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The map label for this gene is tdcB [H]

Identifier: 170022270

GI number: 170022270

Start: 8753

End: 9715

Strand: Reverse

Name: tdcB [H]

Synonym: YPK_0008

Alternate gene names: 170022270

Gene position: 9715-8753 (Counterclockwise)

Preceding gene: 170022272

Following gene: 170022269

Centisome position: 0.21

GC content: 52.86

Gene sequence:

>963_bases
ATGAATACGTTGTTTGATGCCATCAGAGAGGCCCACCAGATATTACGCCCACAAGTGAGAGTCACGCCGTTGGAGCATAG
CCCACTGCTATCTCAACACAGCGGTTGTGAGATCTATCTTAAATGTGAGCACCTGCAGCACACCGGTTCTTTTAAATTTC
GTGGGGCCAGTAACAAGTTACGTTTACTCAATGAGGCACAACGCCAGCAAGGTGTGATCACCGCCTCCACCGGTAACCAT
GGGCAAGGTGTGGCGCTGGCCGCAAAACTGGCGGGGATTAAATCCACTATTTACGCCCCAGAACAGGCGGCAGCCATCAA
GCTGGATGTGATCCGTGCACTGGGGGGGCAAATTGAATTAGTCTCCGGAGATGCCTTAAATGCTGAACTGGCCGCCGGTA
TCGCCGCTGAGCAACAAGGTAAAGTGTATATCTCACCGTATAACGACCCGCAGGTCATTGCCGGGCAAGGCACCTGTGGC
ATGGAGATGGTCGAACAGCAGCCCGATCTTGATGCGGTGTTTGTTGCCGTTGGTGGTGGTGGCCTGATTTCAGGTATTGC
GACCGTATTGAAAACATTATCGGATAAAACGCAGGTGATTGGTTGCTGGCCAGCCAATGCCACCAGCCTGTATACCTGTC
TGGAGAAAGGACAGATTCAGGAGGTGGCAGAGCAAGAAACGCTGTCTGACGGAACCTCCGGTGGTATCGAACCGGGAGCG
ATCACCTTTGCACTGTGCCAACAGCTAATCGATCAGAAGGTGCTGGTGAGTGAGCAAGAAATCAAAGAGGCCATGGGTTT
GATTGCCCGTACTGACCGCTGGATGATTGAAGGTGCCGCCGGTGTAGCACTGGCTGCGGCACTGAAATTGGCTCCGCAAT
GGCAAGGTAAGAAAGTGGCGGTGGTGTTGTGCGGTAAAAATATCGTGCTGGAGAAATATCTGGGAGCTGTCAGCGGATGC
TAA

Upstream 100 bases:

>100_bases
ACGTATATCCCCCAAATAATTCGAGTTGCAGGAAGCAGCTAGCGCGCAGACAACTTGCTGTACCACGGATATATTGAAAA
TAAAATTTAAAGGAATCGAA

Downstream 100 bases:

>100_bases
TTCTGAATAAACAAAAAATTCTCGACAAGTTCGATGCGGATCGCATCACATTATTGCTCAAAGAGGGCTTTATTGCTTTT
AGTCAGCAACGGGTCCAGAT

Product: hypothetical protein

Products: NA

Alternate protein names: Threonine deaminase [H]

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MNTLFDAIREAHQILRPQVRVTPLEHSPLLSQHSGCEIYLKCEHLQHTGSFKFRGASNKLRLLNEAQRQQGVITASTGNH
GQGVALAAKLAGIKSTIYAPEQAAAIKLDVIRALGGQIELVSGDALNAELAAGIAAEQQGKVYISPYNDPQVIAGQGTCG
MEMVEQQPDLDAVFVAVGGGGLISGIATVLKTLSDKTQVIGCWPANATSLYTCLEKGQIQEVAEQETLSDGTSGGIEPGA
ITFALCQQLIDQKVLVSEQEIKEAMGLIARTDRWMIEGAAGVALAAALKLAPQWQGKKVAVVLCGKNIVLEKYLGAVSGC

Sequences:

>Translated_320_residues
MNTLFDAIREAHQILRPQVRVTPLEHSPLLSQHSGCEIYLKCEHLQHTGSFKFRGASNKLRLLNEAQRQQGVITASTGNH
GQGVALAAKLAGIKSTIYAPEQAAAIKLDVIRALGGQIELVSGDALNAELAAGIAAEQQGKVYISPYNDPQVIAGQGTCG
MEMVEQQPDLDAVFVAVGGGGLISGIATVLKTLSDKTQVIGCWPANATSLYTCLEKGQIQEVAEQETLSDGTSGGIEPGA
ITFALCQQLIDQKVLVSEQEIKEAMGLIARTDRWMIEGAAGVALAAALKLAPQWQGKKVAVVLCGKNIVLEKYLGAVSGC
>Mature_320_residues
MNTLFDAIREAHQILRPQVRVTPLEHSPLLSQHSGCEIYLKCEHLQHTGSFKFRGASNKLRLLNEAQRQQGVITASTGNH
GQGVALAAKLAGIKSTIYAPEQAAAIKLDVIRALGGQIELVSGDALNAELAAGIAAEQQGKVYISPYNDPQVIAGQGTCG
MEMVEQQPDLDAVFVAVGGGGLISGIATVLKTLSDKTQVIGCWPANATSLYTCLEKGQIQEVAEQETLSDGTSGGIEPGA
ITFALCQQLIDQKVLVSEQEIKEAMGLIARTDRWMIEGAAGVALAAALKLAPQWQGKKVAVVLCGKNIVLEKYLGAVSGC

