Click here to switch to the map view.

The map label for this gene is lytR [H]

Identifier: 169630694

GI number: 169630694

Start: 3663619

End: 3665166

Strand: Direct

Name: lytR [H]

Synonym: MAB_3614

Alternate gene names: 169630694

Gene position: 3663619-3665166 (Clockwise)

Preceding gene: 169630689

Following gene: 169630695

Centisome position: 72.3

GC content: 66.09

Gene sequence:

>1548_bases
TTGCCGGGCGAAGGCCCGGCCGGAGAGGAATGGACCGACATCGTGACTGATCCGCACGCTCGACGCGCGAGCGGCTCGTC
GCAGGCGGAGCCGCCGCGCCCGCTGTGGCGGGGTATCGCGACGCTGGCAGCGGTCGCCGTCATGGTGATCACCGGTGCGG
CCTGGGGAAAGATCGGCAACATCGATCCGAACATCGCCCGGTTCGATCTTCCCGGCTTGTTCGGCAACGCCGGCAAGCCC
GATGACGGCGCGATCGACATTCTGATGGTCGGCGTCGACAGCCGTAGCGATGCACACGGCAACCCGCTCTCCCAGGAAGA
GCTGTCCATGCTGCGTGCCGGCGACGAAACGGCCACCAACACCGACACCATCATCCTCATCCGCATCCCGAACAACGGAA
AATCGGCGACGGCGATCTCCATCCCCCGTGACTCGTACGTCACCATCCCCGACGGCAGCAAGGGGAAGATCAACGGCGTC
TACGGCGAGGCCAAGGAGAACGACAGACAGAAGCGCGTCGAGTCCGGCGAAACGCTAGAGGCCGCCGAGCGCGAGTCCGT
GGACGCCGGCCGTTCGGCGCTGATCCAGACCGTCGGCAGGCTGACCGGCGTCACTGTCGATCGCTACGCCGAGGTCAGCA
TGCTCGGGTTCGTGCTGATGACGGATGCCCTGGGCGGAGTCAACGTGTGCCTCAACGAAGCGGTCTACGAACCGATGTCG
GGTGCGGATTTCCCTGCGGGCCCGCAAACCCTCGACGGCCCCAACGCACTGAGTTTCGTGCGTCAACGCCACGACCTGCC
ACGCGGCGACCTCGACCGCGTGGTCCGGCAACAGGTGGTGATGTCGTCGTTGGCGCACTCGGCGCTCTCTGGCGGCACCC
TGACCAACACCACTACGCTCGGCAAGCTGCGCGACGCGATCACCCGCACCGTGGTGCTGAGCCAGGGATGGGACGTCATG
GACTTCATCCAGCAGCTACAGAAGCTGTCAGGGGGCAACGTCGCATTCGCGACGATCCCGATCCTGCGTGAGGACGGCTG
GACCGAGGACGGCACCCAAAGCGTCGTGAAGGTGGACCCCGACCAGGTACGCAGCTGGGTGTCCGGCCTATTGGACCAGC
AGGCGCAGGGCAAGACCGAGGAAGCCACCTACTCCAAGGACCAGACGACCGCCGATGTCGTGAACGAGACCCAGATCAAC
GGGCTCGCTGCCGCGGTATCGGAACTGTTGGTGGGCAAGGGATTCACCGCAGGCAAGGTCGGCAACAACGAGAGCGATCA
CGTGGGCAGCAGCCAGGTGCAGGCCGCGCAACAGGACGACGTGGGCGCCAAGGCGGTAGCCGAGGCGCTGGGCCTCCCGG
TGGTGGAGAAGCAGGGCATCGCCGAACACACCGTCCGGGTGGTGCTGTCCAAGGATTACCAAGGGCCTGGGTCTGGCCGC
GAAACCACTCCTGCCGCTTCGGAAACCGGCTCTACGGAAGAAGACGCGCCGCCCCCTCCCCCGTCGCCGATTTTCACCGC
GGCCAATGGCCCGCGTTGCGTCAACTGA

Upstream 100 bases:

>100_bases
CCGCTCCGGTGATAACAAGCACACCTAGAGTCTGGCACGCCGAGTTCGCTTCCGAAGGATGGGCGGCACCCCGACGTAGC
CTGAGTCAGGCCTAGGACTG

Downstream 100 bases:

>100_bases
TGACGACGCTGACCGCGCTCCTGCTGGGCGACGTGAACAATCCCAGCCCACGGATCACCTACTACGACGACGCCACCGGC
GAACGCATCGAACTCTCGAC

Product: hypothetical protein

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 515; Mature: 514

Protein sequence:

>515_residues
MPGEGPAGEEWTDIVTDPHARRASGSSQAEPPRPLWRGIATLAAVAVMVITGAAWGKIGNIDPNIARFDLPGLFGNAGKP
DDGAIDILMVGVDSRSDAHGNPLSQEELSMLRAGDETATNTDTIILIRIPNNGKSATAISIPRDSYVTIPDGSKGKINGV
YGEAKENDRQKRVESGETLEAAERESVDAGRSALIQTVGRLTGVTVDRYAEVSMLGFVLMTDALGGVNVCLNEAVYEPMS
GADFPAGPQTLDGPNALSFVRQRHDLPRGDLDRVVRQQVVMSSLAHSALSGGTLTNTTTLGKLRDAITRTVVLSQGWDVM
DFIQQLQKLSGGNVAFATIPILREDGWTEDGTQSVVKVDPDQVRSWVSGLLDQQAQGKTEEATYSKDQTTADVVNETQIN
GLAAAVSELLVGKGFTAGKVGNNESDHVGSSQVQAAQQDDVGAKAVAEALGLPVVEKQGIAEHTVRVVLSKDYQGPGSGR
ETTPAASETGSTEEDAPPPPPSPIFTAANGPRCVN

Sequences:

>Translated_515_residues
MPGEGPAGEEWTDIVTDPHARRASGSSQAEPPRPLWRGIATLAAVAVMVITGAAWGKIGNIDPNIARFDLPGLFGNAGKP
DDGAIDILMVGVDSRSDAHGNPLSQEELSMLRAGDETATNTDTIILIRIPNNGKSATAISIPRDSYVTIPDGSKGKINGV
YGEAKENDRQKRVESGETLEAAERESVDAGRSALIQTVGRLTGVTVDRYAEVSMLGFVLMTDALGGVNVCLNEAVYEPMS
GADFPAGPQTLDGPNALSFVRQRHDLPRGDLDRVVRQQVVMSSLAHSALSGGTLTNTTTLGKLRDAITRTVVLSQGWDVM
DFIQQLQKLSGGNVAFATIPILREDGWTEDGTQSVVKVDPDQVRSWVSGLLDQQAQGKTEEATYSKDQTTADVVNETQIN
GLAAAVSELLVGKGFTAGKVGNNESDHVGSSQVQAAQQDDVGAKAVAEALGLPVVEKQGIAEHTVRVVLSKDYQGPGSGR
ETTPAASETGSTEEDAPPPPPSPIFTAANGPRCVN
>Mature_514_residues
PGEGPAGEEWTDIVTDPHARRASGSSQAEPPRPLWRGIATLAAVAVMVITGAAWGKIGNIDPNIARFDLPGLFGNAGKPD
DGAIDILMVGVDSRSDAHGNPLSQEELSMLRAGDETATNTDTIILIRIPNNGKSATAISIPRDSYVTIPDGSKGKINGVY
GEAKENDRQKRVESGETLEAAERESVDAGRSALIQTVGRLTGVTVDRYAEVSMLGFVLMTDALGGVNVCLNEAVYEPMSG
ADFPAGPQTLDGPNALSFVRQRHDLPRGDLDRVVRQQVVMSSLAHSALSGGTLTNTTTLGKLRDAITRTVVLSQGWDVMD
FIQQLQKLSGGNVAFATIPILREDGWTEDGTQSVVKVDPDQVRSWVSGLLDQQAQGKTEEATYSKDQTTADVVNETQING
LAAAVSELLVGKGFTAGKVGNNESDHVGSSQVQAAQQDDVGAKAVAEALGLPVVEKQGIAEHTVRVVLSKDYQGPGSGRE
TTPAASETGSTEEDAPPPPPSPIFTAANGPRCVN

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 54149; Mature: 54018

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGEGPAGEEWTDIVTDPHARRASGSSQAEPPRPLWRGIATLAAVAVMVITGAAWGKIGN
CCCCCCCCCCHHHHHCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
IDPNIARFDLPGLFGNAGKPDDGAIDILMVGVDSRSDAHGNPLSQEELSMLRAGDETATN
CCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCC
TDTIILIRIPNNGKSATAISIPRDSYVTIPDGSKGKINGVYGEAKENDRQKRVESGETLE
CCEEEEEEECCCCCCCEEEECCCCCEEECCCCCCCCEECCCCCCHHHHHHHHHHCCCHHH
AAERESVDAGRSALIQTVGRLTGVTVDRYAEVSMLGFVLMTDALGGVNVCLNEAVYEPMS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
GADFPAGPQTLDGPNALSFVRQRHDLPRGDLDRVVRQQVVMSSLAHSALSGGTLTNTTTL
CCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
GKLRDAITRTVVLSQGWDVMDFIQQLQKLSGGNVAFATIPILREDGWTEDGTQSVVKVDP
HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCEEEECH
DQVRSWVSGLLDQQAQGKTEEATYSKDQTTADVVNETQINGLAAAVSELLVGKGFTAGKV
HHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GNNESDHVGSSQVQAAQQDDVGAKAVAEALGLPVVEKQGIAEHTVRVVLSKDYQGPGSGR
CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCHHHCCCHHHHHEEEEECCCCCCCCCC
ETTPAASETGSTEEDAPPPPPSPIFTAANGPRCVN
CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
>Mature Secondary Structure 
PGEGPAGEEWTDIVTDPHARRASGSSQAEPPRPLWRGIATLAAVAVMVITGAAWGKIGN
CCCCCCCCCHHHHHCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
IDPNIARFDLPGLFGNAGKPDDGAIDILMVGVDSRSDAHGNPLSQEELSMLRAGDETATN
CCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCC
TDTIILIRIPNNGKSATAISIPRDSYVTIPDGSKGKINGVYGEAKENDRQKRVESGETLE
CCEEEEEEECCCCCCCEEEECCCCCEEECCCCCCCCEECCCCCCHHHHHHHHHHCCCHHH
AAERESVDAGRSALIQTVGRLTGVTVDRYAEVSMLGFVLMTDALGGVNVCLNEAVYEPMS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
GADFPAGPQTLDGPNALSFVRQRHDLPRGDLDRVVRQQVVMSSLAHSALSGGTLTNTTTL
CCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
GKLRDAITRTVVLSQGWDVMDFIQQLQKLSGGNVAFATIPILREDGWTEDGTQSVVKVDP
HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCEEEECH
DQVRSWVSGLLDQQAQGKTEEATYSKDQTTADVVNETQINGLAAAVSELLVGKGFTAGKV
HHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GNNESDHVGSSQVQAAQQDDVGAKAVAEALGLPVVEKQGIAEHTVRVVLSKDYQGPGSGR
CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCHHHCCCHHHHHEEEEECCCCCCCCCC
ETTPAASETGSTEEDAPPPPPSPIFTAANGPRCVN
CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12721630 [H]