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The map label for this gene is traC [H]

Identifier: 170023194

GI number: 170023194

Start: 1062998

End: 1063819

Strand: Reverse

Name: traC [H]

Synonym: YPK_0945

Alternate gene names: 170023194

Gene position: 1063819-1062998 (Counterclockwise)

Preceding gene: 170023197

Following gene: 170023191

Centisome position: 22.69

GC content: 54.01

Gene sequence:

>822_bases
ATGAATCAATTTATTACCGAGGTTGCGGCACAGGCGCGCGGAAAATGGGGCTTTATTCTGGATGCGCTGGCGATCAGCCA
CAGCAAACAGCACTCCCCCTGTCCGGCCTGTGGCGGCAAAGACCGCTTTCGTTTTGATGACCGTCAGGGCGCGGGAACGT
GGTTTTGTAATCAGTGCGAACCACAATCCGGCGACGGTTTGGATCTGGTTAAAAATGTCCGACAATGCTCGCTAACTGAA
GCCGCGCAGCTGGTGGCCGATATTCTCGGTGTCTCACCCAAATCTAAAGCGCCGGATCTGGCCTCTCTCATGGCGAAAAC
CACGCCAGGGGAATCTCGCTATTTAATTAATAAAGGTCTGAACAGCCATAAATTACCTATTCTGCCGGATGGTTCGTTAT
TGCTGATATTGCAGAATATGGCGGGGGACTGCACCGGCGCACAGATTATCCGGCCCGATGGCACGAAAAAGCTGATCGCC
GGTAGCCGCAAAAAAGGCGCGTTTATCCCGCTCAAACCGCTGCCGGAACAGGCTGAAACCGTGGTGCTGGCAGAGGGTTA
CGCCACCGCGCAAAGTCTGGAGTTATTGCTACCGGCCGCCGTGATTATCGCCGCCATCGATGCCGGAAATCTGTTGCCGG
TGGCACAGGCATTCCGTATCTATTGGCCTGCCGCGAAAATCATCATTGCGGCGGATAATGATATCAATCCACAAGACACA
GCCAATGTTGGCCAGTTGTCCGCAGAAAAAGCCGCCAACGCGGTCAATGGTTGGGTGACATTGCCGCCAACCCCGCATAA
AGCCGATTGGGATGATTATTGA

Upstream 100 bases:

>100_bases
ATAAATTGTATTTATAAAATTTAAAACATTGCTATGGGTGTTAAAAATGGCCCGAAAATGGATTTTATCCGCCGGAAACC
GGGCGTAAAAAGGAAAAGTC

Downstream 100 bases:

>100_bases
GTAACGCGCTGTGCATCCCGCCAATGTAATCCGGCAGGCCGTAGACTTGCTGTTGTGGATCATACAGCTTACGAAATATC
ACATCGCTCGGCGGGTAAAT

Product: P4 alpha zinc-binding domain-containing protein

Products: NA

Alternate protein names: Replication primase [H]

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MNQFITEVAAQARGKWGFILDALAISHSKQHSPCPACGGKDRFRFDDRQGAGTWFCNQCEPQSGDGLDLVKNVRQCSLTE
AAQLVADILGVSPKSKAPDLASLMAKTTPGESRYLINKGLNSHKLPILPDGSLLLILQNMAGDCTGAQIIRPDGTKKLIA
GSRKKGAFIPLKPLPEQAETVVLAEGYATAQSLELLLPAAVIIAAIDAGNLLPVAQAFRIYWPAAKIIIAADNDINPQDT
ANVGQLSAEKAANAVNGWVTLPPTPHKADWDDY

Sequences:

>Translated_273_residues
MNQFITEVAAQARGKWGFILDALAISHSKQHSPCPACGGKDRFRFDDRQGAGTWFCNQCEPQSGDGLDLVKNVRQCSLTE
AAQLVADILGVSPKSKAPDLASLMAKTTPGESRYLINKGLNSHKLPILPDGSLLLILQNMAGDCTGAQIIRPDGTKKLIA
GSRKKGAFIPLKPLPEQAETVVLAEGYATAQSLELLLPAAVIIAAIDAGNLLPVAQAFRIYWPAAKIIIAADNDINPQDT
ANVGQLSAEKAANAVNGWVTLPPTPHKADWDDY
>Mature_273_residues
MNQFITEVAAQARGKWGFILDALAISHSKQHSPCPACGGKDRFRFDDRQGAGTWFCNQCEPQSGDGLDLVKNVRQCSLTE
AAQLVADILGVSPKSKAPDLASLMAKTTPGESRYLINKGLNSHKLPILPDGSLLLILQNMAGDCTGAQIIRPDGTKKLIA
GSRKKGAFIPLKPLPEQAETVVLAEGYATAQSLELLLPAAVIIAAIDAGNLLPVAQAFRIYWPAAKIIIAADNDINPQDT
ANVGQLSAEKAANAVNGWVTLPPTPHKADWDDY

Specific function: Required for autonomous replication in E.coli. Transferred into the recipient cell during bacterial conjugation. Catalyzes the synthesis of short oligoribonucleotide primers with CpA or pCpA at their 5'-termini on a single stranded template DNA [H]

COG id: COG4643

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013610
- InterPro:   IPR006171 [H]

Pfam domain/function: PF08401 DUF1738; PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 29101; Mature: 29101

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQFITEVAAQARGKWGFILDALAISHSKQHSPCPACGGKDRFRFDDRQGAGTWFCNQCE
CCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCEEECCCC
PQSGDGLDLVKNVRQCSLTEAAQLVADILGVSPKSKAPDLASLMAKTTPGESRYLINKGL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCEEEEECCC
NSHKLPILPDGSLLLILQNMAGDCTGAQIIRPDGTKKLIAGSRKKGAFIPLKPLPEQAET
CCCCCCCCCCCCEEEEEECCCCCCCCCEEECCCCCHHHHCCCCCCCCEECCCCCCCCCCE
VVLAEGYATAQSLELLLPAAVIIAAIDAGNLLPVAQAFRIYWPAAKIIIAADNDINPQDT
EEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHEEECEEEEEEEECCCCCCCCC
ANVGQLSAEKAANAVNGWVTLPPTPHKADWDDY
CCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCC
>Mature Secondary Structure
MNQFITEVAAQARGKWGFILDALAISHSKQHSPCPACGGKDRFRFDDRQGAGTWFCNQCE
CCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCEEECCCC
PQSGDGLDLVKNVRQCSLTEAAQLVADILGVSPKSKAPDLASLMAKTTPGESRYLINKGL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCEEEEECCC
NSHKLPILPDGSLLLILQNMAGDCTGAQIIRPDGTKKLIAGSRKKGAFIPLKPLPEQAET
CCCCCCCCCCCCEEEEEECCCCCCCCCEEECCCCCHHHHCCCCCCCCEECCCCCCCCCCE
VVLAEGYATAQSLELLLPAAVIIAAIDAGNLLPVAQAFRIYWPAAKIIIAADNDINPQDT
EEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHEEECEEEEEEEECCCCCCCCC
ANVGQLSAEKAANAVNGWVTLPPTPHKADWDDY
CCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1818755 [H]