Specific function: Acts on both serine and threonine, and properly considered as a hydroxy amino acid deaminase [H]

COG id: COG1171

COG function: function code E; Threonine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the serine/threonine dehydratase family [H]

Homologues:

Organism=Homo sapiens, GI11345492, Length=315, Percent_Identity=36.1904761904762, Blast_Score=180, Evalue=2e-45,
Organism=Homo sapiens, GI295821202, Length=289, Percent_Identity=29.4117647058824, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI295821200, Length=289, Percent_Identity=29.4117647058824, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI4557415, Length=289, Percent_Identity=29.4117647058824, Blast_Score=80, Evalue=2e-15,
Organism=Escherichia coli, GI1789505, Length=311, Percent_Identity=36.3344051446945, Blast_Score=167, Evalue=7e-43,
Organism=Escherichia coli, GI1790207, Length=291, Percent_Identity=35.3951890034364, Blast_Score=141, Evalue=5e-35,
Organism=Caenorhabditis elegans, GI17508781, Length=314, Percent_Identity=32.8025477707006, Blast_Score=134, Evalue=6e-32,
Organism=Caenorhabditis elegans, GI71991565, Length=311, Percent_Identity=34.7266881028939, Blast_Score=133, Evalue=2e-31,
Organism=Caenorhabditis elegans, GI17537387, Length=308, Percent_Identity=34.7402597402597, Blast_Score=108, Evalue=4e-24,
Organism=Saccharomyces cerevisiae, GI6322631, Length=312, Percent_Identity=34.6153846153846, Blast_Score=168, Evalue=1e-42,
Organism=Saccharomyces cerevisiae, GI6320930, Length=292, Percent_Identity=36.986301369863, Blast_Score=143, Evalue=3e-35,
Organism=Saccharomyces cerevisiae, GI6319788, Length=284, Percent_Identity=26.056338028169, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6321594, Length=281, Percent_Identity=27.4021352313167, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21355833, Length=321, Percent_Identity=37.3831775700935, Blast_Score=135, Evalue=3e-32,
Organism=Drosophila melanogaster, GI24645328, Length=226, Percent_Identity=36.283185840708, Blast_Score=80, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001926
- InterPro:   IPR000634
- InterPro:   IPR005789 [H]

Pfam domain/function: PF00291 PALP [H]

EC number: =4.3.1.19 [H]

Molecular weight: Translated: 33782; Mature: 33782

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: PS00165 DEHYDRATASE_SER_THR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTLFDAIREAHQILRPQVRVTPLEHSPLLSQHSGCEIYLKCEHLQHTGSFKFRGASNKL
CCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCEEEECCCCHH
RLLNEAQRQQGVITASTGNHGQGVALAAKLAGIKSTIYAPEQAAAIKLDVIRALGGQIEL
HHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEE
VSGDALNAELAAGIAAEQQGKVYISPYNDPQVIAGQGTCGMEMVEQQPDLDAVFVAVGGG
EECCCCCHHHHHCCCCCCCCEEEECCCCCCEEEECCCCCCHHHHHCCCCCCEEEEEECCC
GLISGIATVLKTLSDKTQVIGCWPANATSLYTCLEKGQIQEVAEQETLSDGTSGGIEPGA
HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCH
ITFALCQQLIDQKVLVSEQEIKEAMGLIARTDRWMIEGAAGVALAAALKLAPQWQGKKVA
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCEEE
VVLCGKNIVLEKYLGAVSGC
EEEECCCHHHHHHHHHHCCC
>Mature Secondary Structure
MNTLFDAIREAHQILRPQVRVTPLEHSPLLSQHSGCEIYLKCEHLQHTGSFKFRGASNKL
CCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCEEEECCCCHH
RLLNEAQRQQGVITASTGNHGQGVALAAKLAGIKSTIYAPEQAAAIKLDVIRALGGQIEL
HHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEE
VSGDALNAELAAGIAAEQQGKVYISPYNDPQVIAGQGTCGMEMVEQQPDLDAVFVAVGGG
EECCCCCHHHHHCCCCCCCCEEEECCCCCCEEEECCCCCCHHHHHCCCCCCEEEEEECCC
GLISGIATVLKTLSDKTQVIGCWPANATSLYTCLEKGQIQEVAEQETLSDGTSGGIEPGA
HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCH
ITFALCQQLIDQKVLVSEQEIKEAMGLIARTDRWMIEGAAGVALAAALKLAPQWQGKKVA
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCEEE
VVLCGKNIVLEKYLGAVSGC
EEEECCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA