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The map label for this gene is cdaR [C]

Identifier: 170022374

GI number: 170022374

Start: 134940

End: 136067

Strand: Reverse

Name: cdaR [C]

Synonym: YPK_0113

Alternate gene names: 170022374

Gene position: 136067-134940 (Counterclockwise)

Preceding gene: 170022375

Following gene: 170022373

Centisome position: 2.9

GC content: 48.05

Gene sequence:

>1128_bases
ATGCCAACCAGCTATCTTAAGGAAGACACCGCTCGCCAAATCGTTCAGCGCGCCATGAGCATTATTGATTACTCGGTTAA
TGTCATGAATGAACACGGCGTCATTATTGCGTCTGGTGATCCTCGCCGTTTACATCAGCGTCATGAAGGTGCCGTTTTAG
CGCTGACGGAAAACCGGATGGTCATGATCGACGAAGCCGTGGCTGGCAGGCTTAAAGGCGTTAAACCAGGAATTAACCTG
CCGATTATTTTTCGTCAGCGGATGGTGGGCGTTATTGGGATTTCGGGTGAACCCGATAAAGTGCAGGCCTATGCTGAACT
GGTGCGCATGGCGGCCGAGCTGATTTTAGAACAAGCTGAAATGTTAGAGCAAAATCAGTGGGAAAAACGCTATCGCGAAC
AGTTAACCTCTCAGCTCATTGCCCAGCAAGGCAGTGCGGCTTCAGTGGCATCAATGGCGGCCTATTTAGGATTAGACCTC
ACACTGCCACGCATTGCGCTGATCGTCAGTCTGCGTGAACAAGAGCACGCTCATCAGCGGGATCTGGTCGAAATATTAAG
CAACCACAGCCGTGAAACATTGGTCACTTTACATGGGTTTGAGCGGGTTGTGGTGTTATTGCCGCTGAACCTTGCACACA
GTGACGATCGTGAAGTGACGGCCAGAAAGGCTTTGCGCAAATTGTATGCGCTGCTACAGCCGCGTTTTAGTCTGAATATG
TATGTTGGTGGCATTTTTGATGGCCTGGATGGGCTGCAACGCTCCTATCTTAGCGCACAAGCGATGCAAGAAACGGCATT
GCGACAAAAGCTCACGCAACCGGTCATGTTCTATCAAGACCATTTTTTGACCGTTCTTCTGAATGATTTTGCCGGGAGTT
GGCAGGCTGGTGAACTGAGCTCTGCCTGGCAAACACTGCGTCAGGCGGATAGCAAAGACGTTCTGTGTCACACTCTGCGT
TGTTACTTTGTACAGAATTGTGATCTGTCTCAAACGTCAAAACAACTGCATATCCATGTCAATACCCTACGCTATCGGTT
ACAGAAGATCGAAGCTATAACAGCTTTAAAAATCAATGAATTAAATTCAATTCTTCAGCTCTATATTGGCATGAAAATAG
AGAGCTAA

Upstream 100 bases:

>100_bases
CTTTTATCTTAATAGATAGAATGTCTGACCTTTACCTCAACGCCCATCGCAATTTTCAGCTACATTGATCCCCCTATCCA
CTCTCAGCCTGTGACAAGTC

Downstream 100 bases:

>100_bases
TTTGTAGTATCCTCCAAAAATCAGCCGTTTTAGCCGTCCATTTTCTGGCGGTTTCACTCAAGCTATTTTTCTCCCGCCCA
CCATAATGGCGACGTTGTTC

Product: transcriptional regulator CdaR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 374

Protein sequence:

>375_residues
MPTSYLKEDTARQIVQRAMSIIDYSVNVMNEHGVIIASGDPRRLHQRHEGAVLALTENRMVMIDEAVAGRLKGVKPGINL
PIIFRQRMVGVIGISGEPDKVQAYAELVRMAAELILEQAEMLEQNQWEKRYREQLTSQLIAQQGSAASVASMAAYLGLDL
TLPRIALIVSLREQEHAHQRDLVEILSNHSRETLVTLHGFERVVVLLPLNLAHSDDREVTARKALRKLYALLQPRFSLNM
YVGGIFDGLDGLQRSYLSAQAMQETALRQKLTQPVMFYQDHFLTVLLNDFAGSWQAGELSSAWQTLRQADSKDVLCHTLR
CYFVQNCDLSQTSKQLHIHVNTLRYRLQKIEAITALKINELNSILQLYIGMKIES

Sequences:

>Translated_375_residues
MPTSYLKEDTARQIVQRAMSIIDYSVNVMNEHGVIIASGDPRRLHQRHEGAVLALTENRMVMIDEAVAGRLKGVKPGINL
PIIFRQRMVGVIGISGEPDKVQAYAELVRMAAELILEQAEMLEQNQWEKRYREQLTSQLIAQQGSAASVASMAAYLGLDL
TLPRIALIVSLREQEHAHQRDLVEILSNHSRETLVTLHGFERVVVLLPLNLAHSDDREVTARKALRKLYALLQPRFSLNM
YVGGIFDGLDGLQRSYLSAQAMQETALRQKLTQPVMFYQDHFLTVLLNDFAGSWQAGELSSAWQTLRQADSKDVLCHTLR
CYFVQNCDLSQTSKQLHIHVNTLRYRLQKIEAITALKINELNSILQLYIGMKIES
>Mature_374_residues
PTSYLKEDTARQIVQRAMSIIDYSVNVMNEHGVIIASGDPRRLHQRHEGAVLALTENRMVMIDEAVAGRLKGVKPGINLP
IIFRQRMVGVIGISGEPDKVQAYAELVRMAAELILEQAEMLEQNQWEKRYREQLTSQLIAQQGSAASVASMAAYLGLDLT
LPRIALIVSLREQEHAHQRDLVEILSNHSRETLVTLHGFERVVVLLPLNLAHSDDREVTARKALRKLYALLQPRFSLNMY
VGGIFDGLDGLQRSYLSAQAMQETALRQKLTQPVMFYQDHFLTVLLNDFAGSWQAGELSSAWQTLRQADSKDVLCHTLRC
YFVQNCDLSQTSKQLHIHVNTLRYRLQKIEAITALKINELNSILQLYIGMKIES

Specific function: Seems To Regulate The Expression Of The Operons For The Enzymes Involved In D-Galactarate, D-Glucarate And D-Glycerate Utilization. [C]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=387, Percent_Identity=36.4341085271318, Blast_Score=218, Evalue=4e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008599 [H]

Pfam domain/function: PF05651 Diacid_rec [H]

EC number: NA

Molecular weight: Translated: 42472; Mature: 42341

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTSYLKEDTARQIVQRAMSIIDYSVNVMNEHGVIIASGDPRRLHQRHEGAVLALTENRM
CCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEECCCHHHHHHHCCCCEEEEECCCE
VMIDEAVAGRLKGVKPGINLPIIFRQRMVGVIGISGEPDKVQAYAELVRMAAELILEQAE
EEEEHHHHHHHCCCCCCCCCCHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
MLEQNQWEKRYREQLTSQLIAQQGSAASVASMAAYLGLDLTLPRIALIVSLREQEHAHQR
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
DLVEILSNHSRETLVTLHGFERVVVLLPLNLAHSDDREVTARKALRKLYALLQPRFSLNM
HHHHHHHCCCCCEEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
YVGGIFDGLDGLQRSYLSAQAMQETALRQKLTQPVMFYQDHFLTVLLNDFAGSWQAGELS
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHH
SAWQTLRQADSKDVLCHTLRCYFVQNCDLSQTSKQLHIHVNTLRYRLQKIEAITALKINE
HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH
LNSILQLYIGMKIES
HHHHHHHHHCCEECC
>Mature Secondary Structure 
PTSYLKEDTARQIVQRAMSIIDYSVNVMNEHGVIIASGDPRRLHQRHEGAVLALTENRM
CCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEECCCHHHHHHHCCCCEEEEECCCE
VMIDEAVAGRLKGVKPGINLPIIFRQRMVGVIGISGEPDKVQAYAELVRMAAELILEQAE
EEEEHHHHHHHCCCCCCCCCCHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
MLEQNQWEKRYREQLTSQLIAQQGSAASVASMAAYLGLDLTLPRIALIVSLREQEHAHQR
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
DLVEILSNHSRETLVTLHGFERVVVLLPLNLAHSDDREVTARKALRKLYALLQPRFSLNM
HHHHHHHCCCCCEEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
YVGGIFDGLDGLQRSYLSAQAMQETALRQKLTQPVMFYQDHFLTVLLNDFAGSWQAGELS
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHH
SAWQTLRQADSKDVLCHTLRCYFVQNCDLSQTSKQLHIHVNTLRYRLQKIEAITALKINE
HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH
LNSILQLYIGMKIES
HHHHHHHHHCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]