Click here to switch to the map view.

The map label for this gene is recJ [H]

Identifier: 170023171

GI number: 170023171

Start: 1039934

End: 1041667

Strand: Direct

Name: recJ [H]

Synonym: YPK_0922

Alternate gene names: 170023171

Gene position: 1039934-1041667 (Clockwise)

Preceding gene: 170023170

Following gene: 170023172

Centisome position: 22.18

GC content: 52.77

Gene sequence:

>1734_bases
GTGACGTTGAAAACCCAACTTCGCCGCCGTGAGGCGGCAGATGACAGCCATTTACCTGCGCAATTGCCCCCGTTACTGCG
TCGTCTCTATGCTAGCCGTGGCGTAAAGGATGCGCAGGAGTTGGAGAGGGGCGTGAAAGGCCTACTGGCATGGCAAAAAC
TGGATGGTATTGACGCTGGCGTCACCTTATTACAACAAGCCCTGGCTGATCGGCGGCGTATTGTCATTGTCGGCGATTTT
GATGCTGACGGCGCGACCAGTACCGCGTTGGCGGTGCTGGCTTTGCGCAGTATGGGCGGCAGTAACCTTGATTATCTGGT
ACCTAACCGATTTGAAGATGGTTATGGGCTTAGCCCCGAAGTGGTTGAACAAGTTGCGGCCAGAGGGGCAGAGCTGATTG
TTACTGTGGATAACGGTATTTCCTCTCATGCCGGGGTCGATCTGGCTCATGCCAAAGGTATTCAGGTTCTGGTGACGGAC
CACCATTTGCCGGGCGAAACATTACCCGCGGCGGATGCCATCATTAACCCAAATCTGGCCGGTTGCGATTTTTTATCCAA
GTCATTGGCGGGGGTCGGTGTCACTTTCTATTTGATGCTGGCGCTGCGCGCCCGTCTCAGGGAATGTGGTTGGTTTGAAC
AACGTACCTTAGCGGTCCCTAATCTGGCTGAACTGTTGGATTTGGTGGCATTGGGTACGGTGGCAGATGTGGTGCCGTTG
GATGCCAATAACCGTATTTTGGTCCATCAAGGGTTAAGTCGTATTCGTGCGGGGAAATGCCGTCCAGGAATTCGCGCATT
ATTGGAGGTCGCTAACCGTGATGCGCGCCAATTGGCCGCGAACGATTTAGGCTTTTCTCTTGGCCCACGGTTGAATGCGG
CGGGGCGTTTAGATGATATGTCCATCGGGGTGGCGCTACTGCTGAGTGACGATATTGCTCAGGCGCGAGCACTGGCAATC
GATCTTGACACCTTGAATAAAACCCGGCGCGAGATAGAACAGGGTATGCAGGTTGAAGCTTTGCAACTGTGTGACCAGTT
GGAGCGCACCAGCAGTGAATTACCTTACGGTATCGCGATGTACCATCCAGAATGGCATCAGGGCGTTGTGGGTATTTTGG
CTTCACGCATCAAAGAACGCTTTCACCGCCCGGTTATCGCTTTTGCCCCAGCGGGAGAAGGGTTATTGAAAGGGTCGGGT
CGTAGCGTTGCGGGTTTGCATATGCGTGATGCCCTTGAGCGTCTGGACACTCTGAACCCAGGGTTAATACTGAAGTTTGG
TGGGCACGCCATGGCGGCAGGGTTATCGCTGGAGGAAGGTAAATTCGATGAATTCCGCCAGCGTTTTGCAGATTTAGTCG
GTGAATGGATGGATGCTTCGCAATTGGAAGGCGTTATTTGGTCTGATGGCGAACTGAACGGTGCTGAGTTATCACTGGAG
ACCGCAGAGCTATTGCGCGACGGTGGTCCATGGGGGCAATCTTTCCCTGAGCCGACCTTTGATGGCAAATTCCGTATCTT
ACAGCAGCGCTTAGTGGGTGAGCGTCACCTGAAACTCATGGTAGAGCCGCTGAATGGCGGGCCTTTGTTAGATGGAATTG
CCTTTAATGTCGATACCACTTTGTGGCCGGATAGCAGCGTGCGAGAAGTTAAATTGGCCTATAAACTGGATATTAATGAA
TATCGTGGTAATCGTAGTGTTCAGTTGCTGGTTCAACACTTGTGGCCTTATTAG

