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The map label for this gene is ycdC [C]

Identifier: 169630608

GI number: 169630608

Start: 3574746

End: 3575432

Strand: Direct

Name: ycdC [C]

Synonym: MAB_3527

Alternate gene names: 169630608

Gene position: 3574746-3575432 (Clockwise)

Preceding gene: 169630599

Following gene: 169630610

Centisome position: 70.55

GC content: 65.21

Gene sequence:

>687_bases
ATGCGTGACCTTGCGAAACTGGCCGGGCGTCGAGGCACGGTGAACTCGACGGTGGCGACGCAGGATTCGACTCAGGGAAA
CACACGGCGCGGTGGGCGGCTGCCCCGAGATGAACGGCGCGGCCAATTGGTCGGTTCCGCCAGCGAGATATTCGTCGATC
GCGGCTACCACGCCGCCGGTATGGACGAGATCGCCGACCGGGCAGGCGTAAGCAAGCCCGTTCTCTACCAACACTTTCCG
AGCAAGCTTGAGCTATATCTGGCGGTGCTGCACAAGCACGCCGACAATCTGGTCTCCAGCGTGCGCCAGGCGCTGCGCAC
CACCACCGACAACCGTCAGCGGCTGCGCGCGGCCGTCATGGCGTTCTTCGATTTCGTCGAGCATGACAGCCAGGGCTACC
GGCTGATCTTCGAGAACGATCTCGTCGGCGTGCCCCAGGTCAGCGAACGCGTCGAGGGCGCCATCAGCGCGTGCACCGAT
GCGGTATTCGACCTGGTCAGCCACGATTCCGGGCTGGATCCCCACCATGCCCGCATGGTGGCCGTCGGCCTCGTAGGGAT
CAGCCAGGTCAGTGCGCGCTACTGGCTGGACAACGAGAAGCCCATCTCCAAGGACGACGCCGTCAACGCAACCGTCGGCT
TCGCCTGGGGCGGGCTCTCGCACGTTCCGCTGCAGCCACACGGTTAG

Upstream 100 bases:

>100_bases
GAGTACTGTCTGTAGTTCGGGTCCAAGCGGATTTGAATAGCCGCTTGAGTGAGATGGCGTGGGCGACCTTTTCAGCCGCT
TGCGCGCAGAGGATAAGGAC

Downstream 100 bases:

>100_bases
CTTCCGCCGGCCGTTAGGGCCTTAGCTTGAGAAGCCGACGCGACGCGCGTCGGCAACACCGATCTCCACGTAGGCGATCC
GGGCTGCGGCGATCAGGTAC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; TetR-Family Transcriptional Regulator; Transcriptional Regulator; Regulatory Protein TetR; TetR-Type Transcriptional Regulator; TetR/AcrR Family Transcriptional Regulator; Transcriptional Regulator TetR-Family; Transcriptional Regulator TetR Family Protein; TetR-Family Protein Regulatory Protein; Transcription Regulator; Transcriptional Regulatory Protein; Transcriptional Regulator Tetr Family; TetR-Family Regulatory Protein; TetR-Family Transcriptional Regulator Protein; Tetr Family Transcriptional Regulator

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MRDLAKLAGRRGTVNSTVATQDSTQGNTRRGGRLPRDERRGQLVGSASEIFVDRGYHAAGMDEIADRAGVSKPVLYQHFP
SKLELYLAVLHKHADNLVSSVRQALRTTTDNRQRLRAAVMAFFDFVEHDSQGYRLIFENDLVGVPQVSERVEGAISACTD
AVFDLVSHDSGLDPHHARMVAVGLVGISQVSARYWLDNEKPISKDDAVNATVGFAWGGLSHVPLQPHG

Sequences:

>Translated_228_residues
MRDLAKLAGRRGTVNSTVATQDSTQGNTRRGGRLPRDERRGQLVGSASEIFVDRGYHAAGMDEIADRAGVSKPVLYQHFP
SKLELYLAVLHKHADNLVSSVRQALRTTTDNRQRLRAAVMAFFDFVEHDSQGYRLIFENDLVGVPQVSERVEGAISACTD
AVFDLVSHDSGLDPHHARMVAVGLVGISQVSARYWLDNEKPISKDDAVNATVGFAWGGLSHVPLQPHG
>Mature_228_residues
MRDLAKLAGRRGTVNSTVATQDSTQGNTRRGGRLPRDERRGQLVGSASEIFVDRGYHAAGMDEIADRAGVSKPVLYQHFP
SKLELYLAVLHKHADNLVSSVRQALRTTTDNRQRLRAAVMAFFDFVEHDSQGYRLIFENDLVGVPQVSERVEGAISACTD
AVFDLVSHDSGLDPHHARMVAVGLVGISQVSARYWLDNEKPISKDDAVNATVGFAWGGLSHVPLQPHG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24955; Mature: 24955

Theoretical pI: Translated: 7.39; Mature: 7.39

Prosite motif: PS50977 HTH_TETR_2 ; PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDLAKLAGRRGTVNSTVATQDSTQGNTRRGGRLPRDERRGQLVGSASEIFVDRGYHAAG
CCCHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHCCCCCCCC
MDEIADRAGVSKPVLYQHFPSKLELYLAVLHKHADNLVSSVRQALRTTTDNRQRLRAAVM
HHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
AFFDFVEHDSQGYRLIFENDLVGVPQVSERVEGAISACTDAVFDLVSHDSGLDPHHARMV
HHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
AVGLVGISQVSARYWLDNEKPISKDDAVNATVGFAWGGLSHVPLQPHG
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MRDLAKLAGRRGTVNSTVATQDSTQGNTRRGGRLPRDERRGQLVGSASEIFVDRGYHAAG
CCCHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHCCCCCCCC
MDEIADRAGVSKPVLYQHFPSKLELYLAVLHKHADNLVSSVRQALRTTTDNRQRLRAAVM
HHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
AFFDFVEHDSQGYRLIFENDLVGVPQVSERVEGAISACTDAVFDLVSHDSGLDPHHARMV
HHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
AVGLVGISQVSARYWLDNEKPISKDDAVNATVGFAWGGLSHVPLQPHG
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA