Click here to switch to the map view.

The map label for this gene is ycgM [C]

Identifier: 169630380

GI number: 169630380

Start: 3337553

End: 3338338

Strand: Reverse

Name: ycgM [C]

Synonym: MAB_3299c

Alternate gene names: 169630380

Gene position: 3338338-3337553 (Counterclockwise)

Preceding gene: 169630381

Following gene: 169630379

Centisome position: 65.88

GC content: 63.99

Gene sequence:

>786_bases
ATGCGCCTAGGACGTATTGCCAGCCCAGACGGTGTCGCCTTCGTAAGTATCGAAGGAGAAGACGGCAGAGAAGAATCAGC
GATCGCCCGCGAGATCGCCGAGCATCCCTTCGGCACCCCCACTTTTACCGGACGGCAGTGGCCGCTCGCGGATGTCCGGC
TGCTGGCACCCATCCTGGCGAGCAAGGTTGTCGCGATGGGCAAGAACTACGCCGCCCACGCCGCCGAAATGGGTGGCGAC
CCGCCCGAGTCGCCGGTGATCTTCATCAAGCCGAATACCTCCATCATCGGGCCGGGCCTGCCGATCCAGCTGCCGCCCAG
CGCAACCGAGGTGCATCACGAAGGCGAATTGGCCATCGTGATCGGTCGGCCGTGTAAGGACGTGCCCGCCGCGCGTGCCG
CGGAGAACATCCTGGGGTACACGATCGGCAACGACGTGTCCGCCCGCGACCATCAACGCGCCGACGGTCAGTGGACCAGG
GCCAAGGGACACGACACGTTTTGCCCACTGGGGCCGTGGATCGTCACCGACCTCGATCCGGCGGACCTCGAGATTCGTAC
CGAGGTCAACGGGCAGGTCAGGCAGCGCAGCAGAACCTCCTTGCTATTGCATGATGTCGGAGCGATCGTGGAATGGGTCT
CCGCGGTGATGACCCTGCTACCCGGGGATGTCATTCTCACCGGGACTCCCGAGGGCGTCGGGCCCATTGTCGACGGGGAC
ACCGTGAGCGTCACTATCGAAGGTATCGGAACCCTGTCCAATCCCGTTGTGCGGAAGGCGAAGTAA

Upstream 100 bases:

>100_bases
GAGGATTTCCTGGTGGCGTTGGTCACGCGCGCGAACATCCGCGCCGACCAACATGAGGACTCCGGGGAAGCCGCAAAGCC
TGGCAACTAGGCTTATGTAA

Downstream 100 bases:

>100_bases
GAGTGAGTAACACGAAAATCCGGGTACGTTTCTGCCCGTCGCCGACGGGCACGCCGCACGTCGGCCTGATTCGCACCGCA
CTGTTCAACTGGGCGTATGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MRLGRIASPDGVAFVSIEGEDGREESAIAREIAEHPFGTPTFTGRQWPLADVRLLAPILASKVVAMGKNYAAHAAEMGGD
PPESPVIFIKPNTSIIGPGLPIQLPPSATEVHHEGELAIVIGRPCKDVPAARAAENILGYTIGNDVSARDHQRADGQWTR
AKGHDTFCPLGPWIVTDLDPADLEIRTEVNGQVRQRSRTSLLLHDVGAIVEWVSAVMTLLPGDVILTGTPEGVGPIVDGD
TVSVTIEGIGTLSNPVVRKAK

Sequences:

>Translated_261_residues
MRLGRIASPDGVAFVSIEGEDGREESAIAREIAEHPFGTPTFTGRQWPLADVRLLAPILASKVVAMGKNYAAHAAEMGGD
PPESPVIFIKPNTSIIGPGLPIQLPPSATEVHHEGELAIVIGRPCKDVPAARAAENILGYTIGNDVSARDHQRADGQWTR
AKGHDTFCPLGPWIVTDLDPADLEIRTEVNGQVRQRSRTSLLLHDVGAIVEWVSAVMTLLPGDVILTGTPEGVGPIVDGD
TVSVTIEGIGTLSNPVVRKAK
>Mature_261_residues
MRLGRIASPDGVAFVSIEGEDGREESAIAREIAEHPFGTPTFTGRQWPLADVRLLAPILASKVVAMGKNYAAHAAEMGGD
PPESPVIFIKPNTSIIGPGLPIQLPPSATEVHHEGELAIVIGRPCKDVPAARAAENILGYTIGNDVSARDHQRADGQWTR
AKGHDTFCPLGPWIVTDLDPADLEIRTEVNGQVRQRSRTSLLLHDVGAIVEWVSAVMTLLPGDVILTGTPEGVGPIVDGD
TVSVTIEGIGTLSNPVVRKAK

Specific function: Unknown

COG id: COG0179

COG function: function code Q; 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FAH family [H]

Homologues:

Organism=Homo sapiens, GI40786394, Length=223, Percent_Identity=43.4977578475336, Blast_Score=164, Evalue=1e-40,
Organism=Homo sapiens, GI156231349, Length=223, Percent_Identity=43.4977578475336, Blast_Score=163, Evalue=1e-40,
Organism=Homo sapiens, GI13654274, Length=200, Percent_Identity=37, Blast_Score=144, Evalue=9e-35,
Organism=Homo sapiens, GI215422413, Length=198, Percent_Identity=37.3737373737374, Blast_Score=143, Evalue=1e-34,
Organism=Homo sapiens, GI66348062, Length=193, Percent_Identity=37.8238341968912, Blast_Score=142, Evalue=2e-34,
Organism=Escherichia coli, GI1787428, Length=195, Percent_Identity=39.4871794871795, Blast_Score=145, Evalue=3e-36,
Organism=Caenorhabditis elegans, GI17557057, Length=190, Percent_Identity=38.9473684210526, Blast_Score=146, Evalue=1e-35,
Organism=Saccharomyces cerevisiae, GI6324161, Length=226, Percent_Identity=32.3008849557522, Blast_Score=118, Evalue=1e-27,
Organism=Drosophila melanogaster, GI28572127, Length=220, Percent_Identity=36.3636363636364, Blast_Score=137, Evalue=6e-33,
Organism=Drosophila melanogaster, GI28571789, Length=199, Percent_Identity=35.678391959799, Blast_Score=120, Evalue=1e-27,
Organism=Drosophila melanogaster, GI24663695, Length=220, Percent_Identity=33.6363636363636, Blast_Score=112, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002529
- InterPro:   IPR011234 [H]

Pfam domain/function: PF01557 FAA_hydrolase [H]

EC number: NA

Molecular weight: Translated: 27684; Mature: 27684

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLGRIASPDGVAFVSIEGEDGREESAIAREIAEHPFGTPTFTGRQWPLADVRLLAPILA
CCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
SKVVAMGKNYAAHAAEMGGDPPESPVIFIKPNTSIIGPGLPIQLPPSATEVHHEGELAIV
HHHHHHCCCHHHHHHHHCCCCCCCCEEEECCCCCEECCCCCEECCCCHHHEECCCCEEEE
IGRPCKDVPAARAAENILGYTIGNDVSARDHQRADGQWTRAKGHDTFCPLGPWIVTDLDP
ECCCCCCCCHHHHHHHHHEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCC
ADLEIRTEVNGQVRQRSRTSLLLHDVGAIVEWVSAVMTLLPGDVILTGTPEGVGPIVDGD
CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC
TVSVTIEGIGTLSNPVVRKAK
EEEEEEEECCCCCCCHHCCCC
>Mature Secondary Structure
MRLGRIASPDGVAFVSIEGEDGREESAIAREIAEHPFGTPTFTGRQWPLADVRLLAPILA
CCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
SKVVAMGKNYAAHAAEMGGDPPESPVIFIKPNTSIIGPGLPIQLPPSATEVHHEGELAIV
HHHHHHCCCHHHHHHHHCCCCCCCCEEEECCCCCEECCCCCEECCCCHHHEECCCCEEEE
IGRPCKDVPAARAAENILGYTIGNDVSARDHQRADGQWTRAKGHDTFCPLGPWIVTDLDP
ECCCCCCCCHHHHHHHHHEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCC
ADLEIRTEVNGQVRQRSRTSLLLHDVGAIVEWVSAVMTLLPGDVILTGTPEGVGPIVDGD
CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC
TVSVTIEGIGTLSNPVVRKAK
EEEEEEEECCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]