| Definition | Mycobacterium abscessus ATCC 19977 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010397 |
| Length | 5,067,172 |
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The map label for this gene is yhjE [H]
Identifier: 169630497
GI number: 169630497
Start: 3462823
End: 3464133
Strand: Direct
Name: yhjE [H]
Synonym: MAB_3416
Alternate gene names: 169630497
Gene position: 3462823-3464133 (Clockwise)
Preceding gene: 169630493
Following gene: 169630499
Centisome position: 68.34
GC content: 64.45
Gene sequence:
>1311_bases ATGACCTCATCCCCGGCAGAGCCGCGGCAGATGGCCGATGGACAAGTCAGCCCGCGCCGCGTATTCATGGCCAGCGCGGT CGGGTCTGCCATCGAGTTCTACGACTTCTATATCTATGGCACCGCGGCCGCACTCGTATTCCCGGCCGTCTTCTTCCCGA ATCTCAGCCATTCCCTGGCGCTCTTCGCCTCTATCGCCACCTTCAGCACGGCATTCTTGGCCCGGCCCATCGGTGCCGCC CTGTTCGGCCACTATGGAGACCGCTTCAGCCGCAAAGGCACCTTGGTGGTCACGCTGATCACCATGGGGCTCGCGACCAT GGCGGTCGGCCTGGTTCCCGGCGCCGCCACCATCGGGGCAGCCGCGCCGACCGCCATCGTCATACTGCGACTGGTGCAAG GCCTTGCGGTCGGAGGCGAGTGGAGCGGCGCGGCGTTACTTTCCGCCGAATACTCGCCGAGCCAGAACCGCGGCCGCGCC GCCACCGCCGTGCCGATCGGAACCTCGACGGGGCTATTGCTCAGCAGCCTGGTCTTCCTCATCGTCAGCCTGACGATCGG AGAAGACAGTCCCGCGTTCCTGTCGTGGGGATGGCGCGTGCCCTTTATTGCCAGCGGCCTGCTGGTGGCGGTGGGTCTGT ACATCCGGCTCCAGATCGCCGAGACGCCCCAGTTCGTGGAGGCGAAGGCTCACCACCAGCTGGTCAAATCGCCACTGCGA CATGTCATCACAGAGAGCCCCCGCACCCTGGTGCTGACCAGCGGCACCATGCTGATCATCTTCACGCTGTCCTTCATGAC CAATACATACTTTCCGGGATTCGCCAGATCGGAATTGCACTTCTCCCGGGCCGCCATCCTGGCTGCCGGAGCCTTGGGGG CTGTCGTTCTCATGGTGTCGGCGACTGCCGGAGGAATTCTCAGCGACCGGCTGGGCCGCCGCACAGTCATATTGAGCAGC ATGACCTTGACGCTCCCTTGGACGCTACTGGTCACTCCCCTGCTGACCAGCGGCCCATTCTGGGCCTACCTGGCAGCCAT GGCACTCACCTATGTGTTGTTCGGGCTCGCATTCGGCCCGATGGCGAGCTTCCTTCCGGAGTCCTATCCGGTAGGTACCC GCTACAGCGGCACCGGGGTGGCGTTCAACGTGGCCGGCGTGTTCGGGGGCGCCATACCGCCGTTGATCGCCGGACCGTTG CAGAACACACTGGGCAGCTGGGCGGTCGGACTCATGCTGCTGGTGATATGCGCCATCAGCGTCGCCTCTATCTCCGGTAT GCGAGAAACGTGGGCCGGATCGGCACGCTGA
Upstream 100 bases:
>100_bases TGCTTCACGGCAGCGGACGCGGGCAGACTAAGCTGCGACGCCAAGGACTGCCGGTTTTCTCAACGGCGCGACAATCATCA GCACCGGAGGTAGTCCCACG
Downstream 100 bases:
>100_bases ACCGCTCAGCCTGCGATACGCAATTGCCCGTCACCGATTCACGATGACGGGCAACCGGACCGCACTGATTAGGCGGTGGT CAACGCGTCCAATGCCTTGG
Product: membrane transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 436; Mature: 435
Protein sequence:
>436_residues MTSSPAEPRQMADGQVSPRRVFMASAVGSAIEFYDFYIYGTAAALVFPAVFFPNLSHSLALFASIATFSTAFLARPIGAA LFGHYGDRFSRKGTLVVTLITMGLATMAVGLVPGAATIGAAAPTAIVILRLVQGLAVGGEWSGAALLSAEYSPSQNRGRA ATAVPIGTSTGLLLSSLVFLIVSLTIGEDSPAFLSWGWRVPFIASGLLVAVGLYIRLQIAETPQFVEAKAHHQLVKSPLR HVITESPRTLVLTSGTMLIIFTLSFMTNTYFPGFARSELHFSRAAILAAGALGAVVLMVSATAGGILSDRLGRRTVILSS MTLTLPWTLLVTPLLTSGPFWAYLAAMALTYVLFGLAFGPMASFLPESYPVGTRYSGTGVAFNVAGVFGGAIPPLIAGPL QNTLGSWAVGLMLLVICAISVASISGMRETWAGSAR
Sequences:
>Translated_436_residues MTSSPAEPRQMADGQVSPRRVFMASAVGSAIEFYDFYIYGTAAALVFPAVFFPNLSHSLALFASIATFSTAFLARPIGAA LFGHYGDRFSRKGTLVVTLITMGLATMAVGLVPGAATIGAAAPTAIVILRLVQGLAVGGEWSGAALLSAEYSPSQNRGRA ATAVPIGTSTGLLLSSLVFLIVSLTIGEDSPAFLSWGWRVPFIASGLLVAVGLYIRLQIAETPQFVEAKAHHQLVKSPLR HVITESPRTLVLTSGTMLIIFTLSFMTNTYFPGFARSELHFSRAAILAAGALGAVVLMVSATAGGILSDRLGRRTVILSS MTLTLPWTLLVTPLLTSGPFWAYLAAMALTYVLFGLAFGPMASFLPESYPVGTRYSGTGVAFNVAGVFGGAIPPLIAGPL QNTLGSWAVGLMLLVICAISVASISGMRETWAGSAR >Mature_435_residues TSSPAEPRQMADGQVSPRRVFMASAVGSAIEFYDFYIYGTAAALVFPAVFFPNLSHSLALFASIATFSTAFLARPIGAAL FGHYGDRFSRKGTLVVTLITMGLATMAVGLVPGAATIGAAAPTAIVILRLVQGLAVGGEWSGAALLSAEYSPSQNRGRAA TAVPIGTSTGLLLSSLVFLIVSLTIGEDSPAFLSWGWRVPFIASGLLVAVGLYIRLQIAETPQFVEAKAHHQLVKSPLRH VITESPRTLVLTSGTMLIIFTLSFMTNTYFPGFARSELHFSRAAILAAGALGAVVLMVSATAGGILSDRLGRRTVILSSM TLTLPWTLLVTPLLTSGPFWAYLAAMALTYVLFGLAFGPMASFLPESYPVGTRYSGTGVAFNVAGVFGGAIPPLIAGPLQ NTLGSWAVGLMLLVICAISVASISGMRETWAGSAR
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Escherichia coli, GI1789941, Length=434, Percent_Identity=39.1705069124424, Blast_Score=251, Evalue=9e-68, Organism=Escherichia coli, GI1788292, Length=422, Percent_Identity=34.8341232227488, Blast_Score=221, Evalue=7e-59, Organism=Escherichia coli, GI1790550, Length=437, Percent_Identity=32.2654462242563, Blast_Score=214, Evalue=1e-56, Organism=Escherichia coli, GI1788942, Length=401, Percent_Identity=30.1745635910224, Blast_Score=124, Evalue=1e-29, Organism=Escherichia coli, GI87082231, Length=449, Percent_Identity=23.6080178173719, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI87082404, Length=414, Percent_Identity=21.4975845410628, Blast_Score=62, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004736 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR005828 - InterPro: IPR005829 [H]
Pfam domain/function: PF07690 MFS_1; PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 45604; Mature: 45473
Theoretical pI: Translated: 10.10; Mature: 10.10
Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1 ; PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSSPAEPRQMADGQVSPRRVFMASAVGSAIEFYDFYIYGTAAALVFPAVFFPNLSHSLA CCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH LFASIATFSTAFLARPIGAALFGHYGDRFSRKGTLVVTLITMGLATMAVGLVPGAATIGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCHHHHCC AAPTAIVILRLVQGLAVGGEWSGAALLSAEYSPSQNRGRAATAVPIGTSTGLLLSSLVFL CHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCHHHHHHHHHHH IVSLTIGEDSPAFLSWGWRVPFIASGLLVAVGLYIRLQIAETPQFVEAKAHHQLVKSPLR HHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHH HVITESPRTLVLTSGTMLIIFTLSFMTNTYFPGFARSELHFSRAAILAAGALGAVVLMVS HHHCCCCCEEEEECCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH ATAGGILSDRLGRRTVILSSMTLTLPWTLLVTPLLTSGPFWAYLAAMALTYVLFGLAFGP HCCCCHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH MASFLPESYPVGTRYSGTGVAFNVAGVFGGAIPPLIAGPLQNTLGSWAVGLMLLVICAIS HHHHCCCCCCCCCCCCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VASISGMRETWAGSAR HHHHCCHHHHCCCCCC >Mature Secondary Structure TSSPAEPRQMADGQVSPRRVFMASAVGSAIEFYDFYIYGTAAALVFPAVFFPNLSHSLA CCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH LFASIATFSTAFLARPIGAALFGHYGDRFSRKGTLVVTLITMGLATMAVGLVPGAATIGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCHHHHCC AAPTAIVILRLVQGLAVGGEWSGAALLSAEYSPSQNRGRAATAVPIGTSTGLLLSSLVFL CHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCHHHHHHHHHHH IVSLTIGEDSPAFLSWGWRVPFIASGLLVAVGLYIRLQIAETPQFVEAKAHHQLVKSPLR HHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHH HVITESPRTLVLTSGTMLIIFTLSFMTNTYFPGFARSELHFSRAAILAAGALGAVVLMVS HHHCCCCCEEEEECCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH ATAGGILSDRLGRRTVILSSMTLTLPWTLLVTPLLTSGPFWAYLAAMALTYVLFGLAFGP HCCCCHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH MASFLPESYPVGTRYSGTGVAFNVAGVFGGAIPPLIAGPLQNTLGSWAVGLMLLVICAIS HHHHCCCCCCCCCCCCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VASISGMRETWAGSAR HHHHCCHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]