| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
Click here to switch to the map view.
The map label for this gene is chiD [H]
Identifier: 170022942
GI number: 170022942
Start: 752537
End: 753952
Strand: Reverse
Name: chiD [H]
Synonym: YPK_0693
Alternate gene names: 170022942
Gene position: 753952-752537 (Counterclockwise)
Preceding gene: 170022947
Following gene: 170022941
Centisome position: 16.08
GC content: 41.88
Gene sequence:
>1416_bases ATGTCCAAAAAAAATGCAAAAAAATCACCGGTCCAACGAGTCGATATTAAAGATAAAAAAATATTTATGGGGTTCTGGCA CAATTGGACATCCTATCCTAGAAATGGCTATCAGTATGGCCAGTCTACAAATATACCGTTGGCCGATATTCCTAAAGAGT TCAATGTTATTGCCGTCGCCTTTATGAAGGGAAGCGGTATCCCAACATTTAGACCGTATAACGGGTCGGATGAGCAGTTC CGCACACAAGTGGATAAACTGCATAGTGAGGGCCGCTCAGTACTGATCTCCTTAGGGGGCGCTGATGCAGAGATCTCATT AACATCCCAAGACGAGGCGGCCTTTGTCGCAGAGATTAAACGATTAGTTGATGTCTATGGTTTTGATGGTTTAGATATCG ATTTAGAGCAGGCGGCAATTAGTTATAAAGAAAACTCGACGGTGATCCCTCGGGCATTAAAAACAGTAAAAGACTATTAC GCTAACTTAGGCCAACACTTTATTATTAGTATGGCACCCGAATTCCCTCACTTAAGAATTAATGAGGCATATGTTCCTTA TATTAAGGCGTTAGAGGGATATTATGACTTTATTGCACCACAATATTATAATCAGTTGGGTGATGGCGTCCACACGGATA GCGGAGAGTTTATCGCTCAAAGTGATAATGAGCGAAAAGAAGATTTTCTTTACTACTTAACTAAAAATTTGGTTTCTAGT TCTCAAAAATTTATTAATATCCCAGCAGATAAATTTGTTATGGGGTTACCGGCAAATAATGACGCGGCAAATAATGGCTA TGTCATTGATAAAAAAGATGTGCATAACGCCTTCGCCAGACTGGATGCCGCAGGTTTATCCATTCGAGGCCTGATGACCT GGTCAATCGACTGGGACAACGGTAAAGATGTCCAAGGGAAAAGTTATAATTGGGAGTTTAAAACACGCTACGCCTCCCTG GGTAATAATGATGATGGCAGCAGTAATAATAATCTCCCATTGGCCCCCTACAACCTTATTCAAACTTCAAAAGCGGCGAA CAGCCTTGAATTATCTTGGCAGCATACGCTTAATGTCAATGCTATCAGCTATTACTCCATTTTCCGTGATGGCAATAAAG TAGGGACCTCGACGAATACAACCTTTACAGATACCGGGCTAGAACCCAATAAACAATATATCTATAAAGTGAGCGCTACC GACTCACAAGGGCAAATTTCTGATTTCAGTACGGTGGTAACGGCAACGACGTTAACGACCAACCTTTCAGTCTGGGAGAA AGGTCAATGGTACAACGATAATGATTCGGTACGACATAACGCAGAAAACTATATTTGCGTCATGCAACACACCTCAAACG CATTCTGGTCACCAGATCAAGCCACCACATTATGGCAGCTCGTCGTACAGCGCTAA
Upstream 100 bases:
>100_bases CATACTCTGAGGTTTACGTTCAAAAACTGACGGGGGCCATCATGGTAAGGATTAAACGACATACACTCAACGCATTACTG ATGATAATGAGGAAATAGTT
Downstream 100 bases:
>100_bases ATTTCGCGGGTTCGGTACCTTATACCCTAAAGAATTCCACTGAAAACATTAATATTATTAAGGAATATATGATGAAATAC AGAACGCCCAATATTATCAG
Product: glycoside hydrolase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 471; Mature: 470
Protein sequence:
>471_residues MSKKNAKKSPVQRVDIKDKKIFMGFWHNWTSYPRNGYQYGQSTNIPLADIPKEFNVIAVAFMKGSGIPTFRPYNGSDEQF RTQVDKLHSEGRSVLISLGGADAEISLTSQDEAAFVAEIKRLVDVYGFDGLDIDLEQAAISYKENSTVIPRALKTVKDYY ANLGQHFIISMAPEFPHLRINEAYVPYIKALEGYYDFIAPQYYNQLGDGVHTDSGEFIAQSDNERKEDFLYYLTKNLVSS SQKFINIPADKFVMGLPANNDAANNGYVIDKKDVHNAFARLDAAGLSIRGLMTWSIDWDNGKDVQGKSYNWEFKTRYASL GNNDDGSSNNNLPLAPYNLIQTSKAANSLELSWQHTLNVNAISYYSIFRDGNKVGTSTNTTFTDTGLEPNKQYIYKVSAT DSQGQISDFSTVVTATTLTTNLSVWEKGQWYNDNDSVRHNAENYICVMQHTSNAFWSPDQATTLWQLVVQR
Sequences:
>Translated_471_residues MSKKNAKKSPVQRVDIKDKKIFMGFWHNWTSYPRNGYQYGQSTNIPLADIPKEFNVIAVAFMKGSGIPTFRPYNGSDEQF RTQVDKLHSEGRSVLISLGGADAEISLTSQDEAAFVAEIKRLVDVYGFDGLDIDLEQAAISYKENSTVIPRALKTVKDYY ANLGQHFIISMAPEFPHLRINEAYVPYIKALEGYYDFIAPQYYNQLGDGVHTDSGEFIAQSDNERKEDFLYYLTKNLVSS SQKFINIPADKFVMGLPANNDAANNGYVIDKKDVHNAFARLDAAGLSIRGLMTWSIDWDNGKDVQGKSYNWEFKTRYASL GNNDDGSSNNNLPLAPYNLIQTSKAANSLELSWQHTLNVNAISYYSIFRDGNKVGTSTNTTFTDTGLEPNKQYIYKVSAT DSQGQISDFSTVVTATTLTTNLSVWEKGQWYNDNDSVRHNAENYICVMQHTSNAFWSPDQATTLWQLVVQR >Mature_470_residues SKKNAKKSPVQRVDIKDKKIFMGFWHNWTSYPRNGYQYGQSTNIPLADIPKEFNVIAVAFMKGSGIPTFRPYNGSDEQFR TQVDKLHSEGRSVLISLGGADAEISLTSQDEAAFVAEIKRLVDVYGFDGLDIDLEQAAISYKENSTVIPRALKTVKDYYA NLGQHFIISMAPEFPHLRINEAYVPYIKALEGYYDFIAPQYYNQLGDGVHTDSGEFIAQSDNERKEDFLYYLTKNLVSSS QKFINIPADKFVMGLPANNDAANNGYVIDKKDVHNAFARLDAAGLSIRGLMTWSIDWDNGKDVQGKSYNWEFKTRYASLG NNDDGSSNNNLPLAPYNLIQTSKAANSLELSWQHTLNVNAISYYSIFRDGNKVGTSTNTTFTDTGLEPNKQYIYKVSATD SQGQISDFSTVVTATTLTTNLSVWEKGQWYNDNDSVRHNAENYICVMQHTSNAFWSPDQATTLWQLVVQR
