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The map label for this gene is fdhD [H]

Identifier: 170022298

GI number: 170022298

Start: 39189

End: 40013

Strand: Reverse

Name: fdhD [H]

Synonym: YPK_0036

Alternate gene names: 170022298

Gene position: 40013-39189 (Counterclockwise)

Preceding gene: 170022307

Following gene: 170022297

Centisome position: 0.85

GC content: 54.06

Gene sequence:

>825_bases
GTGAGCCAGATCAAACCTTCGAGATTATCCTCTAGCGCCGAAATCCGCGGTGCCCGGCAGCTTGACGTGCTACAGCGGCA
TAAATTGGCAGAACCACAGCAGGATTGGCTGGCGGAAGAAGTACCCGTTGCATTGGTATACAACGGCATCTCCCATGTGG
TGATGATGGCAACCCCTAAAGATTTGGCTGCCTTCGCGCTGGGCTTTTCGTTATCAGAAGGCATCATTAGCAGCCCACAG
GATATCTATGCTATTGAGATCACCCCCGGCTGCAACGGCATAGAGGTCAATATTGAGCTATCCAGCCGCCGTTTTGCTGG
CCTGAAAGAGCGCCGCCGCGCCATGGCAGGGCGTACCGGGTGCGGAGTTTGTGGCATTGAACAACTGGACGATATCTTCC
GCCCAATCACTCCGCTACCGTTCACCCAGGCATTTAACTTGGAGCATTTGGATACCGCCCTTGCCCAGCTAAAACAGGTA
CAACCGGTCGGTCAACTCACCGGCTGTACCCATGCTGCCGCGTGGATTAATCCTGAAGGTGAGTTATTAGGCGGTTGCGA
AGATGTAGGTCGCCATGTTGCACTGGATAAGCTACTGGGGATACGAGCAAAACAGCCGTGGCAACAAGGTGCGGTGCTGG
TTTCCAGCCGTGCCAGTTATGAAATGGTGCAAAAAACGGCCATGTGTGGTGCAGAGATTTTATTTGCCGTCTCCGCCGCC
ACCACGCTTGCCGTTGAAGTTGCCGAGCGCTGCAATTTGACGTTAGTCGGTTTCAGTAAACCGGGGCGGGCGACGGTGTA
TACCCATCCGCAGAGAATAAAATAA

Upstream 100 bases:

>100_bases
TGTGGAATGAATTTCTATGTTAGATAATACATAGCCGCACCATTCTTAATGTGAATGTTACCACATTGTGATTATGGGTT
ATAACTTTCAGGACCGCATA

Downstream 100 bases:

>100_bases
AAGAGATCGATTGATCGACAATCCACACCAAAAAATATCATTGATGACACCAAAGATATAACGATAGTGGCGAGATTGAT
GTCAAATTCTCAGTGACCGA

Product: formate dehydrogenase accessory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MSQIKPSRLSSSAEIRGARQLDVLQRHKLAEPQQDWLAEEVPVALVYNGISHVVMMATPKDLAAFALGFSLSEGIISSPQ
DIYAIEITPGCNGIEVNIELSSRRFAGLKERRRAMAGRTGCGVCGIEQLDDIFRPITPLPFTQAFNLEHLDTALAQLKQV
QPVGQLTGCTHAAAWINPEGELLGGCEDVGRHVALDKLLGIRAKQPWQQGAVLVSSRASYEMVQKTAMCGAEILFAVSAA
TTLAVEVAERCNLTLVGFSKPGRATVYTHPQRIK

Sequences:

>Translated_274_residues
MSQIKPSRLSSSAEIRGARQLDVLQRHKLAEPQQDWLAEEVPVALVYNGISHVVMMATPKDLAAFALGFSLSEGIISSPQ
DIYAIEITPGCNGIEVNIELSSRRFAGLKERRRAMAGRTGCGVCGIEQLDDIFRPITPLPFTQAFNLEHLDTALAQLKQV
QPVGQLTGCTHAAAWINPEGELLGGCEDVGRHVALDKLLGIRAKQPWQQGAVLVSSRASYEMVQKTAMCGAEILFAVSAA
TTLAVEVAERCNLTLVGFSKPGRATVYTHPQRIK
>Mature_273_residues
SQIKPSRLSSSAEIRGARQLDVLQRHKLAEPQQDWLAEEVPVALVYNGISHVVMMATPKDLAAFALGFSLSEGIISSPQD
IYAIEITPGCNGIEVNIELSSRRFAGLKERRRAMAGRTGCGVCGIEQLDDIFRPITPLPFTQAFNLEHLDTALAQLKQVQ
PVGQLTGCTHAAAWINPEGELLGGCEDVGRHVALDKLLGIRAKQPWQQGAVLVSSRASYEMVQKTAMCGAEILFAVSAAT
TLAVEVAERCNLTLVGFSKPGRATVYTHPQRIK

Specific function: Necessary for formate dehydrogenase activity [H]

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family [H]

Homologues:

Organism=Escherichia coli, GI1790329, Length=275, Percent_Identity=72.3636363636364, Blast_Score=415, Evalue=1e-117,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003786 [H]

Pfam domain/function: PF02634 FdhD-NarQ [H]

EC number: NA

Molecular weight: Translated: 29688; Mature: 29556

Theoretical pI: Translated: 7.43; Mature: 7.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQIKPSRLSSSAEIRGARQLDVLQRHKLAEPQQDWLAEEVPVALVYNGISHVVMMATPK
CCCCCCHHCCCCHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCHHEEECCCCCEEEEECCH
DLAAFALGFSLSEGIISSPQDIYAIEITPGCNGIEVNIELSSRRFAGLKERRRAMAGRTG
HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCHHCCHHHHHHHHCCCCC
CGVCGIEQLDDIFRPITPLPFTQAFNLEHLDTALAQLKQVQPVGQLTGCTHAAAWINPEG
CCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCHHHEEECCCC
ELLGGCEDVGRHVALDKLLGIRAKQPWQQGAVLVSSRASYEMVQKTAMCGAEILFAVSAA
CEECCHHHHHHHHHHHHHHCCCCCCCHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHH
TTLAVEVAERCNLTLVGFSKPGRATVYTHPQRIK
HHHHHHHHHHCCEEEEEECCCCCEEEECCCCCCC
>Mature Secondary Structure 
SQIKPSRLSSSAEIRGARQLDVLQRHKLAEPQQDWLAEEVPVALVYNGISHVVMMATPK
CCCCCHHCCCCHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCHHEEECCCCCEEEEECCH
DLAAFALGFSLSEGIISSPQDIYAIEITPGCNGIEVNIELSSRRFAGLKERRRAMAGRTG
HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCHHCCHHHHHHHHCCCCC
CGVCGIEQLDDIFRPITPLPFTQAFNLEHLDTALAQLKQVQPVGQLTGCTHAAAWINPEG
CCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCHHHEEECCCC
ELLGGCEDVGRHVALDKLLGIRAKQPWQQGAVLVSSRASYEMVQKTAMCGAEILFAVSAA
CEECCHHHHHHHHHHHHHHCCCCCCCHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHH
TTLAVEVAERCNLTLVGFSKPGRATVYTHPQRIK
HHHHHHHHHHCCEEEEEECCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA