Click here to switch to the map view.

The map label for this gene is rpoC

Identifier: 169634593

GI number:

Start: 2991840

End: 2996033

Strand: Reverse

Name: rpoC

Synonym: ABSDF3242

Alternate gene names: NA

Gene position: NA

Preceding gene: 169634594

Following gene: 169634592

Centisome position: NA

GC content: NA

Gene sequence:

>4194_bases
TTGAAAGACTTGCTCGATATCATGCGTAAGAAAACGGACTCAGATGGTCATGCGCCAGTTGAGTTCGACCGTATCCGTAT
TGGTCTTGCGTCACCAGAAATGATTAAGTCATGGTCTCATGGTGAAGTTAAAAAACCTGAGACAATCAACTATCGTACGT
TCAAACCAGAACGTGATGGTTTGTTCTGTGCCAAAATCTTTGGTCCAGTAAAAGATTACGAATGCTTGTGTGGTAAATAC
AAGCGTATGAAATACAAAGGCGTCATTTGTGAAAAATGTGGCGTTGAAGTAACTACAGCAAAAGTTCGTCGTGAACGTAT
GGGTCACATTGAGCTTGCTTCTCCAGTTGCACATATCTGGTTCTTAAAATCGTTACCATCCCGTATCGGTTTATTACTTG
ATATGACACTTCGTGATATCGAACGTGTATTGTATTTCGAATCATACGTTGTTACTGATCCTGGTATGACACCATTTGAA
AAGTATCAACTTCTTAATGATGAAGAATACTTTACTGCTCTAGAAGAGCACGGCGACGAATTTGTTGCAAAAATGGGTGC
AGAAGCAGTTCAAGACTTGTTGAAAGACATCGACCTTGAAGCTGAAATTTCACGTTTACGTGAAGAAATTCCTCAAACAA
CTTCTGAAACGAAGTTGAAAAAAGCGTCTAAGCGCTTGAAATTGATGGAAGCATTCAAAGACTCAAACAACAAGCCAGAA
TGGATGGTAATGAACGTACTACCGGTACTTCCACCAGATTTACGTCCATTAGTTCCACTTGAAGGTGGTCGTTTCGCGAC
TTCTGACTTGAACGACTTATATCGTCGTGTAATTAACCGTAACAACCGTTTGAAGCGTCTTCTTGACCTTGCAGCGCCGG
ACATCATCGTACGTAACGAAAAACGTATGTTACAAGAGTCTGTAGATGCGTTGCTTGATAACGGTCGTCGTGGTCGTGCA
ATTACTGGTTCTAACAAACGCCCATTAAAATCTTTGGCAGATATGATCAAAGGTAAACAAGGTCGTTTCCGTCAGAACTT
GTTAGGTAAGCGTGTTGACTACTCTGGTCGTTCGGTAATTACTGTAGGTCCTACTTTACGTCTTCACCAATGTGGTCTTC
CGAAGAAAATGGCACTTGAATTATTCAAGCCATTCATTTTCGCGAAATTACAAGCTTCAGGTCAGGCAACAACCATTAAA
GCTGCGAAGAAAATGGTTGAACGTGAGACTCCGGAAGTTTGGGACGTTCTTGCATCTGTAATTCGTCAACATCCAGTAAT
GTTGAACCGTGCGCCAACACTTCACCGTTTAGGTCTTCAAGCATTTGAACCTATTCTTATTGAAGGTAAGGCAATCCGTC
TTCACCCGCTCGTCTGTGCTGCGTTCAACGCAGACTTCGACGGTGACCAAATGGCGGTACACGTTCCATTGACACTTGAA
GCACAGTTAGAAGCTCGTGCATTGATGATGTCAACAAACAACATCTTGTCACCAGCAAACGGTGAGCCAATCATCGTTCC
TTCTCAGGACGTTGTCTTGGGTCTTTACTACATCACTCGTGATGCAGTAAACGCGAAAGGTGAAGGCATGGTGTTTGCGG
ATACTCACGAAGTAAACCGTGCACTTGCAACTGGTCAAGTTGCGATCCATGCTCGTGTTAAAGTACGTGTGCATCAAACA
GTTATCAATGAAAATGGTGAGCGTGAACAGCAAACTATTATTGTTGATACAACACCAGGTCGTTGCTTACTTTGGGAAGT
TGTTCCAGAAGGTTTAAGCTTTGACATGATCAACCTTGAGATGACTAAAAAGAACATCTCTAAGTTAATCAACTCTTGCT
ACCGTAAACTTGGTTTGAAAGATACAGTTATCTTCGCTGACCAATTAATGTACTTGGGCTTCCGTCAAGCGACTCGTTCA
GGTGTATCTGTAGGTATGGAAGACATGTTAATTCCACCTACGAAACACACAATTATTGACAAAGCGGAAACAGAAGTTCG
TGAAATCGAACAACAGTTCGAACAAGGTTTCGTAACTGCTGGTGAACGTTATAACAAAGTTGTCGATATTTGGGCGCGTA
CAAACGACCAAGTTGCTAAAGCAATGATGGATAACTTGTCTTATACACTTGTGAAAAACAAACAAGGTGAAGACGAGAAG
CAAAAATCATTCAACAGTATCTATATGATGTCTGACTCTGGTGCCCGTGGTAGTGCGGCTCAGATTCGTCAGCTTGCAGG
TATGCGTGGTTTGATGGCAAAACCGGATGGCTCGATTATTGAGACTCCAATTAAAGCGAACTTCCGTGAAGGTTTGACAG
TACTCCAGTACTTCATTTCAACACACGGTGCGCGTAAAGGTTTGGCCGATACTGCATTGAAAACTGCGAACTCTGGTTAC
TTGACTCGTCGTCTTGTAGACGTAGCACAAGACTTAGTAATTACTGAGCCAGATTGTGGTACAAGAGGTGGTCTAGTGAT
GACTCCATTCATTCAAGGTGGTGATGTCATCGAGCCATTACGTGACCGTGTATTAGGTCGTGTAACTGCTGAAGATGTAC
GTCGTGCATCTGATGACGAAGTTGTATTACCTCGTGGTACGTTAATTGACGAGAAAATCGCAGCTCAGCTTGAAGAGGCT
GGTGTCGATGAAGTTAAAGTACGTTCTGTAATCGCATGTGAATCAACATTTGGTGTATGTGCGAAATGTTATGGTCGTGA
TCTTGCTCGTGGTCACTTGGTAAACCCAGGTGAGTCAGTAGGCGTAATGGCTGCACAGTCAATCGGTGAACCTGGTACAC
AGTTAACAATGCGTACGTTCCACGTGGGTGGTGCTGCAAGCCGAACTTCTGCTGCAAACAGTGTTCAAGTACGTAACAAA
GGTACTGTACGTTTCCATAACGTAAAAACTGTACAACATGCGAAAGGCCACTTGGTTTCAGTTTCACGTTCAGGTGAAAT
TGGTATTGCCGATGAGTTAGGTCGTGAGCGTGAACGCTACAAACTTCCTTACGGTGCAAGCATCTTGTTGAAAGATGGTG
AGCTTGTTGAGGCTGGTGGTATCGTTGCGACATGGGATCCGCATACGCATCCATTGGTAACAGAAGTTGCTGGTAAAGCA
CGTTTCAGCCAAATTGCTGATGGTGTAACTGCAACATCGAAAACTGATGATGCAACTGGTATGACAACTGTTGAAATCTT
GCCTGTAACAGCACGTCCTGCTTCTGGTAAAGATTTACGTCCAGCAATCGTATTAGATACAACTGATGGCGGTGAACAGT
TCTACTTCTTACCACAAAACACAATTGTGACTGTTCGCGACGGCGAAACAATTGGTGTGGGTGATGTTATCGGTCGTGTA
CCACAAGAATCTTCACGTACTCGTGATATTACCGGTGGTCTTCCGCGTGTTGCTGACTTGTTCGAAGCACGTAAGCCGAA
AGAACATGCGATCTTGGCAGAAGTGTCTGGTATCGTAAGCTTCGGTAAAGAGACCAAAGGTAAGAACCGTTTAGTGATTA
CTCCAGATGACGGTTCTGAAATTTACGAAGAGTTGATTCCAAAATGGCGTCAAATCAACGTGTTTGAAGGTGAACATGTG
AACCGTGGTGAAACCATTTCTGATGGTCCACAAAATCCACATGACATCTTACGCTTGAAAGGTGAAGTTGCTTTAACTAA
CTACATCGTGAACGAAGTTCAAGACGTTTACCGTCTCCAAGGTGTAAAAATCAACGATAAGCACATTGAAGTTATCGTAC
GTCAAATGTTGCGTAAAGTTGATATCATCGATGGTGGTGATACAAGCTTCATCAAAGGTGAACAAGTGGATTACATCCGT
GTTGTTCAAGAGAACCAAGCTGTCTTGGCGCAGAACAAGTTCCCTGCGAAGTTTGAACGTCAATTGATGGGTATTACGAA
AGCATCGCTTTCTACTGACTCATTCATCTCTGCTGCATCGTTCCAGGAAACAACTCGTGTGTTAACTGAAGCGGCTGTAA
CAGGTAAAGAAGATGATTTACGTGGCTTGAAAGAAAACGTTGTAGTGGGTCGCTTGATTCCAGCGGGTACTGGTCTTGCA
TACCACTTAGAGCGTCGTCGTCAAGAAGCGGAAGCAGCAGAACATGCTCTTCACAATGACTTCAGCGAAGTAGACCAAGC
ATTTAGCCAAGCTTTAAACTCAGAACAATTCTAA