Upstream 100 bases:

>100_bases
GCAAAATGGCACTATTGTCCCAGGCTATCAGGGACCGAAAGAAATGCTACAGATGCTTAATGCGCATCAGGCTTCACTAA
AAGCGGGTGGTTGATTACCT

Downstream 100 bases:

>100_bases
CGCGTTAGCCGATTACTCAGCCTTCTTCCTTGCGCGGCTAACACCGTTGCAACGCCAAGGAAGAAGGGGATGGCGCTACA
AATATAATCAACCTGCTATA

Product: ssDNA exonuclease RecJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 577; Mature: 576

Protein sequence:

>577_residues
MTLKTQLRRREAADDSHLPAQLPPLLRRLYASRGVKDAQELERGVKGLLAWQKLDGIDAGVTLLQQALADRRRIVIVGDF
DADGATSTALAVLALRSMGGSNLDYLVPNRFEDGYGLSPEVVEQVAARGAELIVTVDNGISSHAGVDLAHAKGIQVLVTD
HHLPGETLPAADAIINPNLAGCDFLSKSLAGVGVTFYLMLALRARLRECGWFEQRTLAVPNLAELLDLVALGTVADVVPL
DANNRILVHQGLSRIRAGKCRPGIRALLEVANRDARQLAANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARALAI
DLDTLNKTRREIEQGMQVEALQLCDQLERTSSELPYGIAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGEGLLKGSG
RSVAGLHMRDALERLDTLNPGLILKFGGHAMAAGLSLEEGKFDEFRQRFADLVGEWMDASQLEGVIWSDGELNGAELSLE
TAELLRDGGPWGQSFPEPTFDGKFRILQQRLVGERHLKLMVEPLNGGPLLDGIAFNVDTTLWPDSSVREVKLAYKLDINE
YRGNRSVQLLVQHLWPY

Sequences:

>Translated_577_residues
MTLKTQLRRREAADDSHLPAQLPPLLRRLYASRGVKDAQELERGVKGLLAWQKLDGIDAGVTLLQQALADRRRIVIVGDF
DADGATSTALAVLALRSMGGSNLDYLVPNRFEDGYGLSPEVVEQVAARGAELIVTVDNGISSHAGVDLAHAKGIQVLVTD
HHLPGETLPAADAIINPNLAGCDFLSKSLAGVGVTFYLMLALRARLRECGWFEQRTLAVPNLAELLDLVALGTVADVVPL
DANNRILVHQGLSRIRAGKCRPGIRALLEVANRDARQLAANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARALAI
DLDTLNKTRREIEQGMQVEALQLCDQLERTSSELPYGIAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGEGLLKGSG
RSVAGLHMRDALERLDTLNPGLILKFGGHAMAAGLSLEEGKFDEFRQRFADLVGEWMDASQLEGVIWSDGELNGAELSLE
TAELLRDGGPWGQSFPEPTFDGKFRILQQRLVGERHLKLMVEPLNGGPLLDGIAFNVDTTLWPDSSVREVKLAYKLDINE
YRGNRSVQLLVQHLWPY
>Mature_576_residues
TLKTQLRRREAADDSHLPAQLPPLLRRLYASRGVKDAQELERGVKGLLAWQKLDGIDAGVTLLQQALADRRRIVIVGDFD
ADGATSTALAVLALRSMGGSNLDYLVPNRFEDGYGLSPEVVEQVAARGAELIVTVDNGISSHAGVDLAHAKGIQVLVTDH
HLPGETLPAADAIINPNLAGCDFLSKSLAGVGVTFYLMLALRARLRECGWFEQRTLAVPNLAELLDLVALGTVADVVPLD
ANNRILVHQGLSRIRAGKCRPGIRALLEVANRDARQLAANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARALAID
LDTLNKTRREIEQGMQVEALQLCDQLERTSSELPYGIAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGEGLLKGSGR
SVAGLHMRDALERLDTLNPGLILKFGGHAMAAGLSLEEGKFDEFRQRFADLVGEWMDASQLEGVIWSDGELNGAELSLET
AELLRDGGPWGQSFPEPTFDGKFRILQQRLVGERHLKLMVEPLNGGPLLDGIAFNVDTTLWPDSSVREVKLAYKLDINEY
RGNRSVQLLVQHLWPY

