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The map label for this gene is cspB [H]

Identifier: 170022693

GI number: 170022693

Start: 484200

End: 484412

Strand: Reverse

Name: cspB [H]

Synonym: YPK_0442

Alternate gene names: 170022693

Gene position: 484412-484200 (Counterclockwise)

Preceding gene: 170022694

Following gene: 170022691

Centisome position: 10.33

GC content: 44.13

Gene sequence:

>213_bases
ATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTTGACGCTGGTAAAGGTTTTGGTTTCATCTCTCCGGCTGATGGCAG
CAAAGATGTGTTCGTTCACTTCTCTGCTATCCAGAGCAATGATTTCAAAACCCTGGATGAAGGCCAAAATGTGGAGTTCT
CTATCGAGAACGGCGCTAAAGGCCCTGCAGCGGTAAACGTTATTGCGCTGTAA

Upstream 100 bases:

>100_bases
CTCTTCTCCGTGAAATTCCTTCTAAGTGCCCCATAAGTTCTACCCAAGCCTATCTGGTCGCCTGTGGCGGCAATTAAAAA
TTATTGAAGGAAGTATCTCT

Downstream 100 bases:

>100_bases
CCGTCAATAATATCTCGGTGTGACTTTCAATCGCGATGAAGGCGATAGCCCAAAGCAATAAACTCATACCGAATAAAAAG
AACCTGCCTCCGTGCAGGTT

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSIENGAKGPAAVNVIAL

Sequences:

>Translated_70_residues
MSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSIENGAKGPAAVNVIAL
>Mature_69_residues
SNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSIENGAKGPAAVNVIAL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=82.8571428571429, Blast_Score=120, Evalue=2e-29,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=77.1428571428572, Blast_Score=117, Evalue=1e-28,
Organism=Escherichia coli, GI1787839, Length=68, Percent_Identity=80.8823529411765, Blast_Score=114, Evalue=1e-27,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=74.2857142857143, Blast_Score=109, Evalue=3e-26,
Organism=Escherichia coli, GI1788126, Length=67, Percent_Identity=76.1194029850746, Blast_Score=106, Evalue=3e-25,
Organism=Escherichia coli, GI1786841, Length=68, Percent_Identity=75, Blast_Score=105, Evalue=5e-25,
Organism=Escherichia coli, GI2367112, Length=67, Percent_Identity=53.7313432835821, Blast_Score=72, Evalue=8e-15,
Organism=Escherichia coli, GI1787840, Length=67, Percent_Identity=49.2537313432836, Blast_Score=69, Evalue=4e-14,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=45.3125, Blast_Score=69, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=44.2622950819672, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7452; Mature: 7321

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSIENGAK
CCCCCCEEEEEEECCCCCEEECCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCC
GPAAVNVIAL
CCCEEEEEEC
>Mature Secondary Structure 
SNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSIENGAK
CCCCCEEEEEEECCCCCEEECCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCC
GPAAVNVIAL
CCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA