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The map label for this gene is smpB

Identifier: 169630554

GI number: 169630554

Start: 3514551

End: 3515030

Strand: Reverse

Name: smpB

Synonym: MAB_3473c

Alternate gene names: 169630554

Gene position: 3515030-3514551 (Counterclockwise)

Preceding gene: 169630555

Following gene: 169630551

Centisome position: 69.37

GC content: 61.46

Gene sequence:

>480_bases
ATGAGTAAGAAACCGGCCGACGGACGAAAAGTCATCGCGACCAATCGCAAGGCACGACACAACTATTCGATCATCGATGT
GTATGAGGCCGGGGTGCAGTTGGTGGGCACCGAGGTCAAGACACTGCGCGAGGGCAAGGCATCGCTGGTCGATGCCTTCG
CCACCGTCGATGACGGCGAGGTGTGGTTGCGCGGCGTGCATATCCCGCAATACGACCACGGCACCTGGACCAATCACGCT
CCGCTGCGGAACCGGAAACTGTTGTTGCACAGGGCGCAGATCGACATGCTGGTCGGCAAGACCCGCGACGGCAATCTGAC
CCTGGTACCGCTGTCGCTGTACTTCCTGGACGGCAAGGTCAAGGTGGAGTTGGCGCTGGCGCGGGGTAAGCAGGCTCACG
ACAAGCGTCAGGACATCGCCAAACGGGACGCTTCGCGTGAGATCACCCGTGAGCTGGGACGCCGCGCCAAAGGCATGTGA

Upstream 100 bases:

>100_bases
CCTACGGCGATGTGTTCCTCGCGGCCATACAGATGGCGGCGCTGGGCATCCTGCTGGCCGGTGTGACCGCCTACGTGACT
TTGCGTCTGTATGTGCGGCG

Downstream 100 bases:

>100_bases
CCCGGTTTACGCGGGCACTCGTCGAAAGCAACCTTTAGCGGTTTCGTCTCGCACGTTTCCGTCACAACGTCGGTTTCGGC
GCTAGCTAGAAGGCGCGACT

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MSKKPADGRKVIATNRKARHNYSIIDVYEAGVQLVGTEVKTLREGKASLVDAFATVDDGEVWLRGVHIPQYDHGTWTNHA
PLRNRKLLLHRAQIDMLVGKTRDGNLTLVPLSLYFLDGKVKVELALARGKQAHDKRQDIAKRDASREITRELGRRAKGM

Sequences:

>Translated_159_residues
MSKKPADGRKVIATNRKARHNYSIIDVYEAGVQLVGTEVKTLREGKASLVDAFATVDDGEVWLRGVHIPQYDHGTWTNHA
PLRNRKLLLHRAQIDMLVGKTRDGNLTLVPLSLYFLDGKVKVELALARGKQAHDKRQDIAKRDASREITRELGRRAKGM
>Mature_158_residues
SKKPADGRKVIATNRKARHNYSIIDVYEAGVQLVGTEVKTLREGKASLVDAFATVDDGEVWLRGVHIPQYDHGTWTNHAP
LRNRKLLLHRAQIDMLVGKTRDGNLTLVPLSLYFLDGKVKVELALARGKQAHDKRQDIAKRDASREITRELGRRAKGM

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=146, Percent_Identity=43.1506849315069, Blast_Score=112, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_MYCA9 (B1MEU3)

Other databases:

- EMBL:   CU458896
- RefSeq:   YP_001704203.1
- ProteinModelPortal:   B1MEU3
- SMR:   B1MEU3
- EnsemblBacteria:   EBMYCT00000007036
- GeneID:   5965973
- GenomeReviews:   CU458896_GR
- KEGG:   mab:MAB_3473c
- GeneTree:   EBGT00050000017126
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- BioCyc:   MABS561007:MAB_3473C-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 17890; Mature: 17759

Theoretical pI: Translated: 10.74; Mature: 10.74

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKPADGRKVIATNRKARHNYSIIDVYEAGVQLVGTEVKTLREGKASLVDAFATVDDGE
CCCCCCCCCEEEEECCCCCCCCCEEEEECCCCCEECHHHHHHHCCHHHHHHHHHCCCCCC
VWLRGVHIPQYDHGTWTNHAPLRNRKLLLHRAQIDMLVGKTRDGNLTLVPLSLYFLDGKV
EEEEEECCCCCCCCCCCCCCCCCCCEEEEEHHHHHEEEECCCCCCEEEEEEEEEEECCEE
KVELALARGKQAHDKRQDIAKRDASREITRELGRRAKGM
EEEEEECCCCCCHHHHHHHHHHCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKKPADGRKVIATNRKARHNYSIIDVYEAGVQLVGTEVKTLREGKASLVDAFATVDDGE
CCCCCCCCEEEEECCCCCCCCCEEEEECCCCCEECHHHHHHHCCHHHHHHHHHCCCCCC
VWLRGVHIPQYDHGTWTNHAPLRNRKLLLHRAQIDMLVGKTRDGNLTLVPLSLYFLDGKV
EEEEEECCCCCCCCCCCCCCCCCCCEEEEEHHHHHEEEECCCCCCEEEEEEEEEEECCEE
KVELALARGKQAHDKRQDIAKRDASREITRELGRRAKGM
EEEEEECCCCCCHHHHHHHHHHCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA