| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is 170023416
Identifier: 170023416
GI number: 170023416
Start: 1308241
End: 1308972
Strand: Direct
Name: 170023416
Synonym: YPK_1170
Alternate gene names: NA
Gene position: 1308241-1308972 (Clockwise)
Preceding gene: 170023415
Following gene: 170023417
Centisome position: 27.9
GC content: 50.55
Gene sequence:
>732_bases TTGGAACAAACGGTAAATCTTTGGCCGCTGATCGGTATTGCGGCGATTGTAATTGGATTTTTATTGCGGATAAACGCGGT ATTAGTGGTGATCACCGCCGGGATTATTACTGGTCTGGCCGCGTTGATGCCAATAGCCACTATTTTAGAAAATCTGGGTC AGGGATTTCTTAACACCCGTAATCTGCCCTTGATTCTGTTACTGCCCTTGGCGGTCATTGGTTTGCTTGAACGTCATGGT TTGAAAGAGCGGGCGCAGGCATGGATTATGCAAATTAAAAGTGCGACATCAGGCCGCTTATTAATTGTTTACCTCTTTGT GCGTGAAGTGACGGCTGCTATGGGGTTAACCAGCCTTGGTGGTCACCCCCAGATGGTTCGGCCCTTATTGGCTCCAATGG CTGAGGGGGCGGCAGAGAACCGCTATGGCGAATTGCCGGAGAAAGTTCGCTACCGCCTGCGTGCCATGTCAGCGGCAACC GATAACGTGGGGTTGTTCTTTGGCGAGGATATCTTTGTCGCTTTCGGGGCGATTATCTTTATGCACAACTTTATGTTGGA GTCGGGTGGCATTCAGACGGAACCATTGCATATCGCGCTGTGGGGGATCCCAACCGCGATTTGTGCTTTCCTGATCCATG CCTACCGTTTACAGCGGTTAGATAAACAACTTGCTGCGGAATTAACGGCGCTGAATCAGTCTGCCCTGGCAGCTCAGGGA GAGGCTAAATGA
Upstream 100 bases:
>100_bases CGTGATAGCGCAATAACCAGCGCCTACCTCGGGCAGAATATATTTATCACTTAAATACGTTTTACATTATTGAAATAGAC TTCAGGGCGGGAGAATTCTC
Downstream 100 bases:
>100_bases TTTTCCAACAACAATACTTATATTGGCTGGCCGGAGTGGTGCTATTGATTGTCGCGGTGATGTCATTTCGTGATAAAGCC AATCCAAGGCGCTTAACCAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 243; Mature: 243
Protein sequence:
>243_residues MEQTVNLWPLIGIAAIVIGFLLRINAVLVVITAGIITGLAALMPIATILENLGQGFLNTRNLPLILLLPLAVIGLLERHG LKERAQAWIMQIKSATSGRLLIVYLFVREVTAAMGLTSLGGHPQMVRPLLAPMAEGAAENRYGELPEKVRYRLRAMSAAT DNVGLFFGEDIFVAFGAIIFMHNFMLESGGIQTEPLHIALWGIPTAICAFLIHAYRLQRLDKQLAAELTALNQSALAAQG EAK
Sequences:
>Translated_243_residues MEQTVNLWPLIGIAAIVIGFLLRINAVLVVITAGIITGLAALMPIATILENLGQGFLNTRNLPLILLLPLAVIGLLERHG LKERAQAWIMQIKSATSGRLLIVYLFVREVTAAMGLTSLGGHPQMVRPLLAPMAEGAAENRYGELPEKVRYRLRAMSAAT DNVGLFFGEDIFVAFGAIIFMHNFMLESGGIQTEPLHIALWGIPTAICAFLIHAYRLQRLDKQLAAELTALNQSALAAQG EAK >Mature_243_residues MEQTVNLWPLIGIAAIVIGFLLRINAVLVVITAGIITGLAALMPIATILENLGQGFLNTRNLPLILLLPLAVIGLLERHG LKERAQAWIMQIKSATSGRLLIVYLFVREVTAAMGLTSLGGHPQMVRPLLAPMAEGAAENRYGELPEKVRYRLRAMSAAT DNVGLFFGEDIFVAFGAIIFMHNFMLESGGIQTEPLHIALWGIPTAICAFLIHAYRLQRLDKQLAAELTALNQSALAAQG EAK
Specific function: Unknown
COG id: COG3819
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26359; Mature: 26359
Theoretical pI: Translated: 8.49; Mature: 8.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEQTVNLWPLIGIAAIVIGFLLRINAVLVVITAGIITGLAALMPIATILENLGQGFLNTR CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCC NLPLILLLPLAVIGLLERHGLKERAQAWIMQIKSATSGRLLIVYLFVREVTAAMGLTSLG CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC GHPQMVRPLLAPMAEGAAENRYGELPEKVRYRLRAMSAATDNVGLFFGEDIFVAFGAIIF CCHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHH MHNFMLESGGIQTEPLHIALWGIPTAICAFLIHAYRLQRLDKQLAAELTALNQSALAAQG HHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC EAK CCC >Mature Secondary Structure MEQTVNLWPLIGIAAIVIGFLLRINAVLVVITAGIITGLAALMPIATILENLGQGFLNTR CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCC NLPLILLLPLAVIGLLERHGLKERAQAWIMQIKSATSGRLLIVYLFVREVTAAMGLTSLG CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC GHPQMVRPLLAPMAEGAAENRYGELPEKVRYRLRAMSAATDNVGLFFGEDIFVAFGAIIF CCHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHH MHNFMLESGGIQTEPLHIALWGIPTAICAFLIHAYRLQRLDKQLAAELTALNQSALAAQG HHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC EAK CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA