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The map label for this gene is 169630166

Identifier: 169630166

GI number: 169630166

Start: 3128396

End: 3130087

Strand: Reverse

Name: 169630166

Synonym: MAB_3083c

Alternate gene names: NA

Gene position: 3130087-3128396 (Counterclockwise)

Preceding gene: 169630167

Following gene: 169630162

Centisome position: 61.77

GC content: 65.19

Gene sequence:

>1692_bases
GTGGCAGTTACCCCACCCGAGGACCTGCGGGCGCCCGGACCGCTCGCTGATGGTGCATTGCGCGTGACAGCGCTCGGCGG
TATCAGCGAGATCGGGCGCAATATGACGGTTTTCGAGCTCCGTGGACGCCTACTGATCATCGACTGCGGAGTGCTGTTCC
CCGGCCACAACGAACCGGGTGTGGACCTGATCCTGCCCGATATCCGCCACATCGAGGACCGCCTCGAGGACGTCGAGGCG
CTGGTGCTCACCCATGCGCATGAGGACCACATCGGGGCCATTCCGTTCCTGCTGAAGATGCGTCCGGACATCCCGGTCGT
CGGCTCCGCGTTCACCCTCGCGCTGGTCGAGGCCAAGTGCCGGGAGCACCGCATCACGCCGCGGTTTATCAGGGTCACCG
AGGGCGAGCGGTCCACCCACGGGCCGTTTGAATGCGAATACTTCGCGGTCAACCACTCGATACCCGATGCGCTGGCCATC
GCCGTGCACACCGAGGCCGGAACCATCCTGCACACCGGCGATATCAAGCTCGATCCGCTGCCTCCGGACCGGCGTCCGAC
GGACTTGCCCGGGCTGTCCGGTCTGGGGGATAGGGGCGTGGATCTTTTCCTTGTGGACTCCACCAACTCCGAGGTTCCCG
GTGTGGGGCCGTCGGAGAGCGAGATCGCCCCGACTCTCAACCGGCTTATCGAAACCGCGCGCGGACGGGTGATCGTGGCC
TGCTTCGCCAGCAATGTGGCTCGGGTACAACAGATCATCGACGCCTCGGTGGCTCACGGCCGCCGGGTGGCACTCGTGGG
CCGGTCGATGGTGCGCAACATGGGCATTGCCCGTGAGCTCGGCTTCCTGGAGGTTGACGATCGTGACCTCATAAATGTCG
AGGCCGCGAATGAGCTTGCACCGCAACGGGTTGTACTGATAACCACCGGCACCCAGGGCGAACCGATGGCCGCACTGTCG
CGGATGGCGCGTGGTGATCACCGCCAGATCACGCTGACCCCTGACGATTTGGTCATCCTCTCGTCGTCGCTGGTGCCCGG
GAATGAAGAAGCGGTCTACGGCATCATCGACTCCCTGGCCAAGGTAGGCACTCGGGTAGTGACCAACACCCACGCGCGGG
TTCACGTTTCCGGACATGCGTACGCAGGCGAGCTGCTGTACCTCTACAACGCGGTGCGACCGCGCAACGTGATGCCGGTG
CACGGCACCTGGCGGCACCTGCGCGCCAACGCCGGGCTCGCGGCCAAGACCGGTGTGGAGGAAGGCCGCATCGTATTGGC
GGAGAACGGGGTCAGCGTGGACCTGCACAACGAGCGCGCACGCATCTCTGGCCGGGTACCGGTGGGCAAGATGTTCGTGC
ACGGCCTCGTCGACGGCGATGTCTCCGACGCCACGGTTGGCGAGCGTCTGGTCTTGGGCAACGGCGGGTTTGTGGCCGTC
ACTGTGGTGGTGCGTAGCAATGGACGCCCGGTGGGCCGGCCACAGCTGTTCTCTCGCGGATTCTCCGACGACGCGAAGGC
GCTGGATCCGGTGACCGAACTGGTGATCACGGAACTGAATTCACTTGCCGAACAGTCGGTGAACGATACCGGCCGCATTG
CCCAGTCCGTGCGGCGGGTGGTGGGCAAGTGGGTCGGCGAGACCTATCGCCGGCAGCCGATGATCGTGCCGACTGTGCTC
ACCGTCGACTAG

Upstream 100 bases:

