAGCAATTTGCGATGTCGGGTAAAGTGAACGGCGA
ATTACCGCTTTATCTTAATAACCCACAGTGGCTGGTGCGTAATGGTTGGATTGCCAATGACGGCATGCTGACATTACGGC
TCGATAAAGACCTGACCGATTCTATCAGTGAGAGCAATACTGTCGCCGGTGCGGCGATTGACTGGTTGCGTTACATGGAG
ATTTCTCAATCGTATACCAAAGTGGATCTGGATAATCTGGGGCAGTTGACGCTAACCTCTAAAGTTCATGGTGTGAATTC
GCAAAAAAATAGCACACGGGCGGTAGAGCTAAATTATCAGCACCAGGAGAACCTATTCCAACTTTGGCGCAGCCTACGAT
TTGGTGACAATTTACAAGAGTGGTTGCAACAGACTATTTCATTACCATCAGCGAGTTCATTACCGTCCGCGAGTTCATTA
CCACCCGCGAGTTCATTACCGCAAGGCATTTCATCACAACTAACAGCACCAATACCGACGAGGGCGAAGGAATGA

Upstream 100 bases:

>100_bases
CTTGCCGCAATGTAGGGCTCAGTTATTGTAGGTCTTGGTGGTTTTTGGGCGCAGTGATTGAAGCACTCAGTGTCAGGTTG
GTGATAAAACAAGGCAAGTC

Downstream 100 bases:

>100_bases
AGATTTTGACAGGGGAGCGTGTGGCGATGGCTCTGGGTATTTTACTGCTCAGCGGCTGTGTCCGTCTTGAGGTAGCGACA
CCAGAGAAACCTATCACGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 904; Mature: 903

Protein sequence:

>904_residues
MAKCAKIVVGLLLISALSLLVLWKTLPTWLPRVAGYWLPAGSQLQLPVLPVWRNGALRVEQLRYLAQDCTLANISQLSIG
YHQGRWQLGAGDVVLETACLSQLPSGGDSSPLDLAQWQQQLSRFDLTINHLLVTPWQQYAGKLTLTSPDNNKSLQTLGYQ
GQQLSFAVTLNEQQQLSLNQFSMAIPGMPQLFQLSGKIKIPLSLDEWPEQGALDGLLTTGYLSKPLLLNLSWQQQQGVLT
LTERGDNQPLARLPWQASANLIQIVNGQWQWPYGQQPLKGGVNLTLHDWDQGLEQTSIDARINVITSGKNGKGNAVLTLG
PGNLGLINSELKFQLSGQVNLETMVFNATIPGLLSGSVLNPTWILSPGALLRTYGNLTPELRIKDARWPLAGIRVTAAGV
TGRLQAIVDAQDSYWGSVNLHLDGQAQAFWPDKGNWQWRYWGSGNLPPLAARWDVGGTGSWRDTLITVDTLSTGFDRLQY
GLVKVDAPRLILTKPLTWQRDNHHPAFIAGLKLSAKKVEFSDGGGYLPPSVLSLQFNGRDLDSFLWQGQLQAQSIGPIPL
RGRWDGERLRGEGWWPKQSLMVFQPLISKDLGIKLRDGTFYAQAAFSAAREQGFTAGGHWVVNNGGMWLQDGELSGLDFV
MSYRLQNHHWQLGAKEPVMLRIASLNNLFDMQNITADLQGTYPYSETAPLTLSNVGMDILNGHLSLSALRLPQHDAAVLK
LSQIDLSALFTVLQPKQFAMSGKVNGELPLYLNNPQWLVRNGWIANDGMLTLRLDKDLTDSISESNTVAGAAIDWLRYME
ISQSYTKVDLDNLGQLTLTSKVHGVNSQKNSTRAVELNYQHQENLFQLWRSLRFGDNLQEWLQQTISLPSASSLPSASSL
PPASSLPQGISSQLTAPIPTRAKE

Sequences:

>Translated_904_residues
MAKCAKIVVGLLLISALSLLVLWKTLPTWLPRVAGYWLPAGSQLQLPVLPVWRNGALRVEQLRYLAQDCTLANISQLSIG
YHQGRWQLGAGDVVLETACLSQLPSGGDSSPLDLAQWQQQLSRFDLTINHLLVTPWQQYAGKLTLTSPDNNKSLQTLGYQ
GQQLSFAVTLNEQQQLSLNQFSMAIPGMPQLFQLSGKIKIPLSLDEWPEQGALDGLLTTGYLSKPLLLNLSWQQQQGVLT
LTERGDNQPLARLPWQASANLIQIVNGQWQWPYGQQPLKGGVNLTLHDWDQGLEQTSIDARINVITSGKNGKGNAVLTLG
PGNLGLINSELKFQLSGQVNLETMVFNATIPGLLSGSVLNPTWILSPGALLRTYGNLTPELRIKDARWPLAGIRVTAAGV
TGRLQAIVDAQDSYWGSVNLHLDGQAQAFWPDKGNWQWRYWGSGNLPPLAARWDVGGTGSWRDTLITVDTLSTGFDRLQY
GLVKVDAPRLILTKPLTWQRDNHHPAFIAGLKLSAKKVEFSDGGGYLPPSVLSLQFNGRDLDSFLWQGQLQAQSIGPIPL
RGRWDGERLRGEGWWPKQSLMVFQPLISKDLGIKLRDGTFYAQAAFSAAREQGFTAGGHWVVNNGGMWLQDGELSGLDFV
MSYRLQNHHWQLGAKEPVMLRIASLNNLFDMQNITADLQGTYPYSETAPLTLSNVGMDILNGHLSLSALRLPQHDAAVLK
LSQIDLSALFTVLQPKQFAMSGKVNGELPLYLNNPQWLVRNGWIANDGMLTLRLDKDLTDSISESNTVAGAAIDWLRYME
ISQSYTKVDLDNLGQLTLTSKVHGVNSQKNSTRAVELNYQHQENLFQLWRSLRFGDNLQEWLQQTISLPSASSLPSASSL
PPASSLPQGISSQLTAPIPTRAKE
>Mature_903_residues
AKCAKIVVGLLLISALSLLVLWKTLPTWLPRVAGYWLPAGSQLQLPVLPVWRNGALRVEQLRYLAQDCTLANISQLSIGY
HQGRWQLGAGDVVLETACLSQLPSGGDSSPLDLAQWQQQLSRFDLTINHLLVTPWQQYAGKLTLTSPDNNKSLQTLGYQG
QQLSFAVTLNEQQQLSLNQFSMAIPGMPQLFQLSGKIKIPLSLDEWPEQGALDGLLTTGYLSKPLLLNLSWQQQQGVLTL
TERGDNQPLARLPWQASANLIQIVNGQWQWPYGQQPLKGGVNLTLHDWDQGLEQTSIDARINVITSGKNGKGNAVLTLGP
GNLGLINSELKFQLSGQVNLETMVFNATIPGLLSGSVLNPTWILSPGALLRTYGNLTPELRIKDARWPLAGIRVTAAGVT
GRLQAIVDAQDSYWGSVNLHLDGQAQAFWPDKGNWQWRYWGSGNLPPLAARWDVGGTGSWRDTLITVDTLSTGFDRLQYG
LVKVDAPRLILTKPLTWQRDNHHPAFIAGLKLSAKKVEFSDGGGYLPPSVLSLQFNGRDLDSFLWQGQLQAQSIGPIPLR
GRWDGERLRGEGWWPKQSLMVFQPLISKDLGIKLRDGTFYAQAAFSAAREQGFTAGGHWVVNNGGMWLQDGELSGLDFVM
SYRLQNHHWQLGAKEPVMLRIASLNNLFDMQNITADLQGTYPYSETAPLTLSNVGMDILNGHLSLSALRLPQHDAAVLKL
SQIDLSALFTVLQPKQFAMSGKVNGELPLYLNNPQWLVRNGWIANDGMLTLRLDKDLTDSISESNTVAGAAIDWLRYMEI
SQSYTKVDLDNLGQLTLTSKVHGVNSQKNSTRAVELNYQHQENLFQLWRSLRFGDNLQEWLQQTISLPSASSLPSASSLP
PASSLPQGISSQLTAPIPTRAKE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787646, Length=848, Percent_Identity=46.6981132075472, Blast_Score=774, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021730 [H]

Pfam domain/function: PF11739 DctA-YdbH [H]

EC number: NA

Molecular weight: Translated: 99787; Mature: 99656

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: PS00687 ALDEHYDE_DEHYDR_GLU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKCAKIVVGLLLISALSLLVLWKTLPTWLPRVAGYWLPAGSQLQLPVLPVWRNGALRVE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCCEEEEEEEEECCCCCEEHH
QLRYLAQDCTLANISQLSIGYHQGRWQLGAGDVVLETACLSQLPSGGDSSPLDLAQWQQQ
HHHHHHHCCCCCCHHHEEEEEECCEEEECCCCEEHHHHHHHHCCCCCCCCCCCHHHHHHH
LSRFDLTINHLLVTPWQQYAGKLTLTSPDNNKSLQTLGYQGQQLSFAVTLNEQQQLSLNQ
HHHHCEEEEEEEECCHHHHCCEEEEECCCCCCCEEEECCCCCEEEEEEEECCCHHCCHHH
FSMAIPGMPQLFQLSGKIKIPLSLDEWPEQGALDGLLTTGYLSKPLLLNLSWQQQQGVLT
HEECCCCCCHHHCCCCCEEEEECCCCCCCCCCCCCCEECCCCCCCEEEEECCCCCCCEEE
LTERGDNQPLARLPWQASANLIQIVNGQWQWPYGQQPLKGGVNLTLHDWDQGLEQTSIDA
EEECCCCCCCEECCCCCCCCEEEEECCEECCCCCCCCCCCCCEEEEECHHCCCCCCCCCE
RINVITSGKNGKGNAVLTLGPGNLGLINSELKFQLSGQVNLETMVFNATIPGLLSGSVLN
EEEEEECCCCCCCCEEEEECCCCCEEECCEEEEEECCCEEEEEEEEECCCCHHHCCCCCC
PTWILSPGALLRTYGNLTPELRIKDARWPLAGIRVTAAGVTGRLQAIVDAQDSYWGSVNL
CEEEECCCHHHHHHCCCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCCCEEEEE
HLDGQAQAFWPDKGNWQWRYWGSGNLPPLAARWDVGGTGSWRDTLITVDTLSTGFDRLQY
EECCCEEEECCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEECHHCCHHHHHC
GLVKVDAPRLILTKPLTWQRDNHHPAFIAGLKLSAKKVEFSDGGGYLPPSVLSLQFNGRD
CEEEECCCEEEEECCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCEEEEEECCCC
LDSFLWQGQLQAQSIGPIPLRGRWDGERLRGEGWWPKQSLMVFQPLISKDLGIKLRDGTF
HHHHHHCCCEEECCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCE
YAQAAFSAAREQGFTAGGHWVVNNGGMWLQDGELSGLDFVMSYRLQNHHWQLGAKEPVML
EHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCHHHHHHHHHCCCEEECCCCCCEEE
RIASLNNLFDMQNITADLQGTYPYSETAPLTLSNVGMDILNGHLSLSALRLPQHDAAVLK
EEECCCCHHHHHHCCCCCCCCCCCCCCCCEEHHHCCHHHHCCCEEEEEEECCCCCCEEEE
LSQIDLSALFTVLQPKQFAMSGKVNGELPLYLNNPQWLVRNGWIANDGMLTLRLDKDLTD
EEHHHHHHHHHHHCCHHHEECCCCCCCEEEEECCCCEEEECCEEECCCEEEEEECCCCHH
SISESNTVAGAAIDWLRYMEISQSYTKVDLDNLGQLTLTSKVHGVNSQKNSTRAVELNYQ
HHCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEEECCCCCCCCCCEEEEEECH
HQENLFQLWRSLRFGDNLQEWLQQTISLPSASSLPSASSLPPASSLPQGISSQLTAPIPT
HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
RAKE
CCCC
>Mature Secondary Structure 
AKCAKIVVGLLLISALSLLVLWKTLPTWLPRVAGYWLPAGSQLQLPVLPVWRNGALRVE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCCEEEEEEEEECCCCCEEHH
QLRYLAQDCTLANISQLSIGYHQGRWQLGAGDVVLETACLSQLPSGGDSSPLDLAQWQQQ
HHHHHHHCCCCCCHHHEEEEEECCEEEECCCCEEHHHHHHHHCCCCCCCCCCCHHHHHHH
LSRFDLTINHLLVTPWQQYAGKLTLTSPDNNKSLQTLGYQGQQLSFAVTLNEQQQLSLNQ
HHHHCEEEEEEEECCHHHHCCEEEEECCCCCCCEEEECCCCCEEEEEEEECCCHHCCHHH
FSMAIPGMPQLFQLSGKIKIPLSLDEWPEQGALDGLLTTGYLSKPLLLNLSWQQQQGVLT
HEECCCCCCHHHCCCCCEEEEECCCCCCCCCCCCCCEECCCCCCCEEEEECCCCCCCEEE
LTERGDNQPLARLPWQASANLIQIVNGQWQWPYGQQPLKGGVNLTLHDWDQGLEQTSIDA
EEECCCCCCCEECCCCCCCCEEEEECCEECCCCCCCCCCCCCEEEEECHHCCCCCCCCCE
RINVITSGKNGKGNAVLTLGPGNLGLINSELKFQLSGQVNLETMVFNATIPGLLSGSVLN
EEEEEECCCCCCCCEEEEECCCCCEEECCEEEEEECCCEEEEEEEEECCCCHHHCCCCCC
PTWILSPGALLRTYGNLTPELRIKDARWPLAGIRVTAAGVTGRLQAIVDAQDSYWGSVNL
CEEEECCCHHHHHHCCCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCCCEEEEE
HLDGQAQAFWPDKGNWQWRYWGSGNLPPLAARWDVGGTGSWRDTLITVDTLSTGFDRLQY
EECCCEEEECCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEECHHCCHHHHHC
GLVKVDAPRLILTKPLTWQRDNHHPAFIAGLKLSAKKVEFSDGGGYLPPSVLSLQFNGRD
CEEEECCCEEEEECCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCEEEEEECCCC
LDSFLWQGQLQAQSIGPIPLRGRWDGERLRGEGWWPKQSLMVFQPLISKDLGIKLRDGTF
HHHHHHCCCEEECCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCE
YAQAAFSAAREQGFTAGGHWVVNNGGMWLQDGELSGLDFVMSYRLQNHHWQLGAKEPVML
EHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCHHHHHHHHHCCCEEECCCCCCEEE
RIASLNNLFDMQNITADLQGTYPYSETAPLTLSNVGMDILNGHLSLSALRLPQHDAAVLK
EEECCCCHHHHHHCCCCCCCCCCCCCCCCEEHHHCCHHHHCCCEEEEEEECCCCCCEEEE
LSQIDLSALFTVLQPKQFAMSGKVNGELPLYLNNPQWLVRNGWIANDGMLTLRLDKDLTD
EEHHHHHHHHHHHCCHHHEECCCCCCCEEEEECCCCEEEECCEEECCCEEEEEECCCCHH
SISESNTVAGAAIDWLRYMEISQSYTKVDLDNLGQLTLTSKVHGVNSQKNSTRAVELNYQ
HHCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEEECCCCCCCCCCEEEEEECH
HQENLFQLWRSLRFGDNLQEWLQQTISLPSASSLPSASSLPPASSLPQGISSQLTAPIPT
HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
RAKE
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9025293 [H]