Upstream 100 bases:

>100_bases
AAAATGGTGACTAAGTCGTAAGACTCACGATTTTTTAGGTAAAAACAATATTTGTGACCCAGTCGGGTAAGCGAGGCTTC
CCGACACACGGAGAAAAAAA

Downstream 100 bases:

>100_bases
GCTTAAACTTGTATTAAAAAGGCGCCTTAGGGCGCCTTTTTTGTGGAAAAAATAAGCCATTTTTACAAAAAGTCTATTAA
AGCACTCTTAATTTAACGTG

Product: DNA-directed RNA polymerase subunit beta'

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>1397_residues
MKDLLDIMRKKTDSDGHAPVEFDRIRIGLASPEMIKSWSHGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECLCGKY
KRMKYKGVICEKCGVEVTTAKVRRERMGHIELASPVAHIWFLKSLPSRIGLLLDMTLRDIERVLYFESYVVTDPGMTPFE
KYQLLNDEEYFTALEEHGDEFVAKMGAEAVQDLLKDIDLEAEISRLREEIPQTTSETKLKKASKRLKLMEAFKDSNNKPE
WMVMNVLPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQESVDALLDNGRRGRA
ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPTLRLHQCGLPKKMALELFKPFIFAKLQASGQATTIK
AAKKMVERETPEVWDVLASVIRQHPVMLNRAPTLHRLGLQAFEPILIEGKAIRLHPLVCAAFNADFDGDQMAVHVPLTLE
AQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYITRDAVNAKGEGMVFADTHEVNRALATGQVAIHARVKVRVHQT
VINENGEREQQTIIVDTTPGRCLLWEVVPEGLSFDMINLEMTKKNISKLINSCYRKLGLKDTVIFADQLMYLGFRQATRS
GVSVGMEDMLIPPTKHTIIDKAETEVREIEQQFEQGFVTAGERYNKVVDIWARTNDQVAKAMMDNLSYTLVKNKQGEDEK
QKSFNSIYMMSDSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIKANFREGLTVLQYFISTHGARKGLADTALKTANSGY
LTRRLVDVAQDLVITEPDCGTRGGLVMTPFIQGGDVIEPLRDRVLGRVTAEDVRRASDDEVVLPRGTLIDEKIAAQLEEA
GVDEVKVRSVIACESTFGVCAKCYGRDLARGHLVNPGESVGVMAAQSIGEPGTQLTMRTFHVGGAASRTSAANSVQVRNK
GTVRFHNVKTVQHAKGHLVSVSRSGEIGIADELGRERERYKLPYGASILLKDGELVEAGGIVATWDPHTHPLVTEVAGKA
RFSQIADGVTATSKTDDATGMTTVEILPVTARPASGKDLRPAIVLDTTDGGEQFYFLPQNTIVTVRDGETIGVGDVIGRV
PQESSRTRDITGGLPRVADLFEARKPKEHAILAEVSGIVSFGKETKGKNRLVITPDDGSEIYEELIPKWRQINVFEGEHV
NRGETISDGPQNPHDILRLKGEVALTNYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKVDIIDGGDTSFIKGEQVDYIR
VVQENQAVLAQNKFPAKFERQLMGITKASLSTDSFISAASFQETTRVLTEAAVTGKEDDLRGLKENVVVGRLIPAGTGLA
YHLERRRQEAEAAEHALHNDFSEVDQAFSQALNSEQF

Sequences:
NA

Specific function: NA

COG id: COG0086

COG function: function code K; DNA-directed RNA polymerase, beta' subunit/160 kD subunit

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA