| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is yrfF [C]
Identifier: 170022439
GI number: 170022439
Start: 229787
End: 231934
Strand: Reverse
Name: yrfF [C]
Synonym: YPK_0178
Alternate gene names: 170022439
Gene position: 231934-229787 (Counterclockwise)
Preceding gene: 170022442
Following gene: 170022438
Centisome position: 4.95
GC content: 48.51
Gene sequence:
>2148_bases ATGAGCACAATAGTTTTAATATTGGCCTTACTGTTGACCAGTCTGATCGCCGTAGGTCTGCTGTGGTGGCTCCGATTCCG CCGCCCTCACCCCATAACAGCAGCGTTGCCGTTTGTTAAACCGACACACCGAAAACTCACGCCAGAAGAGCGAGTGAGTA TCGAAAATTATCTGCGTAATCAGCAAAATAAGCATGGTTTTAACACGCAACCGGCTTTTGATTCCCACGCACTGGCAGCC AGTACCTCATCCACCCCAATGTTGGTGCTCACACCGCAAAGTGATAACGTCTATTCCGTTACCCGCGCCATTACTCGCTA TGGTGTCGCCAGCGATGAGCCAAATAAATGGCGCTATTATCTCGATTCAATAGAAGTTCATCTGCCCTCGGCCTGGGAAC AATATATTACTCAGGATAATGATGTTGAGCTTATCCAAACCCAGACAATCCCGCTGGTGATCTCCCTTAATGGGCATACG CTTAACAATCATCAGTCTGAGAATACCTATCAGCCCATTTTACCTTCAGTATCGAAAAATGCGTCTATTCGCAAAGAAGA TAGCGAACATATTGAGCTGCTTAATATCCGTAAGGAAACCCCGGAAGAATATGCTCTGCATGGCCCCAATGGTTTAAAAG AAGCCTGCGCCATTTGCATAGCTCTATTGTTGCTGTTTTTCGCATTATCCGGGCCGACGGTGACACTACCCTGGCTGGTT ATCGTGGCAGTGTCATTAACCTGTTGGGCGTGTTGGAACCTCTTCCGCCCCTTGTCAGAAAAAGATTTGCGGGAAGTGCA CTGCTTAAATGGTACCCCCAAACGCTGGGGCCTGTTTGGCGAGTCAAATCAGGGGCAGATAAACAATATCTCACTCGGTA TCGTTGATCTCATTTATCCGGCGCATTGGGGACCTTATTTTGTACATGATTTAGGCAAAAAAACCCATATTGATATCTAC CTTAATCGCCAGGTTGTACGTCAGGGGGCTTTTTTATCCCTCCATGATGAAATGAAAATGTTCCCGTTACAGCGCTGGGG GAAAAACCTAACCTTGATCGTCGGCTCACTGTTGGTTCTGGTGTTATTACTGATTTACGTACCGCTCGGTCTCCCCCTAA AGTTGAGCGTTGCCTGGTTGCAAGGGGCTCAAAGCCAACAGGTGACCAGCGTCGCAGCACTGGACAAAATGCCACTACGC ATCGGCGATATGCTGAAGGCTCAGGGTAATGGCATGTGCTATGTCCCCCCCAACATTCAAAACACACGCGGTTTCGTTTT CACCCCCTTTGATTGCTCCGGTATTTATTGGAATACCGCCTCCCCCTTGCCACAACCTGAATCTGAAACCATAGAAAAAG CTGCGGCACTGGTAGAAACAATCAATAAACAACTGCACCCGCAGGGCTCTGATGCCAGCGTCAACCCGAAACTGGCTACC GCCATTGAGAAATCGGGCATGATTTTATTGGACGATTTTTCTGACATTGTGCTGAAAACACAGGCGTTATGTAGCGAAAA TACCGATTGTATTCGCCTGAAGAATGCACTGGTTAATCTGGGGAATGCCAAAAACTGGTCAGCCTTGGTCAAACGGGCGC AATCCGGGAATTTGGAAGGGATGAATGTTCTGCTACGCCCGATCAGTGCCGATGTACTGGAAAATTTGATTAATACCGCT GCGTCATCATTCGTTTATCGTGAAACGCATTTAGCAACAGAAGCGTTGAATAGCCCACCTCCGGGCGGTTTTTTGATCAC CAGCGATGAGGGCAAGCAGTTAGTGAACCACCCTGCGCCAACGCTGCCCCTGTTTGACTACAGCGCACTGGAACAGTGGC GGGAATTGCAACGGCTCTCGGCGTTGCTACTTGATACCCCATTTAAAGCGGAAGGGATTATTACCAATATCACGACTGAT GCGAATGGCACACGGCATATTGCGCTGCATAGTGAGCCGGACATTGTCACTCTGGGTCGCTATCTGGCGACCAGCCTGCT ATTGCTGGTGCTGATTTTTTGCCTGGTCGTCAATATGGTCTTGTTGATTCAACGTGCCATGAAAAATCGTCGCCGGATGG ATAACATTCAACGTTATTATGACGATTGCTTTAATCAAACGCTCACACCGCCCCCCTTCTTGCGCTAG
Upstream 100 bases:
>100_bases AGGCACTAAATCGTTGAGTTATTAGGCCATATGCCTCCGCACTTTTTTATGTATTTTTCATAGCGTTGACGTAAATTTAA AGCGCTCTGATGGGGATGGG
Downstream 100 bases:
>100_bases CTCACCCATCTCCGGTTGATCATCGCTCATGCCAGCAGATGCACGGTGTAACATGGATATGCTAGGCTAGCTTTATCTAC TCGCTTATAGCAGAAAATAT
Product: intracellular growth attenuator IgaA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 715; Mature: 714
Protein sequence:
>715_residues MSTIVLILALLLTSLIAVGLLWWLRFRRPHPITAALPFVKPTHRKLTPEERVSIENYLRNQQNKHGFNTQPAFDSHALAA STSSTPMLVLTPQSDNVYSVTRAITRYGVASDEPNKWRYYLDSIEVHLPSAWEQYITQDNDVELIQTQTIPLVISLNGHT LNNHQSENTYQPILPSVSKNASIRKEDSEHIELLNIRKETPEEYALHGPNGLKEACAICIALLLLFFALSGPTVTLPWLV IVAVSLTCWACWNLFRPLSEKDLREVHCLNGTPKRWGLFGESNQGQINNISLGIVDLIYPAHWGPYFVHDLGKKTHIDIY LNRQVVRQGAFLSLHDEMKMFPLQRWGKNLTLIVGSLLVLVLLLIYVPLGLPLKLSVAWLQGAQSQQVTSVAALDKMPLR IGDMLKAQGNGMCYVPPNIQNTRGFVFTPFDCSGIYWNTASPLPQPESETIEKAAALVETINKQLHPQGSDASVNPKLAT AIEKSGMILLDDFSDIVLKTQALCSENTDCIRLKNALVNLGNAKNWSALVKRAQSGNLEGMNVLLRPISADVLENLINTA ASSFVYRETHLATEALNSPPPGGFLITSDEGKQLVNHPAPTLPLFDYSALEQWRELQRLSALLLDTPFKAEGIITNITTD ANGTRHIALHSEPDIVTLGRYLATSLLLLVLIFCLVVNMVLLIQRAMKNRRRMDNIQRYYDDCFNQTLTPPPFLR
Sequences:
>Translated_715_residues MSTIVLILALLLTSLIAVGLLWWLRFRRPHPITAALPFVKPTHRKLTPEERVSIENYLRNQQNKHGFNTQPAFDSHALAA STSSTPMLVLTPQSDNVYSVTRAITRYGVASDEPNKWRYYLDSIEVHLPSAWEQYITQDNDVELIQTQTIPLVISLNGHT LNNHQSENTYQPILPSVSKNASIRKEDSEHIELLNIRKETPEEYALHGPNGLKEACAICIALLLLFFALSGPTVTLPWLV IVAVSLTCWACWNLFRPLSEKDLREVHCLNGTPKRWGLFGESNQGQINNISLGIVDLIYPAHWGPYFVHDLGKKTHIDIY LNRQVVRQGAFLSLHDEMKMFPLQRWGKNLTLIVGSLLVLVLLLIYVPLGLPLKLSVAWLQGAQSQQVTSVAALDKMPLR IGDMLKAQGNGMCYVPPNIQNTRGFVFTPFDCSGIYWNTASPLPQPESETIEKAAALVETINKQLHPQGSDASVNPKLAT AIEKSGMILLDDFSDIVLKTQALCSENTDCIRLKNALVNLGNAKNWSALVKRAQSGNLEGMNVLLRPISADVLENLINTA ASSFVYRETHLATEALNSPPPGGFLITSDEGKQLVNHPAPTLPLFDYSALEQWRELQRLSALLLDTPFKAEGIITNITTD ANGTRHIALHSEPDIVTLGRYLATSLLLLVLIFCLVVNMVLLIQRAMKNRRRMDNIQRYYDDCFNQTLTPPPFLR >Mature_714_residues STIVLILALLLTSLIAVGLLWWLRFRRPHPITAALPFVKPTHRKLTPEERVSIENYLRNQQNKHGFNTQPAFDSHALAAS TSSTPMLVLTPQSDNVYSVTRAITRYGVASDEPNKWRYYLDSIEVHLPSAWEQYITQDNDVELIQTQTIPLVISLNGHTL NNHQSENTYQPILPSVSKNASIRKEDSEHIELLNIRKETPEEYALHGPNGLKEACAICIALLLLFFALSGPTVTLPWLVI VAVSLTCWACWNLFRPLSEKDLREVHCLNGTPKRWGLFGESNQGQINNISLGIVDLIYPAHWGPYFVHDLGKKTHIDIYL NRQVVRQGAFLSLHDEMKMFPLQRWGKNLTLIVGSLLVLVLLLIYVPLGLPLKLSVAWLQGAQSQQVTSVAALDKMPLRI GDMLKAQGNGMCYVPPNIQNTRGFVFTPFDCSGIYWNTASPLPQPESETIEKAAALVETINKQLHPQGSDASVNPKLATA IEKSGMILLDDFSDIVLKTQALCSENTDCIRLKNALVNLGNAKNWSALVKRAQSGNLEGMNVLLRPISADVLENLINTAA SSFVYRETHLATEALNSPPPGGFLITSDEGKQLVNHPAPTLPLFDYSALEQWRELQRLSALLLDTPFKAEGIITNITTDA NGTRHIALHSEPDIVTLGRYLATSLLLLVLIFCLVVNMVLLIQRAMKNRRRMDNIQRYYDDCFNQTLTPPPFLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the igaA family [H]
Homologues:
Organism=Escherichia coli, GI1789801, Length=719, Percent_Identity=53.4075104311544, Blast_Score=706, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010771 - ProDom: PD147088 [H]
Pfam domain/function: PF07095 IgaA [H]
EC number: NA
Molecular weight: Translated: 79941; Mature: 79810
Theoretical pI: Translated: 7.28; Mature: 7.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTIVLILALLLTSLIAVGLLWWLRFRRPHPITAALPFVKPTHRKLTPEERVSIENYLRN CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHC QQNKHGFNTQPAFDSHALAASTSSTPMLVLTPQSDNVYSVTRAITRYGVASDEPNKWRYY CCCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEE LDSIEVHLPSAWEQYITQDNDVELIQTQTIPLVISLNGHTLNNHQSENTYQPILPSVSKN EEEEEEECCHHHHHHCCCCCCEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC ASIRKEDSEHIELLNIRKETPEEYALHGPNGLKEACAICIALLLLFFALSGPTVTLPWLV CCCCCCCCCCEEEEECCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHH IVAVSLTCWACWNLFRPLSEKDLREVHCLNGTPKRWGLFGESNQGQINNISLGIVDLIYP HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHCCCCCCCCCCCEEEEEEEHHHHHHC AHWGPYFVHDLGKKTHIDIYLNRQVVRQGAFLSLHDEMKMFPLQRWGKNLTLIVGSLLVL CCCCCHHHHHCCCCEEEEEEECHHHHHCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHH VLLLIYVPLGLPLKLSVAWLQGAQSQQVTSVAALDKMPLRIGDMLKAQGNGMCYVPPNIQ HHHHHHHCCCCCCEEEHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCEEEECCCCC NTRGFVFTPFDCSGIYWNTASPLPQPESETIEKAAALVETINKQLHPQGSDASVNPKLAT CCCCCEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH AIEKSGMILLDDFSDIVLKTQALCSENTDCIRLKNALVNLGNAKNWSALVKRAQSGNLEG HHHHCCEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCC MNVLLRPISADVLENLINTAASSFVYRETHLATEALNSPPPGGFLITSDEGKQLVNHPAP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHCCCCC TLPLFDYSALEQWRELQRLSALLLDTPFKAEGIITNITTDANGTRHIALHSEPDIVTLGR CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCCCCEEHHHH YLATSLLLLVLIFCLVVNMVLLIQRAMKNRRRMDNIQRYYDDCFNQTLTPPPFLR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure STIVLILALLLTSLIAVGLLWWLRFRRPHPITAALPFVKPTHRKLTPEERVSIENYLRN HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHC QQNKHGFNTQPAFDSHALAASTSSTPMLVLTPQSDNVYSVTRAITRYGVASDEPNKWRYY CCCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEE LDSIEVHLPSAWEQYITQDNDVELIQTQTIPLVISLNGHTLNNHQSENTYQPILPSVSKN EEEEEEECCHHHHHHCCCCCCEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC ASIRKEDSEHIELLNIRKETPEEYALHGPNGLKEACAICIALLLLFFALSGPTVTLPWLV CCCCCCCCCCEEEEECCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHH IVAVSLTCWACWNLFRPLSEKDLREVHCLNGTPKRWGLFGESNQGQINNISLGIVDLIYP HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHCCCCCCCCCCCEEEEEEEHHHHHHC AHWGPYFVHDLGKKTHIDIYLNRQVVRQGAFLSLHDEMKMFPLQRWGKNLTLIVGSLLVL CCCCCHHHHHCCCCEEEEEEECHHHHHCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHH VLLLIYVPLGLPLKLSVAWLQGAQSQQVTSVAALDKMPLRIGDMLKAQGNGMCYVPPNIQ HHHHHHHCCCCCCEEEHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCEEEECCCCC NTRGFVFTPFDCSGIYWNTASPLPQPESETIEKAAALVETINKQLHPQGSDASVNPKLAT CCCCCEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH AIEKSGMILLDDFSDIVLKTQALCSENTDCIRLKNALVNLGNAKNWSALVKRAQSGNLEG HHHHCCEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCC MNVLLRPISADVLENLINTAASSFVYRETHLATEALNSPPPGGFLITSDEGKQLVNHPAP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHCCCCC TLPLFDYSALEQWRELQRLSALLLDTPFKAEGIITNITTDANGTRHIALHSEPDIVTLGR CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCCCCEEHHHH YLATSLLLLVLIFCLVVNMVLLIQRAMKNRRRMDNIQRYYDDCFNQTLTPPPFLR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11586360; 12142430 [H]