Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 170023063

GI number: 170023063

Start: 930123

End: 931106

Strand: Direct

Name: rbsC [H]

Synonym: YPK_0814

Alternate gene names: 170023063

Gene position: 930123-931106 (Clockwise)

Preceding gene: 170023062

Following gene: 170023070

Centisome position: 19.83

GC content: 47.36

Gene sequence:

>984_bases
ATGGGATCCATAGTCAAAGAGGTTGATGACGTCAGGCAGGTGTCATTGATGAAGAGAACGGCGCTGTTCCTGCTAGACAA
CTCAACGACCGTTGTTTTTATTGTTATGTTGATTGCAGCAGGTTTCTTCTCTGATCGATTTTACAGTGGGGATAATATTA
CCAATGTGTTGCGCCAAAGTGTTCCGCTCGGTCTGGCGGCATTGGGGATGTTGTTCGTCATTCTGACTGGTGGTATTGAT
CTGTCCATTGGCTCCATTATGGCATTTGTCTCGGTCTTGGTAGGGCTGTTGATCCCAGAATTTGGGTTATGGCCAGCGTT
GATTGCGGGTGTCGGTATTGCCACTTTGATGGGGGCATTCTCCGGTTTTTTGGTCACTTGGTTTAATATCGCGCCTTTTA
TTGCCACATTGGCGATGATGACCATTGCGCGAGGCGTGGCGCTGATTATTTCTAAGGGCCAACCGGTATTTATTGATAAC
GATGCTTTCGTAAACTTTGGTACGGGCTATTTCCTTGGGATCCCTCTGCCTGTCTATGTTTTCCTCGGTTTTGCCATTAT
TTGCCAATTGGTATACAAAAATTCGGTCTTTGGTCGGTTGGTGGTGTCGATAGGCTCTAACGAAACTGCGACTCGCTTCG
CAGGTATTCGGGTCAATAACTATAAGTTAGCCGTTTATGCTATTAGCGCATTTGCCTGTGGTGCGGCGGGTATCATTTCT
GCCACCCGAACGGGGGTGGGATCACCGGTGCTGTCTATTGGATTTGAACTGGATGTCATTGCGGCGGTAGTCGTTGGCGG
GGCCAGTCTGGCGGGGGGCCATGGCAATGTGGTCAATACTATTATTGGCGTATTTATCCTGAGTATAATATCCAATCTAA
TGAATTTAATGAATATTTCCGGCTATAACCAACAGGTGGTCAAAGGGGTTATCATCATCATCGCGGTGATGGTCCAAAGC
CTAAAATCGCGGAGTAAAGCCTGA

Upstream 100 bases:

>100_bases
TGCAACACGATGAGATTTCAGAAGAAAATATCATGCGCTATGCCATTCCCAAGCGCGAGACAATATGACATCAAGACAAT
ATTACATAAAGGATAAGGTA

Downstream 100 bases:

>100_bases
TTTTTGGGGCTAGGTCAGGACGTTGATCTAAACAGAGGGCAGCAGTAACAATGCCCTCTGTAGTAACATTACCCTCTGTA
GTAACATTACCCTCTGTAGT

Product: monosaccharide-transporting ATPase

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MGSIVKEVDDVRQVSLMKRTALFLLDNSTTVVFIVMLIAAGFFSDRFYSGDNITNVLRQSVPLGLAALGMLFVILTGGID
LSIGSIMAFVSVLVGLLIPEFGLWPALIAGVGIATLMGAFSGFLVTWFNIAPFIATLAMMTIARGVALIISKGQPVFIDN
DAFVNFGTGYFLGIPLPVYVFLGFAIICQLVYKNSVFGRLVVSIGSNETATRFAGIRVNNYKLAVYAISAFACGAAGIIS
ATRTGVGSPVLSIGFELDVIAAVVVGGASLAGGHGNVVNTIIGVFILSIISNLMNLMNISGYNQQVVKGVIIIIAVMVQS
LKSRSKA

Sequences:

