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The map label for this gene is yjiR [C]

Identifier: 169630662

GI number: 169630662

Start: 3631283

End: 3632605

Strand: Direct

Name: yjiR [C]

Synonym: MAB_3582

Alternate gene names: 169630662

Gene position: 3631283-3632605 (Clockwise)

Preceding gene: 169630645

Following gene: 169630664

Centisome position: 71.66

GC content: 68.63

Gene sequence:

>1323_bases
GTGCGCATTCGACGTCATGCCGCGGTCGCCGACGGGATCGCCGAGCAGATCAGGACCGGTGCGCTCCCCGCCGGAACCCG
GCTGCCCACCCATCGTGCGCTGGCGGCGCGCCACGGCATCGCGGTCGCCACAGCGAGCCGCGTCTATCGCGATCTGACCG
CGTCCGGGCTCGTCGTCGGCGAGCCCGGACGCGGCACATTCGTGCGCGACCTCAGCGGCTTCGCCGGGCTGGAGCCCGCC
CGGCTTTCCGCCGGCCAGCGCACCGCCGATCTTTCCTTCAACCAGCCCCTATCGACCGGGCAGGACGACGAGCTGCGCCA
GGCATTGCGTGGTTTGGCAGCCGAGGGCGACCTGACCAGCCTGCTGTATCAGCAGCCTCCGGGCGGGCGCAGCCGCGACC
GCGCGGCGATCGCCAGCTACCTGCTGGGGCGCGGTATCGACGTCGCGCCGCACAGCGTCCTGATAACCGGCGGGGCCCAA
CAGGGTTTGGATGCTCTCCTGGTGGCACTCGCCGAGCCGCGTGCTGTCGTCGCCGTCGACGCACTCACCTATCCGGGCAT
CAGAATGCTGGCCACCGCACGGCACCTCGACCTGGCCGCGGTCCGCGCCGACACCACCGGTATGGACATCGACCATCTGG
AATGGCTGTGCGGTCAGCGACCGATCTCGATGCTGTATCTCATTCCCACACTGCATAATCCGCTGGGTTACATCCTCGGC
GCGAGCGCGCGTCAACGCATCGCCGCGCTGGCCGCACGCCATGACTTCCACATCATCGAGGACGCGACGTACGCGTTTCT
GGAGCCCGCGGCGCCCCCACCCGTGCAAACAGTTGCACCGGAACGCACGTTCTATATCGGGAGCATGTCCAAGAATCTGG
CCTCCGGGCTACGCATCGGATACGTCGTCGCTCCCCTTGCCCGACGTCCGGCGCTGATCCGCTCGTTGCGCGCAACGAGC
TGGGGCGCGTCCAGCATCGCCAGCGCCCTGACAACGCGCTGGCTGACCGACGGCACCGCGGCGAAGCTGGAGAAGCAACG
CCGCGAGGATGCCCGCCAACGCCAAGTCATCGCCCGGGCCGAGCTGGCCGGTCTCGATTACCACGCCCATCCCGCGTCGT
ATTCCGGCTGGCTCACCCTCCCCGAGCATGCACGCAGCGACGTCATCGCGCACGAGCTCGCAGAACACGGGATCATGGTG
ACCACGGCCGACGCGTTCGCGACAACGGCACACGCACCAAACGCACTGCGCCTAGCGCTGGCCACGCCCGAGCTATCCGA
GCTCACCGCCGCGCTGCGTCATATACGCACGGCGACAACATGA

Upstream 100 bases:

>100_bases
GGTAGCGCATATGGCACGGGAATTCGATCGTCACGCATCGACGGTAAACGCGTAAATTAGTGCAATCAATAAATTGTCCT
AATTACAATCGGGAGAACAC

Downstream 100 bases:

>100_bases
CTACCGCCCTACGAAAAATCCCCGCACCGGTTGCGGTCCCAGTGCGGGGATTCTCTGCGCGGTGACCGCGCGCCCTATTC
CCCGAGGCGTATCAGGCCGT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MRIRRHAAVADGIAEQIRTGALPAGTRLPTHRALAARHGIAVATASRVYRDLTASGLVVGEPGRGTFVRDLSGFAGLEPA
RLSAGQRTADLSFNQPLSTGQDDELRQALRGLAAEGDLTSLLYQQPPGGRSRDRAAIASYLLGRGIDVAPHSVLITGGAQ
QGLDALLVALAEPRAVVAVDALTYPGIRMLATARHLDLAAVRADTTGMDIDHLEWLCGQRPISMLYLIPTLHNPLGYILG
ASARQRIAALAARHDFHIIEDATYAFLEPAAPPPVQTVAPERTFYIGSMSKNLASGLRIGYVVAPLARRPALIRSLRATS
WGASSIASALTTRWLTDGTAAKLEKQRREDARQRQVIARAELAGLDYHAHPASYSGWLTLPEHARSDVIAHELAEHGIMV
TTADAFATTAHAPNALRLALATPELSELTAALRHIRTATT

Sequences:

>Translated_440_residues
MRIRRHAAVADGIAEQIRTGALPAGTRLPTHRALAARHGIAVATASRVYRDLTASGLVVGEPGRGTFVRDLSGFAGLEPA
RLSAGQRTADLSFNQPLSTGQDDELRQALRGLAAEGDLTSLLYQQPPGGRSRDRAAIASYLLGRGIDVAPHSVLITGGAQ
QGLDALLVALAEPRAVVAVDALTYPGIRMLATARHLDLAAVRADTTGMDIDHLEWLCGQRPISMLYLIPTLHNPLGYILG
ASARQRIAALAARHDFHIIEDATYAFLEPAAPPPVQTVAPERTFYIGSMSKNLASGLRIGYVVAPLARRPALIRSLRATS
WGASSIASALTTRWLTDGTAAKLEKQRREDARQRQVIARAELAGLDYHAHPASYSGWLTLPEHARSDVIAHELAEHGIMV
TTADAFATTAHAPNALRLALATPELSELTAALRHIRTATT
>Mature_440_residues
MRIRRHAAVADGIAEQIRTGALPAGTRLPTHRALAARHGIAVATASRVYRDLTASGLVVGEPGRGTFVRDLSGFAGLEPA
RLSAGQRTADLSFNQPLSTGQDDELRQALRGLAAEGDLTSLLYQQPPGGRSRDRAAIASYLLGRGIDVAPHSVLITGGAQ
QGLDALLVALAEPRAVVAVDALTYPGIRMLATARHLDLAAVRADTTGMDIDHLEWLCGQRPISMLYLIPTLHNPLGYILG
ASARQRIAALAARHDFHIIEDATYAFLEPAAPPPVQTVAPERTFYIGSMSKNLASGLRIGYVVAPLARRPALIRSLRATS
WGASSIASALTTRWLTDGTAAKLEKQRREDARQRQVIARAELAGLDYHAHPASYSGWLTLPEHARSDVIAHELAEHGIMV
TTADAFATTAHAPNALRLALATPELSELTAALRHIRTATT

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=305, Percent_Identity=24.2622950819672, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI33469970, Length=305, Percent_Identity=24.2622950819672, Blast_Score=77, Evalue=3e-14,
Organism=Escherichia coli, GI1790797, Length=467, Percent_Identity=25.6959314775161, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1787710, Length=447, Percent_Identity=25.2796420581655, Blast_Score=116, Evalue=2e-27,
Organism=Drosophila melanogaster, GI21356535, Length=350, Percent_Identity=24.2857142857143, Blast_Score=79, Evalue=7e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 46987; Mature: 46987

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIRRHAAVADGIAEQIRTGALPAGTRLPTHRALAARHGIAVATASRVYRDLTASGLVVG
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCEEEE
EPGRGTFVRDLSGFAGLEPARLSAGQRTADLSFNQPLSTGQDDELRQALRGLAAEGDLTS
CCCCCCHHHHHHCCCCCCHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHHH
LLYQQPPGGRSRDRAAIASYLLGRGIDVAPHSVLITGGAQQGLDALLVALAEPRAVVAVD
HHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEE
ALTYPGIRMLATARHLDLAAVRADTTGMDIDHLEWLCGQRPISMLYLIPTLHNPLGYILG
CCCCCCHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHCCCCCEEEEEEHHHCCCHHHHHC
ASARQRIAALAARHDFHIIEDATYAFLEPAAPPPVQTVAPERTFYIGSMSKNLASGLRIG
CHHHHHHHHHHHHCCCEEECCCCHHEECCCCCCCCCCCCCCCEEEEECHHHHHHHCCHHH
YVVAPLARRPALIRSLRATSWGASSIASALTTRWLTDGTAAKLEKQRREDARQRQVIARA
HHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
ELAGLDYHAHPASYSGWLTLPEHARSDVIAHELAEHGIMVTTADAFATTAHAPNALRLAL
HHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCEEEEECHHHHHHCCCCCCEEEEE
ATPELSELTAALRHIRTATT
ECCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRIRRHAAVADGIAEQIRTGALPAGTRLPTHRALAARHGIAVATASRVYRDLTASGLVVG
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCEEEE
EPGRGTFVRDLSGFAGLEPARLSAGQRTADLSFNQPLSTGQDDELRQALRGLAAEGDLTS
CCCCCCHHHHHHCCCCCCHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHHH
LLYQQPPGGRSRDRAAIASYLLGRGIDVAPHSVLITGGAQQGLDALLVALAEPRAVVAVD
HHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEE
ALTYPGIRMLATARHLDLAAVRADTTGMDIDHLEWLCGQRPISMLYLIPTLHNPLGYILG
CCCCCCHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHCCCCCEEEEEEHHHCCCHHHHHC
ASARQRIAALAARHDFHIIEDATYAFLEPAAPPPVQTVAPERTFYIGSMSKNLASGLRIG
CHHHHHHHHHHHHCCCEEECCCCHHEECCCCCCCCCCCCCCCEEEEECHHHHHHHCCHHH
YVVAPLARRPALIRSLRATSWGASSIASALTTRWLTDGTAAKLEKQRREDARQRQVIARA
HHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
ELAGLDYHAHPASYSGWLTLPEHARSDVIAHELAEHGIMVTTADAFATTAHAPNALRLAL
HHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCEEEEECHHHHHHCCCCCCEEEEE
ATPELSELTAALRHIRTATT
ECCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]