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The map label for this gene is ydbJ [H]

Identifier: 170024155

GI number: 170024155

Start: 2124197

End: 2124520

Strand: Direct

Name: ydbJ [H]

Synonym: YPK_1916

Alternate gene names: 170024155

Gene position: 2124197-2124520 (Clockwise)

Preceding gene: 170024153

Following gene: 170024158

Centisome position: 45.3

GC content: 48.15

Gene sequence:

>324_bases
ATGAGAATATTTCAGGGAGTAGTGTGCGGTATGGCGCTATTTTTAGCCGCATGTAGCAGCAATGATTCAAATATCAATAC
GTTAAATAATAGCAAGACCTACGAACCCGAGCAGCAGGCTACCAACGCTATCGCTTATCGCAATGTGAATATGTCAAATG
ACGTCAATATGTCCAATTCGGCGGCAGCTAATTGTGCTAATGCGGGGGGAATATTGGCTAACACGAGGCAACTTCATGGC
GGTAGCGTAGGCATGTGCCAGTTACCGGATGGCAAACGTTGTGACGAGGAAGCGTTGTTGCGCGGTGCATGCCCGGTGCG
TTAA

Upstream 100 bases:

>100_bases
ACTAATATAGCGTGATGTACTAAATAGGGTGATGTACTACATAATACTAGCTAGGTTTATAAATTATAGGTTGATAAGTC
TATCCTGCCGGAGCAAAAGA

Downstream 100 bases:

>100_bases
TTGGCAGCAGCTATCGGAAAACTGCCGCCTAAATAAGAGGTTATGCATCAATGAGCATCAGTTAACCCAATCTTTCTGTT
GGTAAACTAAGGTGTGCGTA

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MRIFQGVVCGMALFLAACSSNDSNINTLNNSKTYEPEQQATNAIAYRNVNMSNDVNMSNSAAANCANAGGILANTRQLHG
GSVGMCQLPDGKRCDEEALLRGACPVR

Sequences:

>Translated_107_residues
MRIFQGVVCGMALFLAACSSNDSNINTLNNSKTYEPEQQATNAIAYRNVNMSNDVNMSNSAAANCANAGGILANTRQLHG
GSVGMCQLPDGKRCDEEALLRGACPVR
>Mature_107_residues
MRIFQGVVCGMALFLAACSSNDSNINTLNNSKTYEPEQQATNAIAYRNVNMSNDVNMSNSAAANCANAGGILANTRQLHG
GSVGMCQLPDGKRCDEEALLRGACPVR

Specific function: Unknown

COG id: COG3042

COG function: function code R; Putative hemolysin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081894, Length=104, Percent_Identity=44.2307692307692, Blast_Score=68, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005590 [H]

Pfam domain/function: PF03891 DUF333 [H]

EC number: NA

Molecular weight: Translated: 11313; Mature: 11313

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.6 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
10.3 %Cys+Met (Translated Protein)
5.6 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
10.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIFQGVVCGMALFLAACSSNDSNINTLNNSKTYEPEQQATNAIAYRNVNMSNDVNMSNS
CCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCHHHHHCCHHEECCCCCCCCCCCCC
AAANCANAGGILANTRQLHGGSVGMCQLPDGKRCDEEALLRGACPVR
CCCCCCCCCCEECCCEECCCCCEEEEECCCCCCCCHHHHHCCCCCCC
>Mature Secondary Structure
MRIFQGVVCGMALFLAACSSNDSNINTLNNSKTYEPEQQATNAIAYRNVNMSNDVNMSNS
CCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCHHHHHCCHHEECCCCCCCCCCCCC
AAANCANAGGILANTRQLHGGSVGMCQLPDGKRCDEEALLRGACPVR
CCCCCCCCCCEECCCEECCCCCEEEEECCCCCCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]