>Translated_327_residues
MGSIVKEVDDVRQVSLMKRTALFLLDNSTTVVFIVMLIAAGFFSDRFYSGDNITNVLRQSVPLGLAALGMLFVILTGGID
LSIGSIMAFVSVLVGLLIPEFGLWPALIAGVGIATLMGAFSGFLVTWFNIAPFIATLAMMTIARGVALIISKGQPVFIDN
DAFVNFGTGYFLGIPLPVYVFLGFAIICQLVYKNSVFGRLVVSIGSNETATRFAGIRVNNYKLAVYAISAFACGAAGIIS
ATRTGVGSPVLSIGFELDVIAAVVVGGASLAGGHGNVVNTIIGVFILSIISNLMNLMNISGYNQQVVKGVIIIIAVMVQS
LKSRSKA
>Mature_326_residues
GSIVKEVDDVRQVSLMKRTALFLLDNSTTVVFIVMLIAAGFFSDRFYSGDNITNVLRQSVPLGLAALGMLFVILTGGIDL
SIGSIMAFVSVLVGLLIPEFGLWPALIAGVGIATLMGAFSGFLVTWFNIAPFIATLAMMTIARGVALIISKGQPVFIDND
AFVNFGTGYFLGIPLPVYVFLGFAIICQLVYKNSVFGRLVVSIGSNETATRFAGIRVNNYKLAVYAISAFACGAAGIISA
TRTGVGSPVLSIGFELDVIAAVVVGGASLAGGHGNVVNTIIGVFILSIISNLMNLMNISGYNQQVVKGVIIIIAVMVQSL
KSRSKA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=309, Percent_Identity=36.8932038834951, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI145693152, Length=297, Percent_Identity=37.7104377104377, Blast_Score=174, Evalue=6e-45,
Organism=Escherichia coli, GI1788896, Length=319, Percent_Identity=34.1692789968652, Blast_Score=166, Evalue=1e-42,
Organism=Escherichia coli, GI1790524, Length=298, Percent_Identity=36.241610738255, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI87082395, Length=285, Percent_Identity=34.0350877192982, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1789992, Length=343, Percent_Identity=30.9037900874636, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI145693214, Length=237, Percent_Identity=33.7552742616034, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1787793, Length=279, Percent_Identity=27.5985663082437, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1788471, Length=334, Percent_Identity=29.940119760479, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1787794, Length=280, Percent_Identity=25.7142857142857, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34365; Mature: 34234

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSIVKEVDDVRQVSLMKRTALFLLDNSTTVVFIVMLIAAGFFSDRFYSGDNITNVLRQS
CCCHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
VPLGLAALGMLFVILTGGIDLSIGSIMAFVSVLVGLLIPEFGLWPALIAGVGIATLMGAF
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
SGFLVTWFNIAPFIATLAMMTIARGVALIISKGQPVFIDNDAFVNFGTGYFLGIPLPVYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEEECCCCEEECCCCEEECCCHHHHH
FLGFAIICQLVYKNSVFGRLVVSIGSNETATRFAGIRVNNYKLAVYAISAFACGAAGIIS
HHHHHHHHHHHHHCCHHHHEEEEECCCCCHHHEEEEEECCEEEEEEEHHHHHCCHHHHHH
ATRTGVGSPVLSIGFELDVIAAVVVGGASLAGGHGNVVNTIIGVFILSIISNLMNLMNIS
HHHCCCCCCHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
GYNQQVVKGVIIIIAVMVQSLKSRSKA
CCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GSIVKEVDDVRQVSLMKRTALFLLDNSTTVVFIVMLIAAGFFSDRFYSGDNITNVLRQS
CCHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
VPLGLAALGMLFVILTGGIDLSIGSIMAFVSVLVGLLIPEFGLWPALIAGVGIATLMGAF
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
SGFLVTWFNIAPFIATLAMMTIARGVALIISKGQPVFIDNDAFVNFGTGYFLGIPLPVYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEEECCCCEEECCCCEEECCCHHHHH
FLGFAIICQLVYKNSVFGRLVVSIGSNETATRFAGIRVNNYKLAVYAISAFACGAAGIIS
HHHHHHHHHHHHHCCHHHHEEEEECCCCCHHHEEEEEECCEEEEEEEHHHHHCCHHHHHH
ATRTGVGSPVLSIGFELDVIAAVVVGGASLAGGHGNVVNTIIGVFILSIISNLMNLMNIS
HHHCCCCCCHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
GYNQQVVKGVIIIIAVMVQSLKSRSKA
CCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]