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The map label for this gene is rpoE [H]

Identifier: 169630624

GI number: 169630624

Start: 3587911

End: 3588618

Strand: Reverse

Name: rpoE [H]

Synonym: MAB_3543c

Alternate gene names: 169630624

Gene position: 3588618-3587911 (Counterclockwise)

Preceding gene: 169630626

Following gene: 169630623

Centisome position: 70.82

GC content: 60.73

Gene sequence:

>708_bases
ATGGCGTGCCTCGAACGTCCGATGTCGGTGCCGATCCGTATGGTCGGTGTCGCTACCGAAAGGACCGCCGTGACAAGCAT
GGACAGCGCTGCAGAACTCCCGGGTCTGGTTCACGTCGAAACCGAGGCCGAGCGGGTCGCGCGGTTCGAACGTGATGCGT
TACCGCTGCTGGACCAGCTCTACGGCGCTGCCTTGCGGATGACCAGAAATCCCGCGGACGCCGAGGACCTGGTGCAAGAG
ACGATGGTCAAGGCATATGCCGGGTTCGGGACCTTCAAAGAGGGCACCAACCTCAAGGCGTGGCTGTACCGGATTCTGAC
CAATACGTACATCAATATTTATCGCAAGAAGCAGCGTCAGCCAGCGGAGTATCCGACCGAGGAAATCACTGACTGGCAGC
TGGCGGCGAACGCCGAGCACACCTCCACGGGGCTGCGGTCGGCCGAGATCGAAGCCCTTGACGGGTTACCTGACGACGAA
ATCAAGGAAGCGTTGAATAAGCTGCCGGAAGAATTCCGGATGGCCGTGTACTACGCGGACGTCGAAGGCTTCCCCTATAA
GGAGATCGCCGAGATCATGGACACCCCGATCGGCACTGTTATGTCGCGGTTGCACCGCGGCCGTCGTCAGCTGCGCGACT
TGCTGTCTGAAGTGGCCAAGGACCGCGGATTCCTGCGCAACAATGAGTTGGCGGAGGGCCGGGCATGA

Upstream 100 bases:

>100_bases
AGATACTTTGGGAAATACCCCGGCATGCGTCGGTGTTGAGAAGTCTGTCCGCGGTGTGCGGACTGTGGTCCTCAACACGG
AAGGGGTATAGCAGGTGACA

Downstream 100 bases:

>100_bases
CCGACGGTGAACTCAAGAAGAGTGTCGACAAGAGTGGCAACTGCGAGGTATCGGGTTGCGCTGAGGTGATCGCGGAAGTG
TGGACCCTCCTCGACGGTGA

Product: RNA polymerase sigma-E factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MACLERPMSVPIRMVGVATERTAVTSMDSAAELPGLVHVETEAERVARFERDALPLLDQLYGAALRMTRNPADAEDLVQE
TMVKAYAGFGTFKEGTNLKAWLYRILTNTYINIYRKKQRQPAEYPTEEITDWQLAANAEHTSTGLRSAEIEALDGLPDDE
IKEALNKLPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRDLLSEVAKDRGFLRNNELAEGRA

Sequences:

>Translated_235_residues
MACLERPMSVPIRMVGVATERTAVTSMDSAAELPGLVHVETEAERVARFERDALPLLDQLYGAALRMTRNPADAEDLVQE
TMVKAYAGFGTFKEGTNLKAWLYRILTNTYINIYRKKQRQPAEYPTEEITDWQLAANAEHTSTGLRSAEIEALDGLPDDE
IKEALNKLPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRDLLSEVAKDRGFLRNNELAEGRA
>Mature_234_residues
ACLERPMSVPIRMVGVATERTAVTSMDSAAELPGLVHVETEAERVARFERDALPLLDQLYGAALRMTRNPADAEDLVQET
MVKAYAGFGTFKEGTNLKAWLYRILTNTYINIYRKKQRQPAEYPTEEITDWQLAANAEHTSTGLRSAEIEALDGLPDDEI
KEALNKLPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRDLLSEVAKDRGFLRNNELAEGRA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=175, Percent_Identity=34.2857142857143, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 26570; Mature: 26438

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MACLERPMSVPIRMVGVATERTAVTSMDSAAELPGLVHVETEAERVARFERDALPLLDQL
CCCCCCCCCCCEEEEEECHHHHHHHCCHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHH
YGAALRMTRNPADAEDLVQETMVKAYAGFGTFKEGTNLKAWLYRILTNTYINIYRKKQRQ
HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
PAEYPTEEITDWQLAANAEHTSTGLRSAEIEALDGLPDDEIKEALNKLPEEFRMAVYYAD
CCCCCHHHCCCHHHHCCCCHHHHCCCHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHEEEC
VEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRDLLSEVAKDRGFLRNNELAEGRA
CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
ACLERPMSVPIRMVGVATERTAVTSMDSAAELPGLVHVETEAERVARFERDALPLLDQL
CCCCCCCCCCEEEEEECHHHHHHHCCHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHH
YGAALRMTRNPADAEDLVQETMVKAYAGFGTFKEGTNLKAWLYRILTNTYINIYRKKQRQ
HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
PAEYPTEEITDWQLAANAEHTSTGLRSAEIEALDGLPDDEIKEALNKLPEEFRMAVYYAD
CCCCCHHHCCCHHHHCCCCHHHHCCCHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHEEEC
VEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRDLLSEVAKDRGFLRNNELAEGRA
CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]