Specific function: Unknown
COG id: COG3469
COG function: function code G; Chitinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 fibronectin type-III domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003610 - InterPro: IPR008957 - InterPro: IPR003961 - InterPro: IPR001223 - InterPro: IPR001579 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR013783 - InterPro: IPR015520 [H]
Pfam domain/function: PF02839 CBM_5_12; PF00041 fn3; PF00704 Glyco_hydro_18 [H]
EC number: =3.2.1.14 [H]
Molecular weight: Translated: 53049; Mature: 52918
Theoretical pI: Translated: 5.65; Mature: 5.65
Prosite motif: PS50853 FN3 ; PS01095 CHITINASE_18
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKKNAKKSPVQRVDIKDKKIFMGFWHNWTSYPRNGYQYGQSTNIPLADIPKEFNVIAVA CCCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE FMKGSGIPTFRPYNGSDEQFRTQVDKLHSEGRSVLISLGGADAEISLTSQDEAAFVAEIK EEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCHHHHHHHH RLVDVYGFDGLDIDLEQAAISYKENSTVIPRALKTVKDYYANLGQHFIISMAPEFPHLRI HHHHHHCCCCCCEEHHHHHEEECCCCEEHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEE NEAYVPYIKALEGYYDFIAPQYYNQLGDGVHTDSGEFIAQSDNERKEDFLYYLTKNLVSS CCCHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCC SQKFINIPADKFVMGLPANNDAANNGYVIDKKDVHNAFARLDAAGLSIRGLMTWSIDWDN CCCEEECCHHHEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCEEEEEEEEEEECCC GKDVQGKSYNWEFKTRYASLGNNDDGSSNNNLPLAPYNLIQTSKAANSLELSWQHTLNVN CCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEEEEECC AISYYSIFRDGNKVGTSTNTTFTDTGLEPNKQYIYKVSATDSQGQISDFSTVVTATTLTT EEEEEEEEECCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCHHHHEEEEEEEEE NLSVWEKGQWYNDNDSVRHNAENYICVMQHTSNAFWSPDQATTLWQLVVQR ECEEEECCCCCCCCCCCEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHCC >Mature Secondary Structure SKKNAKKSPVQRVDIKDKKIFMGFWHNWTSYPRNGYQYGQSTNIPLADIPKEFNVIAVA CCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE FMKGSGIPTFRPYNGSDEQFRTQVDKLHSEGRSVLISLGGADAEISLTSQDEAAFVAEIK EEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCHHHHHHHH RLVDVYGFDGLDIDLEQAAISYKENSTVIPRALKTVKDYYANLGQHFIISMAPEFPHLRI HHHHHHCCCCCCEEHHHHHEEECCCCEEHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEE NEAYVPYIKALEGYYDFIAPQYYNQLGDGVHTDSGEFIAQSDNERKEDFLYYLTKNLVSS CCCHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCC SQKFINIPADKFVMGLPANNDAANNGYVIDKKDVHNAFARLDAAGLSIRGLMTWSIDWDN CCCEEECCHHHEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCEEEEEEEEEEECCC GKDVQGKSYNWEFKTRYASLGNNDDGSSNNNLPLAPYNLIQTSKAANSLELSWQHTLNVN CCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEEEEECC AISYYSIFRDGNKVGTSTNTTFTDTGLEPNKQYIYKVSATDSQGQISDFSTVVTATTLTT EEEEEEEEECCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCHHHHEEEEEEEEE NLSVWEKGQWYNDNDSVRHNAENYICVMQHTSNAFWSPDQATTLWQLVVQR ECEEEECCCCCCCCCCCEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1729234 [H]