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The map label for this gene is ybaK [H]

Identifier: 169630625

GI number: 169630625

Start: 3588768

End: 3589274

Strand: Direct

Name: ybaK [H]

Synonym: MAB_3544

Alternate gene names: 169630625

Gene position: 3588768-3589274 (Clockwise)

Preceding gene: 169630620

Following gene: 169630627

Centisome position: 70.82

GC content: 68.05

Gene sequence:

>507_bases
GTGGGTTCCAAGGCCGTCAAAGCTGCTACTCCGGCCGTCGCCGCGCTGATCGCGGGAGGCGCCGAATACGAACTACTGCC
CTACGAGCACCGTGCCGGGGAACACGCGTTCGGCGAGGAAGCGGTGCGCGCGCTGGCGGGCTCCGGCCTGGTTCCCGAGC
AGATCTTCAAGACCTTGCTGATCTCGTTGGATCGCGGATCAGATCTAGCCGTCGCGGTCATTCCGGTGCCCGCCACACTC
TCGCTCAAGGCCGCCGCGGCTGCGCTGGGTCGTGCGAAGGCGACAATGGCCGACCCCGCGGCCGCAGAACGCAGCTCCGG
CTACGTGGTCGGTGGGATCTCTCCGCTCGGGCAACGCAAGCAGCTTCCCACCGTGATCGATGCCTCGGCACTGACCTGGG
AGCGCATTCTGTGCAGCGCGGGAAAGCGCGGCCTACAGATGGCGCTGGCCCCGGAAGATCTGGTCCGGCTCACCGGCGCG
GTGACGGCGCCCGTCATAGCAGGGTGA

Upstream 100 bases:

>100_bases
CGGACAGACTTCTCAACACCGACGCATGCCGGGGTATTTCCCAAAGTATCTCGACTGTCAACCGGAAATTCAGTGGACCC
GGGGCGTTACTGTGCCTCTC

Downstream 100 bases:

>100_bases
TCTGCTCCCCCACCGCCGCAGCTCCATCATCCGGAACGAGCAGCTCCGGCCCGTTGTTCGCAACGCTGTTGACCAGCGAC
GACACCCGGCGAGTTTCGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MGSKAVKAATPAVAALIAGGAEYELLPYEHRAGEHAFGEEAVRALAGSGLVPEQIFKTLLISLDRGSDLAVAVIPVPATL
SLKAAAAALGRAKATMADPAAAERSSGYVVGGISPLGQRKQLPTVIDASALTWERILCSAGKRGLQMALAPEDLVRLTGA
VTAPVIAG

Sequences:

>Translated_168_residues
MGSKAVKAATPAVAALIAGGAEYELLPYEHRAGEHAFGEEAVRALAGSGLVPEQIFKTLLISLDRGSDLAVAVIPVPATL
SLKAAAAALGRAKATMADPAAAERSSGYVVGGISPLGQRKQLPTVIDASALTWERILCSAGKRGLQMALAPEDLVRLTGA
VTAPVIAG
>Mature_167_residues
GSKAVKAATPAVAALIAGGAEYELLPYEHRAGEHAFGEEAVRALAGSGLVPEQIFKTLLISLDRGSDLAVAVIPVPATLS
LKAAAAALGRAKATMADPAAAERSSGYVVGGISPLGQRKQLPTVIDASALTWERILCSAGKRGLQMALAPEDLVRLTGAV
TAPVIAG

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro). May compensate for the lack of Cys-tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak activity against Cys-tRNA(Cys) and Gly- tRNA(Gly), as wel

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=157, Percent_Identity=48.4076433121019, Blast_Score=139, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17007; Mature: 16876

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSKAVKAATPAVAALIAGGAEYELLPYEHRAGEHAFGEEAVRALAGSGLVPEQIFKTLL
CCCCCCHHHHHHHHHHHCCCCCEEECCCHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
ISLDRGSDLAVAVIPVPATLSLKAAAAALGRAKATMADPAAAERSSGYVVGGISPLGQRK
HHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHCCCCEEEECCCCCCCCC
QLPTVIDASALTWERILCSAGKRGLQMALAPEDLVRLTGAVTAPVIAG
CCCCHHCHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
GSKAVKAATPAVAALIAGGAEYELLPYEHRAGEHAFGEEAVRALAGSGLVPEQIFKTLL
CCCCCHHHHHHHHHHHCCCCCEEECCCHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
ISLDRGSDLAVAVIPVPATLSLKAAAAALGRAKATMADPAAAERSSGYVVGGISPLGQRK
HHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHCCCCEEEECCCCCCCCC
QLPTVIDASALTWERILCSAGKRGLQMALAPEDLVRLTGAVTAPVIAG
CCCCHHCHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 3012467; 10493123 [H]