Specific function: Single-stranded-DNA-specific exonuclease. Required for many types of recombinational events, although the stringency of the requirement for recJ appears to vary with the type of recombinational event monitored and the other recombination gene products whi

COG id: COG0608

COG function: function code L; Single-stranded DNA-specific exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recJ family [H]

Homologues:

Organism=Escherichia coli, GI1789259, Length=576, Percent_Identity=75.1736111111111, Blast_Score=897, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003156
- InterPro:   IPR001667
- InterPro:   IPR004610 [H]

Pfam domain/function: PF01368 DHH; PF02272 DHHA1 [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 62971; Mature: 62840

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLKTQLRRREAADDSHLPAQLPPLLRRLYASRGVKDAQELERGVKGLLAWQKLDGIDAG
CCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHH
VTLLQQALADRRRIVIVGDFDADGATSTALAVLALRSMGGSNLDYLVPNRFEDGYGLSPE
HHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
VVEQVAARGAELIVTVDNGISSHAGVDLAHAKGIQVLVTDHHLPGETLPAADAIINPNLA
HHHHHHHCCCEEEEEECCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCHHHCCCCCC
GCDFLSKSLAGVGVTFYLMLALRARLRECGWFEQRTLAVPNLAELLDLVALGTVADVVPL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHEEEC
DANNRILVHQGLSRIRAGKCRPGIRALLEVANRDARQLAANDLGFSLGPRLNAAGRLDDM
CCCCEEEHHHCHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCH
SIGVALLLSDDIAQARALAIDLDTLNKTRREIEQGMQVEALQLCDQLERTSSELPYGIAM
HHCEEEEECHHHHHHHEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEE
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGEGLLKGSGRSVAGLHMRDALERLDTLNP
ECCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEECHHHHHHHHHHHCCCC
GLILKFGGHAMAAGLSLEEGKFDEFRQRFADLVGEWMDASQLEGVIWSDGELNGAELSLE
CEEEEECCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHCCCEEECCCCCCCCEEEHH
TAELLRDGGPWGQSFPEPTFDGKFRILQQRLVGERHLKLMVEPLNGGPLLDGIAFNVDTT
HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCEECCEEEECCCE
LWPDSSVREVKLAYKLDINEYRGNRSVQLLVQHLWPY
ECCCCCCCEEEEEEEEEHHHHCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
TLKTQLRRREAADDSHLPAQLPPLLRRLYASRGVKDAQELERGVKGLLAWQKLDGIDAG
CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHH
VTLLQQALADRRRIVIVGDFDADGATSTALAVLALRSMGGSNLDYLVPNRFEDGYGLSPE
HHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
VVEQVAARGAELIVTVDNGISSHAGVDLAHAKGIQVLVTDHHLPGETLPAADAIINPNLA
HHHHHHHCCCEEEEEECCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCHHHCCCCCC
GCDFLSKSLAGVGVTFYLMLALRARLRECGWFEQRTLAVPNLAELLDLVALGTVADVVPL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHEEEC
DANNRILVHQGLSRIRAGKCRPGIRALLEVANRDARQLAANDLGFSLGPRLNAAGRLDDM
CCCCEEEHHHCHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCH
SIGVALLLSDDIAQARALAIDLDTLNKTRREIEQGMQVEALQLCDQLERTSSELPYGIAM
HHCEEEEECHHHHHHHEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEE
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGEGLLKGSGRSVAGLHMRDALERLDTLNP
ECCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEECHHHHHHHHHHHCCCC
GLILKFGGHAMAAGLSLEEGKFDEFRQRFADLVGEWMDASQLEGVIWSDGELNGAELSLE
CEEEEECCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHCCCEEECCCCCCCCEEEHH
TAELLRDGGPWGQSFPEPTFDGKFRILQQRLVGERHLKLMVEPLNGGPLLDGIAFNVDTT
HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCEECCEEEECCCE
LWPDSSVREVKLAYKLDINEYRGNRSVQLLVQHLWPY
ECCCCCCCEEEEEEEEEHHHHCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8168497 [H]