>100_bases
GGGCATCGAGGTTGGCGATCCACGCCTGCCCAATGTTCCGCCCAGCCCGGAGCAGATCGAGGGACTGGCCGCCGATATGC
GTGCCGCCGGGGTGCTGTAG

Downstream 100 bases:

>100_bases
ATCTTCTCGGCGAGCACGGTCCGTTCCAGCTCGGTGGTCGAGAGCGTACGTCCGGCCGGTATCAGGTAGCGCCGCTGATA
CTCCGGACCACTGACATCCT

Product: hypothetical protein

Products: NA

Alternate protein names: RNase J [H]

Number of amino acids: Translated: 563; Mature: 562

Protein sequence:

>563_residues
MAVTPPEDLRAPGPLADGALRVTALGGISEIGRNMTVFELRGRLLIIDCGVLFPGHNEPGVDLILPDIRHIEDRLEDVEA
LVLTHAHEDHIGAIPFLLKMRPDIPVVGSAFTLALVEAKCREHRITPRFIRVTEGERSTHGPFECEYFAVNHSIPDALAI
AVHTEAGTILHTGDIKLDPLPPDRRPTDLPGLSGLGDRGVDLFLVDSTNSEVPGVGPSESEIAPTLNRLIETARGRVIVA
CFASNVARVQQIIDASVAHGRRVALVGRSMVRNMGIARELGFLEVDDRDLINVEAANELAPQRVVLITTGTQGEPMAALS
RMARGDHRQITLTPDDLVILSSSLVPGNEEAVYGIIDSLAKVGTRVVTNTHARVHVSGHAYAGELLYLYNAVRPRNVMPV
HGTWRHLRANAGLAAKTGVEEGRIVLAENGVSVDLHNERARISGRVPVGKMFVHGLVDGDVSDATVGERLVLGNGGFVAV
TVVVRSNGRPVGRPQLFSRGFSDDAKALDPVTELVITELNSLAEQSVNDTGRIAQSVRRVVGKWVGETYRRQPMIVPTVL
TVD

Sequences:

>Translated_563_residues
MAVTPPEDLRAPGPLADGALRVTALGGISEIGRNMTVFELRGRLLIIDCGVLFPGHNEPGVDLILPDIRHIEDRLEDVEA
LVLTHAHEDHIGAIPFLLKMRPDIPVVGSAFTLALVEAKCREHRITPRFIRVTEGERSTHGPFECEYFAVNHSIPDALAI
AVHTEAGTILHTGDIKLDPLPPDRRPTDLPGLSGLGDRGVDLFLVDSTNSEVPGVGPSESEIAPTLNRLIETARGRVIVA
CFASNVARVQQIIDASVAHGRRVALVGRSMVRNMGIARELGFLEVDDRDLINVEAANELAPQRVVLITTGTQGEPMAALS
RMARGDHRQITLTPDDLVILSSSLVPGNEEAVYGIIDSLAKVGTRVVTNTHARVHVSGHAYAGELLYLYNAVRPRNVMPV
HGTWRHLRANAGLAAKTGVEEGRIVLAENGVSVDLHNERARISGRVPVGKMFVHGLVDGDVSDATVGERLVLGNGGFVAV
TVVVRSNGRPVGRPQLFSRGFSDDAKALDPVTELVITELNSLAEQSVNDTGRIAQSVRRVVGKWVGETYRRQPMIVPTVL
TVD
>Mature_562_residues
AVTPPEDLRAPGPLADGALRVTALGGISEIGRNMTVFELRGRLLIIDCGVLFPGHNEPGVDLILPDIRHIEDRLEDVEAL
VLTHAHEDHIGAIPFLLKMRPDIPVVGSAFTLALVEAKCREHRITPRFIRVTEGERSTHGPFECEYFAVNHSIPDALAIA
VHTEAGTILHTGDIKLDPLPPDRRPTDLPGLSGLGDRGVDLFLVDSTNSEVPGVGPSESEIAPTLNRLIETARGRVIVAC
FASNVARVQQIIDASVAHGRRVALVGRSMVRNMGIARELGFLEVDDRDLINVEAANELAPQRVVLITTGTQGEPMAALSR
MARGDHRQITLTPDDLVILSSSLVPGNEEAVYGIIDSLAKVGTRVVTNTHARVHVSGHAYAGELLYLYNAVRPRNVMPVH
GTWRHLRANAGLAAKTGVEEGRIVLAENGVSVDLHNERARISGRVPVGKMFVHGLVDGDVSDATVGERLVLGNGGFVAVT
VVVRSNGRPVGRPQLFSRGFSDDAKALDPVTELVITELNSLAEQSVNDTGRIAQSVRRVVGKWVGETYRRQPMIVPTVLT
VD

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 60704; Mature: 60573

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVTPPEDLRAPGPLADGALRVTALGGISEIGRNMTVFELRGRLLIIDCGVLFPGHNEPG
CCCCCCHHCCCCCCCCCCCEEEEEECCHHHHCCCEEEEEECCCEEEEEECEEECCCCCCC
VDLILPDIRHIEDRLEDVEALVLTHAHEDHIGAIPFLLKMRPDIPVVGSAFTLALVEAKC
CEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHH
REHRITPRFIRVTEGERSTHGPFECEYFAVNHSIPDALAIAVHTEAGTILHTGDIKLDPL
HHCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCEEECCC
PPDRRPTDLPGLSGLGDRGVDLFLVDSTNSEVPGVGPSESEIAPTLNRLIETARGRVIVA
CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
CFASNVARVQQIIDASVAHGRRVALVGRSMVRNMGIARELGFLEVDDRDLINVEAANELA
EEHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCHHHCCEEEECCCCEEEEECCCCCC
PQRVVLITTGTQGEPMAALSRMARGDHRQITLTPDDLVILSSSLVPGNEEAVYGIIDSLA
CCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCCCEEEEECCCCCCCCHHHHHHHHHHH
KVGTRVVTNTHARVHVSGHAYAGELLYLYNAVRPRNVMPVHGTWRHLRANAGLAAKTGVE
HHCCEEEECCCEEEEECCCCCHHHEEEEEECCCCCCEEECCCCHHHHCCCCCCEECCCCC
EGRIVLAENGVSVDLHNERARISGRVPVGKMFVHGLVDGDVSDATVGERLVLGNGGFVAV
CCEEEEEECCEEEEECCCCEEEECCCCHHHHHEEEECCCCCCCCCCCCEEEEECCCEEEE
TVVVRSNGRPVGRPQLFSRGFSDDAKALDPVTELVITELNSLAEQSVNDTGRIAQSVRRV
EEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
VGKWVGETYRRQPMIVPTVLTVD
HHHHHHHHHHCCCEEEEEEEEEC
>Mature Secondary Structure 
AVTPPEDLRAPGPLADGALRVTALGGISEIGRNMTVFELRGRLLIIDCGVLFPGHNEPG
CCCCCHHCCCCCCCCCCCEEEEEECCHHHHCCCEEEEEECCCEEEEEECEEECCCCCCC
VDLILPDIRHIEDRLEDVEALVLTHAHEDHIGAIPFLLKMRPDIPVVGSAFTLALVEAKC
CEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHH
REHRITPRFIRVTEGERSTHGPFECEYFAVNHSIPDALAIAVHTEAGTILHTGDIKLDPL
HHCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCEEECCC
PPDRRPTDLPGLSGLGDRGVDLFLVDSTNSEVPGVGPSESEIAPTLNRLIETARGRVIVA
CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
CFASNVARVQQIIDASVAHGRRVALVGRSMVRNMGIARELGFLEVDDRDLINVEAANELA
EEHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCHHHCCEEEECCCCEEEEECCCCCC
PQRVVLITTGTQGEPMAALSRMARGDHRQITLTPDDLVILSSSLVPGNEEAVYGIIDSLA
CCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCCCEEEEECCCCCCCCHHHHHHHHHHH
KVGTRVVTNTHARVHVSGHAYAGELLYLYNAVRPRNVMPVHGTWRHLRANAGLAAKTGVE
HHCCEEEECCCEEEEECCCCCHHHEEEEEECCCCCCEEECCCCHHHHCCCCCCEECCCCC
EGRIVLAENGVSVDLHNERARISGRVPVGKMFVHGLVDGDVSDATVGERLVLGNGGFVAV
CCEEEEEECCEEEEECCCCEEEECCCCHHHHHEEEECCCCCCCCCCCCEEEEECCCEEEE
TVVVRSNGRPVGRPQLFSRGFSDDAKALDPVTELVITELNSLAEQSVNDTGRIAQSVRRV
EEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
VGKWVGETYRRQPMIVPTVLTVD
HHHHHHHHHHCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]